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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027835 ID=TCONS_00027835|Name=TCONS_00027835|organism=Clytia hemisphaerica|type=transcript|length=636bp TTAGAAActaaatatatcaaaataatGGATTCATGGCTTCATTGCAACAC ATGCTTTCATCTCCCTAATGGAGAAAGCGTGCAATTCCACTTGACAAGTT GTGGCCACATCTTCTGTAATACTTGCCTCAACAAAAATTTGGATAAAGAA TGCAAAACATGCGGTCAAACTTATGCAGGTGCCATTCCTCTTTCAAGTAA ATTGAAACCAGATGTTCAATTATATTTCATGGACATGAAGGATGTCTGCA AAAATATTACGAAGCAGGTCCAGCAAGCTCAACTCGTATCCGAATTTCAA AAGGGACACTCCCAGCGTTTGCACTCGCACCAGAAACAAAAGCAAATCAT ATCCGATGACCCCTAAGACTCCAGTTACACCTGGTGTAGCCAAGGCTCCT GTAACACCTGGTTTTACTCCTGGCTTGAAAAGAAcgCACTCTAATCAATC AATGGTGTCAGTCAACTCTCAAAGGCCATCGCCTTTAAATAACCGTGTGA CATCTGGTAAACCATTAGCTCGACCTGGTAGTAGTCCCATGCAACAGAGC CCCTCACATCGACACATGCAACCTAGTCCTGTGGGTAGTATGATGTCAAG AAGTCGAACACCTGGCAACAACGCCACTAATGGAAC Run BLAST on NCBI transcript from alignment at sc0000647:61952..70445- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027835 ID=TCONS_00027835|Name=TCONS_00027835|organism=Clytia hemisphaerica|type=transcript|length=8494bp|location=Sequence derived from alignment at sc0000647:61952..70445- (Clytia hemisphaerica) TTAGAAACTAAATATATCAAAATAATGGATTCATGGCTTCATTGCAACAC
ATGCTTTCATCTCCCTAATGGAGAAAGCGTGCAATTCCACTTGACAAGTT
GTGGCCACATCTTCTGTAATACTTGCCTCAACAAAAGTAAGTTCTTTTCT
TTTATTGTAATTATATGTAGAGATCAGAGCCTTTTGCTTACTGTACGTGT
CCCGAAAAAAAGTATCGAGTCGTACCACTTCTATAAAAAAAAAGTTCTTG
TGTGTGTTTCACAAATTTGCAAAGTTTATCAAAGTTTCTCTCTGTGTCAT
ATTATTTTCATGAGACATCTTTTATGAATAACTTTTACAAAAAAAACAAT
TCTCAATAACTTTAACGTCATGAAAATTGTAAAGAAAGTTAATTATTTTT
AATCATAATGACTTTTGTAAAAACAATTATAGTGTTGGTATATATATTCT
TACATTTAATTAAACACACGCAACAACCTTCTACTCAGAATCATGTTCGA
ACTCGATACTCTTTTGCCGGACACCCTGCATGAATAACATCACTGTATGA
ATAATATCACTGATTTTCAAGAGTGTGGCACATTCATCTAATTATTTGTT
CTACTTTTTAGATTTGGATAAAGAATGCAAAACATGCGGTCAAACTTATG
CAGGTGCCATTCCTCTTTCAAGTAAAGTGAGTATTCATAATTCTGCATAA
TTATTATCGACCGCCTGAAGGCGGTTTTTTGCGAAGCGAATTTATGAGCG
AAGCAGTTTTGCTATATTGTGTGCACGTACCAGTACCTTTAACTTCTATC
CCATATTCCCAAGCGAAAATTTGCTATAAAATTTGCTATATAAATCACAT
CTTCAAACCGATGATTTTATCAAAATGACCTTGAATGGTTTGGCTTGAAG
CCACGAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNGGTAGCTAGGACTGCGAAAAATGCCGTTTTAAAATG
GTGTACCCTAGCAGTGAACAGCAACAAAATTACCGGAAGCCGAAACACGG
ACTTAGAATTTGAAGTGGATCAAATTACCGCGCGGGCGGCACGCATCTAA
GCAATCTAAGCAGTGGTTCTTCGGTTTTAAATGTTTATTTTGCTGATAAA
TGGAAAAAAATTAGTTTGAACAGTAACAGAAAGGATCTTCATCATCCCTT
GACTTTTAACACCAAGACCAAGTATCAAGTATCAAATAAGGTCAATCAAT
GAGAGGTTTTTGCAAGTCGCGCGGGCGGGCGGGAGGAGTGCTCTTTTAGT
GAACGACCTGTTGTTTTAGTGAACAACCTACCTTGCAAAACTAAGTGGAT
ATTCTATAATAAAGAAGTACGGAGGTAATCAAATTTGTCGAATTTGTCAA
GAAATAAATCAAAACTGCCCAAGAACCAACAAGCCATCTTTGTACATTTT
TGTTTTTGTTTTATTTTTATGTTTTGATGATTTCGACAGACGATTCGTGA
TTCGAATAAAAATGTTTAATCGTTCGACGAATATCGTTCGATTTTATTAA
GGCCCTATTTACACTAGAACAACTAGAAGTAAAAAAAAAGCCTTGCGCGG
GCGGCGGCGGGTGTTGTGTTTATCTGGTACTCGATGTAGAAATTTTCTTC
CGACACGCTAAAGCTCTGAAGGTCGGGAAAATTTTAACATCTGGAACCTT
TGGGTTACCATNTTTTCTGTAAGGTTTCTCAGGCAGCAGAGATTTTCATG
CTAAATTCAGTCGGGTGCAACCGATAGTCAAGCAAAAAGTGTAAGGACAG
CTANNAACATTTCTCTGACAATGAGAAACCATGTATTCCTTAGAGAAGAC
GCGACTATTTATATTTCGTCAGAAATCGAGGTTTTTATCGATTTTCGGCT
AAATAGCCTATGTAAAATAGTCTAAATAGCCTATGATAGACTAATCAGCC
TATGATAGGCTAATTTGAAGGTGTCCTTGACTGTCAGATAAGTGTTGTGC
CGCCGTGGATTATGTGGTGTGTTTGGGGCATCAAGGCTCTTACGCCGACC
CTGTCTCTATAGCGGCTTTATTAGAGGGATTTTTAGAGTGTCTCTTATTT
TGCTAGCAACTTGCGAATTGAGGTGGAGTCTGGATCGCTTCGCAACCCTT
ATACAATACGGCTAGTTACCGTCGTGTTTTTGTTTACGGAGTCTGGGAGG
TTGAAAGTTGAAATCGAAAGTGAAATCGTGCAGCTTTAGTTACCATCTTT
AATTTTTATTTTTGGTGGCTGAATATTAGGGAGATAACCACGCAAATATC
TAAGAGATATCCCGCGTGTACGGTGGCCCAGAGAGGTATGGGTGGATGGT
ACGGTGGCTTAGAAAGTTCAGCGTGTTAGCTAGGATGCAAGCGTTTTGAT
TTCAGAGGTACTCTTTGTTTTTAGATGTACTTCTTGGAGTAATTTTGAAT
TATAACTTCTCTCGGTCCTCTGCAATTCTTTTTGACATTGTTAGTTATAT
TGCATTTTACATGTGCTTTTTTTCATTTTTAATGAAGTATCATACATGAT
TTGTGATGGATGTTGTTGTTGAAGAAAGTGTTAATTGCTCTGTAAAACAG
CGGTCGCACCAGTTTGCTCTGAAGCAAACTGTGACCTAGTATTTTCGTGC
GCCGAAGGCGGTTAATCTTCCGAGCTGTATACGGGTAAAAAAGTTTGATT
CAAAATTTGTCACAACTGTGCTATCCTTTTGAATATTTTAAAATTTGACT
CGCTTNATCATTGCCTAAACCGATGAATTCTTCATCAAATTTAAGGCGGT
CGTTATCCAGTGATGTGAGCACTGTTCTAGTATTATTGTAATGTTTTGTT
CGCTCAATGAGTTTTTTGGGGTGCGAAGAACGGGGGTTGTATGAAAATGC
ATTTTTCCAAACCTCTATGATGTACATCACTCTAAGGGACTTTCCTCCCC
TGTTAGGCGAAATGAATCACGCTTAAATCCGAACACTCTCATTCTCGCAT
GAATTATTTTTGTCAGCGATTTTTAAGCATCCGGCAATTCTTTTTGCCGC
CTTTTTGAGAGACTTTTGAAATTGAACACTTGTTCTCTGTGTCCCTTCAT
TTTGAAAGTCACCCTCCAATGCCTACGCCCGATGACTAGCCACCATGGTT
AATGTGCTCCAAGCATTAAAATAGTTAATTACAAGATACTTTTGACTGTG
GTAGATTTTAGCAATGCAAGATCTTCTTTCCTTGCAAATAGGTTCTGAAA
AAATGGCAGTTTCAATTCGATTTACTTTCAAAGTAACTGCTATTCTTTAC
CTTTTTTAAGACAGAGAGCGAGTTAATGAAAGTAGCAAGAAATTCCTTTA
GTTTATTTTCTTAAAAACCATAAAAATTGTCTAATGTAATTTTCCAAGAG
ACAAGAGACTGTAGATAATTGTCCTTTGAAAATACAACAAATTTAATTTT
AGTTAATTTCCCTCAAATATTTTTTCGACATTATTTTCCTTGGGAAATAC
AGAAAAATGTTTTAATTAGTGTTCCATTCAATATAAAAGAAACAAAATTT
GTTTGTTTCCTTATAAAATACAAGTAGTAACCGTTTACCTATTTCTCATA
AAGTAAAAAATACTAAATTTCTCAAAAATAGCAGCGGGCGAAGCGAGCTT
AATCACTATTGGTAAAGAGTAGTCTCGGACGACGCCGTGACGGCTAGTTC
AATATTATTGTTCTTTGAGAAGAACTTCAGAAAAATATTGGTCAGTCGGT
CGGTATAATAAAAAATGGAAAGATCAAGATCTAATAATCTTTTTACGTTT
TGAAGCAGTAGACCACTCCTCTTTATCAATGAGCGACTTTCGTGCCATCT
CCATTGGGAGATTTTAAATTCGTCTAAGTTCTGTGATGTTCAACTTGTTC
AGTTGAAATATCTGCAAAAAAATAGCCCATCTTCCAGCTTCAATATTGTT
ATTTTTTTCGAAAGAACAGGGTCGTTTGAGCAATAAATTAATTTAGTATC
GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNGAGATAACGATGTTAATCATGAATAGATGAAAAACATGCTGTGGC
GCCCCGCTAGGGAGATAAATGTTAAGTAAATAAAAAAACTTGAAGTATTT
ATCAGCTTCTGATTAAAACCACTAGTGATTAAACAACTCAAAATATAAAT
ACTAGCTCATCAAAATCACTGATTTCGTCAAGAAACATATCAAAACTGCC
ACAGTGGTTTAGCTTATACATGTTATTTTCTATAAGTATACAAAAATCCG
AAAACAGGCTCAGAGATGCTTAGGTTCAAAGCATAATAAGGCTGAAAAAT
GCTTGAGGGGATGCTGAAATCTAAAATACAAATTTAGGGAAATACTGAAA
ATCTGCAAAATTCCAGTCAAAATCAGGGAAAAAAAATTTTTCGTAGGCTC
AAGTAATGTTTGCCATATGCTTAATTTTTCCCCATATCTGAGCCTAGATA
TGCTTATAAGTGCAATGCTTATAAAAAATGTCCATATTTTCAAGTTAAAT
CACGCAAACGAGAGTGTCAAAGTGGATCATTGCCTAAACCGATGAATTCT
TCATCAAATTTAAGGCGGTCGTTATCCAGTGATGTGAGCACTGTTCTAGT
ATTATTGTAATGTTTTGTTCGCTCAATGAGTTTTTTGGGGTGCGAAGAAC
GGGGGTTGTATGAAAATGCATTTTTCCAAACCTCTATGATGTACATCACT
CTAAGGGACTTTCCTCCCCTGTTAGGCGAAATGAATCACGCTTAAATCCG
AACACTCTCATTCTCGCATGAATTATTTTTGTCAGCGATTTTTAAGCATC
CGGCAATTCTTTTTGCCGCCTTTTTGAGAGACTTTTGAAATTGAACACTT
GTTCTCTGTGTCCCTTCATTTTGAAAGTCACCCTCCAATGCCTACGCCCG
ATGACTAGCCACCATGGTTAATGTGCTCCAAGCATTAAAATAGTTAATTA
CAAGATACTTTTGACTGTGGTAGATTTTAGCAATGCAAGATCTTCTTTCC
TTGCAAATAGGTTCTGAAAAAATGGCAGTTTCAATTCGATTTACTTTCAA
AGTAACTGCTATTCTTTACCTTTTTTAAGACAGAGAGCGAGTTAATGAAA
GTAGCAAGAAATTCCTTTAGTTTATTTTCTTAAAAACCATAAAAATTGTC
TAATGTAATTTTCCAAGAGACAAGAGACTGTAGATAATTGTCCTTTGAAA
ATACAACAAATTTAATTTTAGTTAATTTCCCTCAAATATTTTTTCGACAT
TATTTTCCTTGGGAAATACAGAAAAATGTTTTAATTAGTGTTCCATTCAA
TATAAAAGAAACAAAATTTGTTTGTTTCCTTATAAAATACAAGTAGTAAC
CGTTTACCTATTTCTCATAAAGTAAAAAATACTAAATTTCTCAAAAATAG
CAGCGGGCGAAGCGAGCTTAATCACTATTGGTAAAGAGTCGTCTCCGACG
ACGCCGTGACGGCTAGTTCAATATATTGTTCTTTGAGAGGAACTTCAGAA
AAATATTGGTCAGTCGGTCGGTATAATAAAAAATGGAAAGATCAAGATCT
AATAATCTTTTTACGTTTTGAAGCAGTAGACCACTCCTCTTTATCAATGA
GCGACTTTCGTGCTATCTCCATTGGGAGATTTTAAATTCGTCTAAGTTCT
GTGATGAAATTACACTTTTTCAACTTGTTCAGTTGAAATATCTGCAAAAA
AATTGCCCATCTTCCAGCTTCAATATTGTTATTTTTTTCGAAAGAACAGG
GTCGTTTGAGCAATAAATTAATTTAGTATCGATTTATGTGGATATAATGC
AGCTTCCGNGTCGTTTGAGCAATAAATTAATTTAGTATCGCTTTATGTGG
ATATAATGCGGCTTCATAATCAATTGATTCTCTCTTTTAGTTGAAACCAG
ATGTTCAATTATATTTCATGGACATGAAGGATGTCTGCAAAAATATTACG
AAGCAGGTCCAGCAAGCTCAACTCGTAAGCTAACATATTATTTCGTCTCT
CAAATGGAAAAATTTTATTGAATATTGAAATTTGAATATTGTTTTTGAAC
CTTTTCCTCTAAAAAGACTCTAATTTTTATAAATCCAATCATTACTTCTT
TGTGTTTCTTTAAGGTATCCGAATTTCAAAAGGGACACTCCCAGCGTTTG
CACTCGCACCAGAAACAAAAGGTAAAGACAAAGAAAGTTCTTTAATCTAA
TCTCAAGTTGTATTTTATTTCCATATAACGAGAAATATTTTCAGAAGTGT
TAGGAGTATACAGGTTGTATTTCATTTTTGTGTTATTTTAGCTTCGTAAA
TTGACTGAAATGATGCACCAGGCTAGAGAATTAGAAAGGTTTGTAAAGAA
GGGGTTTGATTATTAAAGCAAGTTATTAAAATTAAGCTATTTTAGTCATT
GCTTGTTTGCTCAGATGTTTTTGTTTAGAATTCAGCTTTATTCAATTAGT
TTATACTTACCTTAGGGAACTAATTTTAGCGGGAAACTAATTTTCGTGTT
CGAAAAAAATTCAAAAAAATCACATTTCGCGGGAATCAATTTTCGCGGTT
TTGCCCTATTTTGAACACATTTCTTTCATTTTCCTTGGAATTTTTAATTT
TTTTTGGTGCAAAATAGCCAAATTTATGATATGTGTGTTCTAATTTTTGC
ACTTTTGCCGAAAAACGGCGAAAATTAGTTCCCTAAAGGTACTCTAAAAT
CAAAGTGTTTTTGTAACATTCCTTGTCTACTTTATAGCACAATGAATGTA
TTAAGGTCTGGTTGACCAGCAAGTAATAATGTCTTTTTTTTGTAGACAAT
ACCGAGAGGTCCTTTGGGAGAATGACAAACTAAAAAACTTTGTTCTTTCG
ATGGGTTACCAAGTCCAAGACGTCTTGGGTAGAGCAAGGTATGTTGTTAT
GAGTTGTTGTAATTTTTATTGTGAATTTTGATAGATGAATGGAAAGATTA
TCTTCTTCTAGGAACTCGATTGTGATTACTTCTTAAAAATATGTATTGGA
ATTTCTAGTAAAGTTTGTGATTAATGTTGCAGTGCTCAATGAAGACCAGA
TCTGTATGAAAAGTATAGTGGAGTCTCCATAACTCGAACACGCACGGGGA
CACAAATCTCTAGTTCGAGTTAAGGAAATTTCGAGTTTGGAGTAAGGTTT
ATTTAACCAGTAACTGGCAGGAGCATAAAACTTGTTCGAGTTAAGGAGAC
ATTCGCGTCATAGATGTTCGAGTTAAAGAGACTCCACTCCAATGTTTTGA
AATTCATCTAATCATAGTCCATACAAAAACTCTGGTCTGGAAGCTTTATT
TTTTTAACTTTTTTAGCCTTTTCCTTTTTTTAATATCAAAAGATAAAAAT
CGATTTGCTCCGTTTTTGATCAAAAAGCGAGCAAAACGAACTAATTTCTC
AAACGCAAGTTCAAGCTTGGTTCAAGTAAGAAACAATAGAAAGAAACAAA
AGGATTCCAGACCGGGTTTTTTTTATACGGACTATATGTTCTAAAATCCA
GTACAATAAAAGTTTTATCAGAAACAATAATATTGGTTTTTTCTTCATTT
TATTTCTTTTTGCAGCAAATCATATCCGATGACCCCTAAGACTCCAGTTA
CACCTGGTGTAGCCAAGGCTCCTGTAACACCTGGTTTTACTCCTGGCTTG
AAAAGAAGTATGTAGCATTTTCGGATCTTTTAGCGAGACTCATTTCTGAA
ACACTTCAGATTTCAGCTAAAGCTAGAATATTATCCGAGCAGAGAATAGC
GATACAATTTGGTAAATGAATATTTTATCTTCGTATCTATAAGACCAGGT
TACCTCCAATTAGTTTCGTCTTCAATGCATATCATGTTTTTATTTTCAAG
CGCACTCTAATCAATCAATGGTGTCAGTCAACTCTCAAAGGCCATCGCCT
TTAAATAACCGGTAAAAGTGTTGTTGTAAAACTTTGCTTTTTGATTTGTT
ATTTTATCTGAAATTTTCTCTAATTTGATGAGTTACGGCGGCAACAATCC
ATTTCCCCTGTTTCTGCAGTAATGTAAAGTAACGGACTATTAGAGATACA
ATGTTTGGGTCTCAAATGACGTAATCACTTCGGCGATACTTCAATGCAAG
TTTTTTTCGTGAAAATTATTATATTATTATTTACAATGTATACTCATTTA
CAGTGTGACATCTGGTAAACCATTAGCTCGACCTGGTAGTAGTCCCATGC
AACAGAGCCCCTCACATCGACACATGCAACCTAGTCCTGTGGGTAGTATG
ATGTCAAGAAGTCGAACACCTGGCAACAACGCCACTAATGGAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
| TCONS_00027835-exon-sc0000647-1575043694:70310..70445 | TCONS_00027835-exon-sc0000647-1575043694:70310..70445 | Clytia hemisphaerica | exon |
| TCONS_00027835-exon-sc0000647-1575043694:69770..69834 | TCONS_00027835-exon-sc0000647-1575043694:69770..69834 | Clytia hemisphaerica | exon |
| TCONS_00027835-exon-sc0000647-1575043694:64272..64355 | TCONS_00027835-exon-sc0000647-1575043694:64272..64355 | Clytia hemisphaerica | exon |
| TCONS_00027835-exon-sc0000647-1575043694:64075..64131 | TCONS_00027835-exon-sc0000647-1575043694:64075..64131 | Clytia hemisphaerica | exon |
| TCONS_00027835-exon-sc0000647-1575043694:62589..62680 | TCONS_00027835-exon-sc0000647-1575043694:62589..62680 | Clytia hemisphaerica | exon |
| TCONS_00027835-exon-sc0000647-1575043694:62335..62395 | TCONS_00027835-exon-sc0000647-1575043694:62335..62395 | Clytia hemisphaerica | exon |
| TCONS_00027835-exon-sc0000647-1575043694:61952..62092 | TCONS_00027835-exon-sc0000647-1575043694:61952..62092 | Clytia hemisphaerica | exon |
| TCONS_00027835-exon-sc0000647-1510915933:70310..70445 | TCONS_00027835-exon-sc0000647-1510915933:70310..70445 | Clytia hemisphaerica | exon |
| TCONS_00027835-exon-sc0000647-1510915933:69770..69834 | TCONS_00027835-exon-sc0000647-1510915933:69770..69834 | Clytia hemisphaerica | exon |
| TCONS_00027835-exon-sc0000647-1510915933:64272..64355 | TCONS_00027835-exon-sc0000647-1510915933:64272..64355 | Clytia hemisphaerica | exon |
| TCONS_00027835-exon-sc0000647-1510915933:64075..64131 | TCONS_00027835-exon-sc0000647-1510915933:64075..64131 | Clytia hemisphaerica | exon |
| TCONS_00027835-exon-sc0000647-1510915933:62589..62680 | TCONS_00027835-exon-sc0000647-1510915933:62589..62680 | Clytia hemisphaerica | exon |
| TCONS_00027835-exon-sc0000647-1510915933:62335..62395 | TCONS_00027835-exon-sc0000647-1510915933:62335..62395 | Clytia hemisphaerica | exon |
| TCONS_00027835-exon-sc0000647-1510915933:61952..62092 | TCONS_00027835-exon-sc0000647-1510915933:61952..62092 | Clytia hemisphaerica | exon |
| TCONS_00027835-exon-sc0000647-1491911889:70310..70445 | TCONS_00027835-exon-sc0000647-1491911889:70310..70445 | Clytia hemisphaerica | exon |
| TCONS_00027835-exon-sc0000647-1491911889:69770..69834 | TCONS_00027835-exon-sc0000647-1491911889:69770..69834 | Clytia hemisphaerica | exon |
| TCONS_00027835-exon-sc0000647-1491911889:64272..64355 | TCONS_00027835-exon-sc0000647-1491911889:64272..64355 | Clytia hemisphaerica | exon |
| TCONS_00027835-exon-sc0000647-1491911889:64075..64131 | TCONS_00027835-exon-sc0000647-1491911889:64075..64131 | Clytia hemisphaerica | exon |
| TCONS_00027835-exon-sc0000647-1491911889:62589..62680 | TCONS_00027835-exon-sc0000647-1491911889:62589..62680 | Clytia hemisphaerica | exon |
| TCONS_00027835-exon-sc0000647-1491911889:62335..62395 | TCONS_00027835-exon-sc0000647-1491911889:62335..62395 | Clytia hemisphaerica | exon |
| TCONS_00027835-exon-sc0000647-1491911889:61952..62092 | TCONS_00027835-exon-sc0000647-1491911889:61952..62092 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
| sc0000647 | supercontig | sc0000647:61952..70445 - |
Blast
The following BLAST results are available for this feature:
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