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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027830 ID=TCONS_00027830|Name=TCONS_00027830|organism=Clytia hemisphaerica|type=transcript|length=1123bp
GGTAGTGGAATAGTACATCCCTGCACCGGCCGACACACTGCCAAAGATGA
TGATAATGGTTAAGAAGCCGATCAAACCAAAGATGATTTTCACCAATGTG
AtggaaatataagaaatatccATGACCTTTCCATAGTGTTTCTCCTTCTT
CATGGAACCTTCGATAGCTGGCATGTAAGGTTGCGAGGAGTAGCTCACCA
CCATGATACCCATACTGATAAAGAACTTACCCACATTGAAATCCAATGCT
TCACTATTAATAGACCATTCCTCAGCTTGATAAAAACCATAAATTGCGAC
AGTGACGTAAACGATTTGACCGATAACTACAGTCAGGAAACTAACGAAAG
CCACTTGACCGAGATTCGCCATAAACGCGTTTGGAATGACCAATAGGAAA
GCAAGCATGGACCAATGACTTTTCTCTAACGGTGCGTTTGGGAATGAACT
ATGGAGGATTGATCCACACAGGATGAGAAGGAGCGTGCAATAGGATAGCT
GCTCCACTATCATAGCTAGGTAGACGATCCATTTCCCGAAAGCTCCTCCA
AATGCTTCTCCTATATCTTCATAACTATCTCGTACCCGGACCTCGATCCC
AGTGACGGGATCCGTCTCATACAAACATTTGACTAATCGCTTGCTTGTGT
AATTAGACATTGTGGCGACGATTGCTGTGAAGATTAAACTGAGATATGTT
CCCGATAAAACGACGTACGGCATGGAGAGGATTACAACACCTTGGTTCGC
ATTGAAAATATTCCAGAATGTTTGTAAATTCGATGCCTTCTTCGGTTCAT
TTGAACACGTTTCGCCAGACATAAGATTTTCGTTTGAATCGTAATAACGC
TCCTCGTCTTCATCATATTGCGAGCCATCATCATCCTTTTCCACGAATAA
AACGTCGTAAAAATCTTTCACACTTTCGCGAAACTTCTCGAAAACCGTTG
TGTTGAACCACATTGTATGTAACCTTTGTAAATTCTGGTAtgctttttat
ttcttcattGGTTATACCATTGATTGCTATCTATAAATTAGAAAGACAAT
ATATTGGTTAATTTGTTAATTTCCTatactattcatgatatgcacgaCTG
CAATGACTTTCTATAGatccaat Run BLAST on NCBI transcript from alignment at sc0000647:210024..211680+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027830 ID=TCONS_00027830|Name=TCONS_00027830|organism=Clytia hemisphaerica|type=transcript|length=1657bp|location=Sequence derived from alignment at sc0000647:210024..211680+ (Clytia hemisphaerica)
GGTAGTGGAATAGTACATCCCTGCACCGGCCGACACACTGCCAAAGATGA
TGATAATGGTATGTATCATACGCTCAAACTTGTCCAATTGTCTCAACTTC
ATGTGGAATAAGCAAGGGAAAATGAACGCTAAACACATGCCAGTAAAATT
ACCAACAAAACTCATATATAGACCAAAGTGCGGCACAATTACCGCTATGG
TTAAAGCAATACTGATGAGTAACATTCGAATGATGGCTTTCCTCAAACGT
TTTAAGTATTCGTTTTCTGGTTGTTCGTCGTCCTCCAATTCGATGATTTT
CCCGCCAATTCTGCTATCACCCTCGTCTCCACTCTCCTCACTTTCCAACA
GTGTTTTCTCAAGGATTTCGTCCTCAGTCTTCAAGTCCTTATACTTTGTA
TCACACATCGATTGCACTTTACTGCTGAACCAATCTTTGGAGATGTGAAT
TTTATCAATCAAGACGAACACAGTGTAAGCTGGAAATGTGAAAGAAAACA
AGGCGAGACAGAGGACACAAATATTGACGGTGATCTTGAAAGGACCATGA
GGGAGGTTATTAGTAATGCACTGTTTTGTATCTCCTTTGAAGGTTAAGAA
GCCGATCAAACCAAAGATGATTTTCACCAATGTGAtggaaatataagaaa
tatccATGACCTTTCCATAGTGTTTCTCCTTCTTCATGGAACCTTCGATA
GCTGGCATGTAAGGTTGCGAGGAGTAGCTCACCACCATGATACCCATACT
GATAAAGAACTTACCCACATTGAAATCCAATGCTTCACTATTAATAGACC
ATTCCTCAGCTTGATAAAAACCATAAATTGCGACAGTGACGTAAACGATT
TGACCGATAACTACAGTCAGGAAACTAACGAAAGCCACTTGACCGAGATT
CGCCATAAACGCGTTTGGAATGACCAATAGGAAAGCAAGCATGGACCAAT
GACTTTTCTCTAACGGTGCGTTTGGGAATGAACTATGGAGGATTGATCCA
CACAGGATGAGAAGGAGCGTGCAATAGGATAGCTGCTCCACTATCATAGC
TAGGTAGACGATCCATTTCCCGAAAGCTCCTCCAAATGCTTCTCCTATAT
CTTCATAACTATCTCGTACCCGGACCTCGATCCCAGTGACGGGATCCGTC
TCATACAAACATTTGACTAATCGCTTGCTTGTGTAATTAGACATTGTGGC
GACGATTGCTGTGAAGATTAAACTGAGATATGTTCCCGATAAAACGACGT
ACGGCATGGAGAGGATTACAACACCTTGGTTCGCATTGAAAATATTCCAG
AATGTTTGTAAATTCGATGCCTTCTTCGGTTCATTTGAACACGTTTCGCC
AGACATAAGATTTTCGTTTGAATCGTAATAACGCTCCTCGTCTTCATCAT
ATTGCGAGCCATCATCATCCTTTTCCACGAATAAAACGTCGTAAAAATCT
TTCACACTTTCGCGAAACTTCTCGAAAACCGTTGTGTTGAACCACATTGT
ATGTAACCTTTGTAAATTCTGGTAtgctttttatttcttcattGGTTATA
CCATTGATTGCTATCTATAAATTAGAAAGACAATATATTGGTTAATTTGT
TAATTTCCTatactattcatgatatgcacgaCTGCAATGACTTTCTATAG
atccaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027830-exon-sc0000647-1491911889:210024..210081 | TCONS_00027830-exon-sc0000647-1491911889:210024..210081 | Clytia hemisphaerica | exon |
| TCONS_00027830-exon-sc0000647-1510915933:210024..210081 | TCONS_00027830-exon-sc0000647-1510915933:210024..210081 | Clytia hemisphaerica | exon |
| TCONS_00027830-exon-sc0000647-1575043694:210024..210081 | TCONS_00027830-exon-sc0000647-1575043694:210024..210081 | Clytia hemisphaerica | exon |
| TCONS_00027830-exon-sc0000647-1491911889:210616..211680 | TCONS_00027830-exon-sc0000647-1491911889:210616..211680 | Clytia hemisphaerica | exon |
| TCONS_00027830-exon-sc0000647-1510915933:210616..211680 | TCONS_00027830-exon-sc0000647-1510915933:210616..211680 | Clytia hemisphaerica | exon |
| TCONS_00027830-exon-sc0000647-1575043694:210616..211680 | TCONS_00027830-exon-sc0000647-1575043694:210616..211680 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000647 | supercontig | sc0000647:210024..211680 + |
Blast
BLAST of TCONS_00027830 vs. Swiss-Prot (Human)
Match: VIAAT (Vesicular inhibitory amino acid transporter OS=Homo sapiens GN=SLC32A1 PE=2 SV=2) HSP 1 Score: 150.214 bits (378), Expect = 3.958e-40 Identity = 80/242 (33.06%), Postives = 139/242 (57.44%), Query Frame = -2
Query: 88 NEPKKASNLQTFWNIFNANQGVVILSMPYVVLSGTYLSLIFTAIVATMSNYTSKRLVKCLYETDPVTGIEVRVRDSYEDIGEAFGG----AFGKWIVYLAMIVEQLSYCTLLLILCGSILHSSFPNAPLEKSHWSMLAFLLVIPNAFMANLGQVAFVSFLTVVIGQIVYVTVAIYGFYQAEEWSINSEALDFNVGKFFISMGIMVVSYSSQPYMPAIEGSMKKEKHYGKVMDISYISITLVK 801
++ K + + WN+ NA QG+ +L +PY +L G YL L A + YT K L+ CLYE + G VRVRDSY I A G +V +A I+E + C L +++ G+++++SFP P+ + WS++A +++P AF+ NL V+ S L + ++ + V Y +A +W+ +V KF IS+GI+V SY+SQ ++P++EG+M++ + +M+ ++I+ ++K
Sbjct: 111 HDKPKITAWEAGWNVTNAIQGMFVLGLPYAILHGGYLGLFLIIFAAVVCCYTGKILIACLYEENE-DGEVVRVRDSYVAIANACCAPRFPTLGGRVVNVAQIIELVMTCILYVVVSGNLMYNSFPGLPVSQKSWSIIATAVLLPCAFLKNLKAVSKFSLLCTLAHFVINILVIAYCLSRARDWAWEKVKFYIDVKKFPISIGIIVFSYTSQIFLPSLEGNMQQPSEFHCMMNWTHIAACVLK 351
The following BLAST results are available for this feature:
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