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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027818 ID=TCONS_00027818|Name=TCONS_00027818|organism=Clytia hemisphaerica|type=transcript|length=1752bp
cTAGGAAAAGAAAACAACTATAATAgcaagaaattgatttttgaagtacG
GTCAGGGcacatgaaaacaaaatatttattcagaAAGAAAGAATAAAGAC
TTACTGATTCGAGAAGACAGCCAAAAGACTTTCCATTTATGACAACCAAA
CGATACTGATCAATGGTCTGACGTGTTGCCAGAGTTGCTGGATACATATT
GACAAAATACAAGTTTTTTCAAGaacaaattgattgaaaaaagaagattg
aTGAAGGATCGACCAACTGCCCACCATCCATGAATATTGTTATTCAATTG
gagaattttgtaaaattctATTTTAGTTAATAAAATGTTTTGGGTATTTT
GTTTCAATTAAACATAAATTTCACATTATCCGAAAATGTATTATTGTTTT
AAAGATTGTGGTAATGCTCAAGGTGCCAGGAACAAATTGCTTCACATTTA
AAGTTCGTTTATTTCTCGAGAGAACGGAGAAAGGAAGAattaaaatttca
ttgaataaTTAGTATGATAGAAATGAAGTTGAACTTTCCCGAAGGAAAAC
AACACAGGAGTTTccgtgaaaataaaaaaatccctGGGTATTATCCTCGA
CAGGTTTATGAGTATTCTTTGCATAGGGAAAAAACGCtggtaaatgaaaa
agaaatcggTTTAGTGGTAGATATCAAGGCCTTGCTGGATTTCAAGCATG
CAAATGAAATACATTGATGACGACTAAGCAACATTGAAGTAACCTGAACG
CAGTTGTTATTACAATTTGAGTGACTGTAAGAGAGAAGGTTATTTTCAGC
GGCTTAAAGACTTAAACacattcaaaagctttttataAGGAAAATTTACC
TGTTTGAAGTTGATGAAGAAGATGTAATGTATTCCATTATTTGCATGAAG
TCACGCACTGCAGCTCTCGGTAGGCTCCTCTTGGAAAAAGAAACACCCCG
TTTTACCAAATATCCTTCGTGGTTGAACCATATGCTGACCATGACAATGG
ACTGAATTGATTGAAAGTCAGTGGTTCTTTGAACCATCGTCTGATGCGGG
ACGAATGTATTCGAGTATAAGCTGTAGAAGACTTCATTTACAAAAAGACA
TCagttttagaaaaatatgtTCGATGTTAATTTTACTTTATAAAATTTAT
GTTGAGTAACaatagtttttgaattttaacgaAATTTGAGTTTTAGTGCC
AAAGTGTAATGATGGTAAATTCTCTCGTTAAACGTAGGATCACTTTTAGA
TAGAAATTTTGTATGAGCcgtattttgataaaatttaatcaTGTGTTGCT
TACATTAGCCGTAATTTCACGGAAGTCATTATCATTATTTACTCAGGGAT
GAGGTGAGACAAACATATTGACAATTAACGGAATAgaattcaaaatagaa
aaaatctaaaCTTTTAAGATTATTGACGTAGAGAATCTTAAGTGGAAAAA
ACTGAGAGTGGAAAGGAGAGTTCGTTACGTAATTAGTAAAGGCTTTGGCA
AGAATTAAAGTCTGTATTTCTgaaagagagagaaagagagagagagagtt
gtTAGACAtcttgtaatttttgtttaaaccaAAGGTTCTCATCAGTTCAT
CAATTTTGATGTAAAATATGATCGCGCATTCATTCTTAGAACAATCAGAA
TTATGTAGGAAAGATTAAAAGCAAAtattctaccgggtgcgccacaaaaa
agtttctctctttaaaagtaattttctcgaaatctaaaaattttaaaaga
at Run BLAST on NCBI transcript from alignment at sc0000646:15726..17477 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027818 ID=TCONS_00027818|Name=TCONS_00027818|organism=Clytia hemisphaerica|type=transcript|length=1752bp|location=Sequence derived from alignment at sc0000646:15726..17477 (Clytia hemisphaerica)
attcttttaaaatttttagatttcgagaaaattacttttaaagagagaaa
cttttttgtggcgcacccggtagaataTTTGCTTTTAATCTTTCCTACAT
AATTCTGATTGTTCTAAGAATGAATGCGCGATCATATTTTACATCAAAAT
TGATGAACTGATGAGAACCTTtggtttaaacaaaaattacaagaTGTCTA
acaactctctctctctctttctctctctttcAGAAATACAGACTTTAATT
CTTGCCAAAGCCTTTACTAATTACGTAACGAACTCTCCTTTCCACTCTCA
GTTTTTTCCACTTAAGATTCTCTACGTCAATAATCTTAAAAGtttagatt
ttttctattttgaattcTATTCCGTTAATTGTCAATATGTTTGTCTCACC
TCATCCCTGAGTAAATAATGATAATGACTTCCGTGAAATTACGGCTAATG
TAAGCAACACAtgattaaattttatcaaaatacgGCTCATACAAAATTTC
TATCTAAAAGTGATCCTACGTTTAACGAGAGAATTTACCATCATTACACT
TTGGCACTAAAACTCAAATTtcgttaaaattcaaaaactattGTTACTCA
ACATAAATTTTATAAAGTAAAATTAACATCGAacatatttttctaaaact
GATGTCTTTTTGTAAATGAAGTCTTCTACAGCTTATACTCGAATACATTC
GTCCCGCATCAGACGATGGTTCAAAGAACCACTGACTTTCAATCAATTCA
GTCCATTGTCATGGTCAGCATATGGTTCAACCACGAAGGATATTTGGTAA
AACGGGGTGTTTCTTTTTCCAAGAGGAGCCTACCGAGAGCTGCAGTGCGT
GACTTCATGCAAATAATGGAATACATTACATCTTCTTCATCAACTTCAAA
CAGGTAAATTTTCCTtataaaaagcttttgaatgtGTTTAAGTCTTTAAG
CCGCTGAAAATAACCTTCTCTCTTACAGTCACTCAAATTGTAATAACAAC
TGCGTTCAGGTTACTTCAATGTTGCTTAGTCGTCATCAATGTATTTCATT
TGCATGCTTGAAATCCAGCAAGGCCTTGATATCTACCACTAAAccgattt
ctttttcatttaccaGCGTTTTTTCCCTATGCAAAGAATACTCATAAACC
TGTCGAGGATAATACCCagggatttttttattttcacggAAACTCCTGTG
TTGTTTTCCTTCGGGAAAGTTCAACTTCATTTCTATCATACTAAttattc
aatgaaattttaatTCTTCCTTTCTCCGTTCTCTCGAGAAATAAACGAAC
TTTAAATGTGAAGCAATTTGTTCCTGGCACCTTGAGCATTACCACAATCT
TTAAAACAATAATACATTTTCGGATAATGTGAAATTTATGTTTAATTGAA
ACAAAATACCCAAAACATTTTATTAACTAAAATagaattttacaaaattc
tcCAATTGAATAACAATATTCATGGATGGTGGGCAGTTGGTCGATCCTTC
AtcaatcttcttttttcaatcaatttgttCTTGAAAAAACTTGTATTTTG
TCAATATGTATCCAGCAACTCTGGCAACACGTCAGACCATTGATCAGTAT
CGTTTGGTTGTCATAAATGGAAAGTCTTTTGGCTGTCTTCTCGAATCAGT
AAGTCTTTATTCTTTCTTtctgaataaatattttgttttcatgtgCCCTG
ACCgtacttcaaaaatcaatttcttgcTATTATAGTTGTTTTCTTTTCCT
Ag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027818-exon-sc0000646-1491911889:15726..17477 | TCONS_00027818-exon-sc0000646-1491911889:15726..17477 | Clytia hemisphaerica | exon |
| TCONS_00027818-exon-sc0000646-1510915933:15726..17477 | TCONS_00027818-exon-sc0000646-1510915933:15726..17477 | Clytia hemisphaerica | exon |
| TCONS_00027818-exon-sc0000646-1575043694:15726..17477 | TCONS_00027818-exon-sc0000646-1575043694:15726..17477 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000646 | supercontig | sc0000646:15726..17477 . |
Blast
The following BLAST results are available for this feature:
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