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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027817 ID=TCONS_00027817|Name=TCONS_00027817|organism=Clytia hemisphaerica|type=transcript|length=2692bp
ggttcttttaaaatttttagatttcgagaaaattagtttcaaagagagaa
acttttttgtggcgcacccggtatattagGCGGGACATTGTtgcagaaag
aaagaaaatctgGCCTTCGCTCTCTTGAAAAAGAACTAAGAAATACGAAA
GGATTTCACAGTCAGATCTACTCGCTCCCAGGGAAGCTTTTCATTGGTGA
GAGACTGGCCAAACGTACAAGCCCCGTTACAAAAACGACGGAGATGCAAA
GCACTTGAATCGTGGAATCATTTTGTAATCACACCCCTGTCACACAGCCC
TATTAGAATTTTTGCCTCAGTGGGGCTAAAAGTTCCAATTGAAATCCCGG
TGaggattgaaattctattgatccaaggttaaaaaatccagtggagtaca
atttttaaacataaaaCTTCGAATAAGGATGAAGTCAAATCATTTTCCCA
CCTGGGacgaaattccagggtattttcccaccggggacgcaatttttgcc
aaattttccagtggggctggggcctCAGTGGGTCTATGGCACAGGGGTGT
TTAATCATTTTAAAGTTCCAAAAGTAAAGATGCGAACTGGAAGAAGGAAC
AGGTTTTGTTATCGAGGCTATGATTGGTCATTGGTGTAATAAATGTCAGG
ACAACACGTGTTCACGTTCAAACGTTGATAGtgaaataacatttttattt
caaaacaaaacaataaaacaaatatcaaccaatcTTTGAACACTATATTg
gggatttgaaaaaaaacaaaaacaaaaaacaatcacaTCAAGAGAAGTCT
TTAAGCTTCCAACATTCTCCAAGAGGTTTACAaagttcaaaataatcaaa
gtaTTCTCTTCAAAGGTGACCCATAATTTAACCGTCCAATGCGCCAGAAt
ctcaaaataaataattggCCATAAAATCTGAACTAGTTGTTCCCAGGGAT
ACTTATAGCTTAGTGAAAGAGTAACCATGACAACCATCCATGATCTTGGA
TGAAGGCCGTACCAATCAAATCATTaacaagaaaaatagaaaagattcAA
TGAAAGTGAGGGTCAGAACATAACTTGCAGATGTTTCTATAATTAAGGAC
TGAATAAAGCAAACGTTAGAGAGGTGAACGTTTATAAATGACTAGGTAGT
TACTGTTGCACACTTAGGGGTCAgagaatttttgaaagaaactcatctCA
CAGAAATTTATAAGTCTCGGAAAAGAAGTAAAAACTAGATGTATGTAGTG
ATGTCTCTGGTGAAGCTCAACATCAACATATATGTGCTATCCGTCTTCGA
TTCATTACAAATAGTAATGTGATTAAGAAATGTGCGATAAAATTTTTATA
GTCCACCACCACAGgataaattttaaagaaagataACCAGTAGTGCTCAC
GCTACCGATATAAGTCTCCATTCAGCGTGATCTTTCAAACACGTGTAGAG
TTTACTTTTTGGTATCTCAGAGCCACACCCCATCAGTCGGTAAAAAATTA
TCCCAGTCCCCATTGCATTAGTCCTTAGTATAAGCCAATTTGAACCTCAT
GGAGTTTCTTTAACAAAATTTGACCAGCGATAGAAAAGAcagtttttaat
gatttgtaTGGTATATGTTACTACAACCTCTACAGACTAGCGAAAGTATT
CTTCCATATGCAATAAAACTAACAGTAATACTTTTATGCTATATTGAACC
CTGCTTGTAATAGTTTACAAAGAAACTACTCTTACTCAATCGATTCTACG
ACTTCTTGTGCTTTCAAGTTCGGAAAATAAACACCTTATTAAACTCTTCT
TGGTGATGTacaatcaatttttcaataatccATAGATTTACCCAAAATAT
ATCATCATATTGAAACCAGCCAAACTAACACTATAACAGCAAGcgatcat
ttgaaaaagaagatgacGTGGGCTCTTTTGCaagcaaaaatttgattaaa
tgcGGTCAAAAATCATTAGTATCTTTAAAGCAACCGTGCATTTCAACCAG
TAACTAACCTCACAACTGATAAAATAACAGCTATAGAGCATTAAAAAACG
AACAAATGACTAATGCAATATTCATAGGTGAAGTGTCCTTTATATTCAAA
TTGCTTCCATTCACATTGCCAGCCATTGAAGGAACAAAAAGCCACACACA
AGTTAGCCTTTAGCAACCATTAAACCACCACCAGTCAATTGATGGGTAGa
ggaaagtgaaagtatatgACGTCATACTTCTTGTGGTTGAAAGCGTTTAT
CCTTTGGAGTTCATAAGTGTTCTTGGGAACAATAGTTGAGTGTCTGTAAT
ACTATGTGTTCTTGATGTTACTCTAATCTTCAGAGTCTTTCAAGTTATAg
attttgattctttatgaGTAGATAATTATTTGCAGGAGATAGTGTATGAT
TATCTGTAGCGTTGCAAGATTGTAGTATTCGCATATCAATCAACAGGTTA
TACAGTGTATCAAGTATGCAAGATGTAGCTATCAGAGAGACGATGATATA
TTCAGCAACAGTGAAGTCATTATACATCGAGAGTGAGAAATTAGACATTC
AAGAATGAATCTTCAATATGAAGCAGTGAACAATATATATAGATCTGGAT
ACGCAATATTGCAGAACACGTTTCATAAACGAATTGGAGAACAGCATAAA
TTCACTTTTTCCTCCACCCACCCATCATAACACGCATTACTC Run BLAST on NCBI transcript from alignment at sc0000646:12134..14825 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027817 ID=TCONS_00027817|Name=TCONS_00027817|organism=Clytia hemisphaerica|type=transcript|length=2692bp|location=Sequence derived from alignment at sc0000646:12134..14825 (Clytia hemisphaerica)
GAGTAATGCGTGTTATGATGGGTGGGTGGAGGAAAAAGTGAATTTATGCT
GTTCTCCAATTCGTTTATGAAACGTGTTCTGCAATATTGCGTATCCAGAT
CTATATATATTGTTCACTGCTTCATATTGAAGATTCATTCTTGAATGTCT
AATTTCTCACTCTCGATGTATAATGACTTCACTGTTGCTGAATATATCAT
CGTCTCTCTGATAGCTACATCTTGCATACTTGATACACTGTATAACCTGT
TGATTGATATGCGAATACTACAATCTTGCAACGCTACAGATAATCATACA
CTATCTCCTGCAAATAATTATCTACtcataaagaatcaaaatcTATAACT
TGAAAGACTCTGAAGATTAGAGTAACATCAAGAACACATAGTATTACAGA
CACTCAACTATTGTTCCCAAGAACACTTATGAACTCCAAAGGATAAACGC
TTTCAACCACAAGAAGTATGACGTcatatactttcactttcctCTACCCA
TCAATTGACTGGTGGTGGTTTAATGGTTGCTAAAGGCTAACTTGTGTGTG
GCTTTTTGTTCCTTCAATGGCTGGCAATGTGAATGGAAGCAATTTGAATA
TAAAGGACACTTCACCTATGAATATTGCATTAGTCATTTGTTCGTTTTTT
AATGCTCTATAGCTGTTATTTTATCAGTTGTGAGGTTAGTTACTGGTTGA
AATGCACGGTTGCTTTAAAGATACTAATGATTTTTGACCgcatttaatca
aatttttgcttGCAAAAGAGCCCACgtcatcttctttttcaaatgatcgC
TTGCTGTTATAGTGTTAGTTTGGCTGGTTTCAATATGATGATATATTTTG
GGTAAATCTATggattattgaaaaattgattgtACATCACCAAGAAGAGT
TTAATAAGGTGTTTATTTTCCGAACTTGAAAGCACAAGAAGTCGTAGAAT
CGATTGAGTAAGAGTAGTTTCTTTGTAAACTATTACAAGCAGGGTTCAAT
ATAGCATAAAAGTATTACTGTTAGTTTTATTGCATATGGAAGAATACTTT
CGCTAGTCTGTAGAGGTTGTAGTAACATATACCAtacaaatcattaaaaa
ctgTCTTTTCTATCGCTGGTCAAATTTTGTTAAAGAAACTCCATGAGGTT
CAAATTGGCTTATACTAAGGACTAATGCAATGGGGACTGGGATAATTTTT
TACCGACTGATGGGGTGTGGCTCTGAGATACCAAAAAGTAAACTCTACAC
GTGTTTGAAAGATCACGCTGAATGGAGACTTATATCGGTAGCGTGAGCAC
TACTGGTtatctttctttaaaatttatcCTGTGGTGGTGGACTATAAAAA
TTTTATCGCACATTTCTTAATCACATTACTATTTGTAATGAATCGAAGAC
GGATAGCACATATATGTTGATGTTGAGCTTCACCAGAGACATCACTACAT
ACATCTAGTTTTTACTTCTTTTCCGAGACTTATAAATTTCTGTGagatga
gtttctttcaaaaattctcTGACCCCTAAGTGTGCAACAGTAACTACCTA
GTCATTTATAAACGTTCACCTCTCTAACGTTTGCTTTATTCAGTCCTTAA
TTATAGAAACATCTGCAAGTTATGTTCTGACCCTCACTTTCATTgaatct
tttctatttttcttgttAATGATTTGATTGGTACGGCCTTCATCCAAGAT
CATGGATGGTTGTCATGGTTACTCTTTCACTAAGCTATAAGTATCCCTGG
GAACAACTAGTTCAGATTTTATGGccaattatttattttgagaTTCTGGC
GCATTGGACGGTTAAATTATGGGTCACCTTTGAAGAGAAtactttgatta
ttttgaacttTGTAAACCTCTTGGAGAATGTTGGAAGCTTAAAGACTTCT
CTTGAtgtgattgttttttgtttttgttttttttcaaatccccAATATAG
TGTTCAAAgattggttgatatttgttttattgttttgttttgaaataaaa
atgttatttcaCTATCAACGTTTGAACGTGAACACGTGTTGTCCTGACAT
TTATTACACCAATGACCAATCATAGCCTCGATAACAAAACCTGTTCCTTC
TTCCAGTTCGCATCTTTACTTTTGGAACTTTAAAATGATTAAACACCCCT
GTGCCATAGACCCACTGaggccccagccccactggaaaatttggcaaaaa
ttgcgtccccggtgggaaaataccctggaatttcgtCCCAGGTGGGAAAA
TGATTTGACTTCATCCTTATTCGAAGttttatgtttaaaaattgtactcc
actggattttttaaccttggatcaatagaatttcaatcctCACCGGGATT
TCAATTGGAACTTTTAGCCCCACTGAGGCAAAAATTCTAATAGGGCTGTG
TGACAGGGGTGTGATTACAAAATGATTCCACGATTCAAGTGCTTTGCATC
TCCGTCGTTTTTGTAACGGGGCTTGTACGTTTGGCCAGTCTCTCACCAAT
GAAAAGCTTCCCTGGGAGCGAGTAGATCTGACTGTGAAATCCTTTCGTAT
TTCTTAGTTCTTTTTCAAGAGAGCGAAGGCcagattttctttctttctgc
aACAATGTCCCGCctaatataccgggtgcgccacaaaaaagtttctctct
ttgaaactaattttctcgaaatctaaaaattttaaaagaacc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027817-exon-sc0000646-1491911889:12134..14825 | TCONS_00027817-exon-sc0000646-1491911889:12134..14825 | Clytia hemisphaerica | exon |
| TCONS_00027817-exon-sc0000646-1510915933:12134..14825 | TCONS_00027817-exon-sc0000646-1510915933:12134..14825 | Clytia hemisphaerica | exon |
| TCONS_00027817-exon-sc0000646-1575043694:12134..14825 | TCONS_00027817-exon-sc0000646-1575043694:12134..14825 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000646 | supercontig | sc0000646:12134..14825 . |
Blast
The following BLAST results are available for this feature:
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