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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027799 ID=TCONS_00027799|Name=TCONS_00027799|organism=Clytia hemisphaerica|type=transcript|length=1468bp
TTTTTAAACCGTTTATTATAAACATGTCCTCTTCTTTTGTGAACGAGCTT
TTCCTTCCCCGAGTTCCTGAAGTTGTGCTGATACTTTGGGTGTCGATTTT
CGAAGAAGTGTTCAGTACTTGCTGTCGAGCGCTACTTCTTGTTGTTGGTC
TGCTGATGGCCGTTTCGTCAGAATCCGGAACCTTTGCAACTTCGGTATCA
GTTGACTCGTGGTCGTCGCAAACATCTTCCTCAACTTTGTTCTCGACTTG
CGCGGTTTGGCTTGACTGTATCAACCTTTCATTGCACTGAGAAGCCTTTT
GTGCAACGATTCTcgaatttttctttctgtaatgGACTTTGGCGACGTTC
AACGTGTGCTTCTGGTCTTGGCTGATCATTTCTTGGTCAGCGGGAGACAA
GTGTTCGGAACTGGCAGTCTCATTGATCTGACGGTAACGTGTCGGATTCA
CATACTTACCGATGGCTTGGTACACCATTCTTCCAAAAACATCGCCCAAG
TTAGACAGTTGTCCACCGTTCTTGCAAACGAGTAGAAAGTCACACGTAGC
ATTCAGTTTTGGCCTCACGAAATCAGTGTAGTCTTTAGCTTTCTCGAGAG
CGTAGTCGGAAAACAACAACGAATCGAAACCGTATGTCGCCTCAGTTTTA
AAACGCGTTTGATCAATGACGCCGTCTTTTAATGCAGATTTCATCATGTC
GACTGTTAAAAATTGATACGTCATTGGGCGGCTGCCTTTAACTCTCAGGA
ACAGGACCGTCAGCAAGAACGAGGTCGCGAAAGACAAATCGTGCGGAATG
GAGACGTCTTCTTTGGCCAGACTGATGACTTGTGTGTAGCGGTTTTCGTG
AAAGGGTACCACCTTTTGCAAGTCTGCCAACGACGCCCAACAGTTCATGC
TCTCGAAATGTTCGACTGAAAGTACTGTGTTCCACTCTACACGCATCTTC
TTTCTGAGACATTGCTTTGCTCTCGAAACGAAAACTTCCGTGGTCAACAT
CACGGATATCTTCTGAGGAGTCAGTCCTTTGAAACGCAAAAAGTCCAGTC
CGTGGCTGATGGATTGCAAGTAGGAAATGATTCCAGAGCTCGCCAGCTTG
CACTCTTCTTCCAAGTAGGACACAAACTTTTGAATGAGGTCGACGGATCC
GATGCAATACTCCAATGTCGTCCTCGTCAACTCTTGGTTGTCTTCCAAGT
TCTTGCAACAAAACTTGCAAAACTTAAGAATCTTGACGCACAGTTGGTCG
GCTTGGCTCATGTCTTTTCCACCACCACCGGCGCTGCAAATCCAATTGAC
AAAGTCTTTTGCCAATTGACATTCTTTAGAAAACGAAGGCATGTCCCAAG
ACTTTTTTCGCTGGCTCGGTCTTTTCGCAGGAGGGTTCATCGTTTGAGGA
AAGGCTTCTTCCACATCTGGCTTCTTGTCGAAATAATAAAACCAGGCGTG
CTTAACGAACACATGCTT Run BLAST on NCBI protein sequence of TCONS_00027799-protein >TCONS_00027799-protein ID=TCONS_00027799-protein|Name=TCONS_00027799-protein|organism=Clytia hemisphaerica|type=polypeptide|length=489bp
KHVFVKHAWFYYFDKKPDVEEAFPQTMNPPAKRPSQRKKSWDMPSFSKEC
QLAKDFVNWICSAGGGGKDMSQADQLCVKILKFCKFCCKNLEDNQELTRT
TLEYCIGSVDLIQKFVSYLEEECKLASSGIISYLQSISHGLDFLRFKGLT
PQKISVMLTTEVFVSRAKQCLRKKMRVEWNTVLSVEHFESMNCWASLADL
QKVVPFHENRYTQVISLAKEDVSIPHDLSFATSFLLTVLFLRVKGSRPMT
YQFLTVDMMKSALKDGVIDQTRFKTEATYGFDSLLFSDYALEKAKDYTDF
VRPKLNATCDFLLVCKNGGQLSNLGDVFGRMVYQAIGKYVNPTRYRQINE
TASSEHLSPADQEMISQDQKHTLNVAKVHYRKKNSRIVAQKASQCNERLI
QSSQTAQVENKVEEDVCDDHESTDTEVAKVPDSDETAISRPTTRSSARQQ
VLNTSSKIDTQSISTTSGTRGRKSSFTKEEDMFIINGLK Run BLAST on NCBI transcript from alignment at sc0000645:180818..182285 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027799 ID=TCONS_00027799|Name=TCONS_00027799|organism=Clytia hemisphaerica|type=transcript|length=1468bp|location=Sequence derived from alignment at sc0000645:180818..182285 (Clytia hemisphaerica)
AAGCATGTGTTCGTTAAGCACGCCTGGTTTTATTATTTCGACAAGAAGCC
AGATGTGGAAGAAGCCTTTCCTCAAACGATGAACCCTCCTGCGAAAAGAC
CGAGCCAGCGAAAAAAGTCTTGGGACATGCCTTCGTTTTCTAAAGAATGT
CAATTGGCAAAAGACTTTGTCAATTGGATTTGCAGCGCCGGTGGTGGTGG
AAAAGACATGAGCCAAGCCGACCAACTGTGCGTCAAGATTCTTAAGTTTT
GCAAGTTTTGTTGCAAGAACTTGGAAGACAACCAAGAGTTGACGAGGACG
ACATTGGAGTATTGCATCGGATCCGTCGACCTCATTCAAAAGTTTGTGTC
CTACTTGGAAGAAGAGTGCAAGCTGGCGAGCTCTGGAATCATTTCCTACT
TGCAATCCATCAGCCACGGACTGGACTTTTTGCGTTTCAAAGGACTGACT
CCTCAGAAGATATCCGTGATGTTGACCACGGAAGTTTTCGTTTCGAGAGC
AAAGCAATGTCTCAGAAAGAAGATGCGTGTAGAGTGGAACACAGTACTTT
CAGTCGAACATTTCGAGAGCATGAACTGTTGGGCGTCGTTGGCAGACTTG
CAAAAGGTGGTACCCTTTCACGAAAACCGCTACACACAAGTCATCAGTCT
GGCCAAAGAAGACGTCTCCATTCCGCACGATTTGTCTTTCGCGACCTCGT
TCTTGCTGACGGTCCTGTTCCTGAGAGTTAAAGGCAGCCGCCCAATGACG
TATCAATTTTTAACAGTCGACATGATGAAATCTGCATTAAAAGACGGCGT
CATTGATCAAACGCGTTTTAAAACTGAGGCGACATACGGTTTCGATTCGT
TGTTGTTTTCCGACTACGCTCTCGAGAAAGCTAAAGACTACACTGATTTC
GTGAGGCCAAAACTGAATGCTACGTGTGACTTTCTACTCGTTTGCAAGAA
CGGTGGACAACTGTCTAACTTGGGCGATGTTTTTGGAAGAATGGTGTACC
AAGCCATCGGTAAGTATGTGAATCCGACACGTTACCGTCAGATCAATGAG
ACTGCCAGTTCCGAACACTTGTCTCCCGCTGACCAAGAAATGATCAGCCA
AGACCAGAAGCACACGTTGAACGTCGCCAAAGTCcattacagaaagaaaa
attcgAGAATCGTTGCACAAAAGGCTTCTCAGTGCAATGAAAGGTTGATA
CAGTCAAGCCAAACCGCGCAAGTCGAGAACAAAGTTGAGGAAGATGTTTG
CGACGACCACGAGTCAACTGATACCGAAGTTGCAAAGGTTCCGGATTCTG
ACGAAACGGCCATCAGCAGACCAACAACAAGAAGTAGCGCTCGACAGCAA
GTACTGAACACTTCTTCGAAAATCGACACCCAAAGTATCAGCACAACTTC
AGGAACTCGGGGAAGGAAAAGCTCGTTCACAAAAGAAGAGGACATGTTTA
TAATAAACGGTTTAAAAA Coding sequence (CDS) from alignment at sc0000645:180818..182285 >TCONS_00027799 ID=TCONS_00027799|Name=TCONS_00027799|organism=Clytia hemisphaerica|type=CDS|length=1467bp|location=Sequence derived from alignment at sc0000645:180818..182285 (Clytia hemisphaerica)
AAGCATGTGTTCGTTAAGCACGCCTGGTTTTATTATTTCGACAAGAAGCC
AGATGTGGAAGAAGCCTTTCCTCAAACGATGAACCCTCCTGCGAAAAGAC
CGAGCCAGCGAAAAAAGTCTTGGGACATGCCTTCGTTTTCTAAAGAATGT
CAATTGGCAAAAGACTTTGTCAATTGGATTTGCAGCGCCGGTGGTGGTGG
AAAAGACATGAGCCAAGCCGACCAACTGTGCGTCAAGATTCTTAAGTTTT
GCAAGTTTTGTTGCAAGAACTTGGAAGACAACCAAGAGTTGACGAGGACG
ACATTGGAGTATTGCATCGGATCCGTCGACCTCATTCAAAAGTTTGTGTC
CTACTTGGAAGAAGAGTGCAAGCTGGCGAGCTCTGGAATCATTTCCTACT
TGCAATCCATCAGCCACGGACTGGACTTTTTGCGTTTCAAAGGACTGACT
CCTCAGAAGATATCCGTGATGTTGACCACGGAAGTTTTCGTTTCGAGAGC
AAAGCAATGTCTCAGAAAGAAGATGCGTGTAGAGTGGAACACAGTACTTT
CAGTCGAACATTTCGAGAGCATGAACTGTTGGGCGTCGTTGGCAGACTTG
CAAAAGGTGGTACCCTTTCACGAAAACCGCTACACACAAGTCATCAGTCT
GGCCAAAGAAGACGTCTCCATTCCGCACGATTTGTCTTTCGCGACCTCGT
TCTTGCTGACGGTCCTGTTCCTGAGAGTTAAAGGCAGCCGCCCAATGACG
TATCAATTTTTAACAGTCGACATGATGAAATCTGCATTAAAAGACGGCGT
CATTGATCAAACGCGTTTTAAAACTGAGGCGACATACGGTTTCGATTCGT
TGTTGTTTTCCGACTACGCTCTCGAGAAAGCTAAAGACTACACTGATTTC
GTGAGGCCAAAACTGAATGCTACGTGTGACTTTCTACTCGTTTGCAAGAA
CGGTGGACAACTGTCTAACTTGGGCGATGTTTTTGGAAGAATGGTGTACC
AAGCCATCGGTAAGTATGTGAATCCGACACGTTACCGTCAGATCAATGAG
ACTGCCAGTTCCGAACACTTGTCTCCCGCTGACCAAGAAATGATCAGCCA
AGACCAGAAGCACACGTTGAACGTCGCCAAAGTCcattacagaaagaaaa
attcgAGAATCGTTGCACAAAAGGCTTCTCAGTGCAATGAAAGGTTGATA
CAGTCAAGCCAAACCGCGCAAGTCGAGAACAAAGTTGAGGAAGATGTTTG
CGACGACCACGAGTCAACTGATACCGAAGTTGCAAAGGTTCCGGATTCTG
ACGAAACGGCCATCAGCAGACCAACAACAAGAAGTAGCGCTCGACAGCAA
GTACTGAACACTTCTTCGAAAATCGACACCCAAAGTATCAGCACAACTTC
AGGAACTCGGGGAAGGAAAAGCTCGTTCACAAAAGAAGAGGACATGTTTA
TAATAAACGGTTTAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027799-exon-sc0000645-1491911889:180818..182285 | TCONS_00027799-exon-sc0000645-1491911889:180818..182285 | Clytia hemisphaerica | exon |
| TCONS_00027799-exon-sc0000645-1510915933:180818..182285 | TCONS_00027799-exon-sc0000645-1510915933:180818..182285 | Clytia hemisphaerica | exon |
| TCONS_00027799-exon-sc0000645-1575043694:180818..182285 | TCONS_00027799-exon-sc0000645-1575043694:180818..182285 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000645 | supercontig | sc0000645:180818..182285 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR023109 | Integrase_recombinase_N |
Blast
The following BLAST results are available for this feature:
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