TCONS_00027796 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027796
Unique NameTCONS_00027796
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length659

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027796 ID=TCONS_00027796|Name=TCONS_00027796|organism=Clytia hemisphaerica|type=transcript|length=659bp
GCGAAGAACAGTAAAATGGCGCTAACAGGAAGTCGAATCTTCATATTCAT
CTGTATACAATGGTTCGCGTATACATCAGCCACTGGCAATGAAACAGTAC
ATGTCTTGGTTGACCGATCAATCTCCAATCTACAGAAAATCAAACTAAAG
ATGAAGTTACTTTCTCAGGTCAAAAAGATGTATGGCGATTGTTTGCCATG
TAGATCAATCTCTAATAGCAAAAGCTGTGATTGTACAGCCATCAAACCGA
TGGAAGATTGTCTGGAGTTTTTGCAGAACGGCTACACCAAGAATGGAATC
TACAAAGTAACACAGAGAGAAAAGACTGTCTACTGCGATCAAACCACTCA
AAATGGTGGCTGGACGGTTTTCTTAAGGAGACAAGATGGATCCACAGACT
TCCAACAGAACTGGCTGGACTACAAATATGGTTTTGGTAAGCTGACCAGT
GAATTTTGGCTTGGAAATGAAATAGTCCATGATTTGACCAAACCATCAGT
GGCTCCAAAGAAGTCAGAGCTGTTGATCAATATGCGAATGAAAGGACAAA
CCAAATTAGTTTTCGCCAAATACGACACTTTTGAAATTGGAGATGAGGCG
AGCAAATACACATTGAAGATCAGTGGTGTATCAGGCAATGCACCTCATTC
GACTGGATC
Run BLAST on NCBI

protein sequence of TCONS_00027796-protein

>TCONS_00027796-protein ID=TCONS_00027796-protein|Name=TCONS_00027796-protein|organism=Clytia hemisphaerica|type=polypeptide|length=219bp
AKNSKMALTGSRIFIFICIQWFAYTSATGNETVHVLVDRSISNLQKIKLK
MKLLSQVKKMYGDCLPCRSISNSKSCDCTAIKPMEDCLEFLQNGYTKNGI
YKVTQREKTVYCDQTTQNGGWTVFLRRQDGSTDFQQNWLDYKYGFGKLTS
EFWLGNEIVHDLTKPSVAPKKSELLINMRMKGQTKLVFAKYDTFEIGDEA
SKYTLKISGVSGNAPHSTG
Run BLAST on NCBI

transcript from alignment at sc0000645:70986..71644

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027796 ID=TCONS_00027796|Name=TCONS_00027796|organism=Clytia hemisphaerica|type=transcript|length=659bp|location=Sequence derived from alignment at sc0000645:70986..71644 (Clytia hemisphaerica)
GATCCAGTCGAATGAGGTGCATTGCCTGATACACCACTGATCTTCAATGT
GTATTTGCTCGCCTCATCTCCAATTTCAAAAGTGTCGTATTTGGCGAAAA
CTAATTTGGTTTGTCCTTTCATTCGCATATTGATCAACAGCTCTGACTTC
TTTGGAGCCACTGATGGTTTGGTCAAATCATGGACTATTTCATTTCCAAG
CCAAAATTCACTGGTCAGCTTACCAAAACCATATTTGTAGTCCAGCCAGT
TCTGTTGGAAGTCTGTGGATCCATCTTGTCTCCTTAAGAAAACCGTCCAG
CCACCATTTTGAGTGGTTTGATCGCAGTAGACAGTCTTTTCTCTCTGTGT
TACTTTGTAGATTCCATTCTTGGTGTAGCCGTTCTGCAAAAACTCCAGAC
AATCTTCCATCGGTTTGATGGCTGTACAATCACAGCTTTTGCTATTAGAG
ATTGATCTACATGGCAAACAATCGCCATACATCTTTTTGACCTGAGAAAG
TAACTTCATCTTTAGTTTGATTTTCTGTAGATTGGAGATTGATCGGTCAA
CCAAGACATGTACTGTTTCATTGCCAGTGGCTGATGTATACGCGAACCAT
TGTATACAGATGAATATGAAGATTCGACTTCCTGTTAGCGCCATTTTACT
GTTCTTCGC

Coding sequence (CDS) from alignment at sc0000645:70986..71644

>TCONS_00027796 ID=TCONS_00027796|Name=TCONS_00027796|organism=Clytia hemisphaerica|type=CDS|length=657bp|location=Sequence derived from alignment at sc0000645:70986..71644 (Clytia hemisphaerica)
TCCAGTCGAATGAGGTGCATTGCCTGATACACCACTGATCTTCAATGTGT
ATTTGCTCGCCTCATCTCCAATTTCAAAAGTGTCGTATTTGGCGAAAACT
AATTTGGTTTGTCCTTTCATTCGCATATTGATCAACAGCTCTGACTTCTT
TGGAGCCACTGATGGTTTGGTCAAATCATGGACTATTTCATTTCCAAGCC
AAAATTCACTGGTCAGCTTACCAAAACCATATTTGTAGTCCAGCCAGTTC
TGTTGGAAGTCTGTGGATCCATCTTGTCTCCTTAAGAAAACCGTCCAGCC
ACCATTTTGAGTGGTTTGATCGCAGTAGACAGTCTTTTCTCTCTGTGTTA
CTTTGTAGATTCCATTCTTGGTGTAGCCGTTCTGCAAAAACTCCAGACAA
TCTTCCATCGGTTTGATGGCTGTACAATCACAGCTTTTGCTATTAGAGAT
TGATCTACATGGCAAACAATCGCCATACATCTTTTTGACCTGAGAAAGTA
ACTTCATCTTTAGTTTGATTTTCTGTAGATTGGAGATTGATCGGTCAACC
AAGACATGTACTGTTTCATTGCCAGTGGCTGATGTATACGCGAACCATTG
TATACAGATGAATATGAAGATTCGACTTCCTGTTAGCGCCATTTTACTGT
TCTTCGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015702XLOC_015702Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027796-exon-sc0000645-1491911889:70986..71644TCONS_00027796-exon-sc0000645-1491911889:70986..71644Clytia hemisphaericaexon
TCONS_00027796-exon-sc0000645-1510915933:70986..71644TCONS_00027796-exon-sc0000645-1510915933:70986..71644Clytia hemisphaericaexon
TCONS_00027796-exon-sc0000645-1575043694:70986..71644TCONS_00027796-exon-sc0000645-1575043694:70986..71644Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027796-proteinTCONS_00027796-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000645supercontigsc0000645:70986..71644 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.106319	0	0.101361	0.0948925	2.47664	0.905215	1.364	4.31089	15.9275	13.6958	153.029	184.777	25.2839	24.6444	13.5382	13.8479	15.9006	12.5744	131.959	94.9848	83.2423	100.461	7.98163	8.06514	512.373	694.939
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002181Fibrinogen_a/b/g_C_dom
IPR014716Fibrinogen_a/b/g_C_1
Blast
[Close]
BLAST of TCONS_00027796 vs. Swiss-Prot (Human)
Match: TENR (Tenascin-R OS=Homo sapiens GN=TNR PE=1 SV=3)

HSP 1 Score: 109.383 bits (272), Expect = 1.089e-26
Identity = 57/138 (41.30%), Postives = 80/138 (57.97%), Query Frame = 1 
Query:  253 EDCLEFLQNGYTKNGIYKV-----TQREKTVYCDQTTQNGGWTVFLRRQDGSTDFQQNWLDYKYGFGKLTSEFWLGNEIVHDLTKPSVAPKKSELLINMRMKGQTKLVFAKYDTFEIGDEASKYTLKISGVSGNAPHS 651
            +DC + L NG T +G+Y +       ++  VYCD TT  GGW VF RRQ+G TDF + W DY+ GFG +  EFWLG + +H +T    +  + EL ++MR  GQ +  FA YD F + D  + Y L+I   +G A  S
Sbjct: 1136 QDCAQHLMNGDTLSGVYPIFLNGELSQKLQVYCDMTTDGGGWIVFQRRQNGQTDFFRKWADYRVGFGNVEDEFWLGLDNIHRIT----SQGRYELRVDMR-DGQ-EAAFASYDRFSVEDSRNLYKLRIGSYNGTAGDS 1267
The following BLAST results are available for this feature:
BLAST of TCONS_00027796 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TENR1.089e-2641.30Tenascin-R OS=Homo sapiens GN=TNR PE=1 SV=3[more]
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