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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027770 ID=TCONS_00027770|Name=TCONS_00027770|organism=Clytia hemisphaerica|type=transcript|length=1849bpRun BLAST on NCBI protein sequence of TCONS_00027770-protein >TCONS_00027770-protein ID=TCONS_00027770-protein|Name=TCONS_00027770-protein|organism=Clytia hemisphaerica|type=polypeptide|length=426bp LQLKQNKIIKNTMTRTKQGARRGRNRGGPYGGRPAGPFGPHGMRRGPMGMRun BLAST on NCBI transcript from alignment at sc0000645:9131..21008+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00027770 ID=TCONS_00027770|Name=TCONS_00027770|organism=Clytia hemisphaerica|type=transcript|length=11878bp|location=Sequence derived from alignment at sc0000645:9131..21008+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000645:9131..21008+ >TCONS_00027770 ID=TCONS_00027770|Name=TCONS_00027770|organism=Clytia hemisphaerica|type=CDS|length=12810bp|location=Sequence derived from alignment at sc0000645:9131..21008+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00027770 vs. Swiss-Prot (Human)
Match: ILF2 (Interleukin enhancer-binding factor 2 OS=Homo sapiens GN=ILF2 PE=1 SV=2) HSP 1 Score: 317.005 bits (811), Expect = 2.936e-101 Identity = 166/332 (50.00%), Postives = 228/332 (68.67%), Query Frame = 2
Query: 197 HYAFDPVVVEPHFGKADPPSNETALNDALLKKSQQLTPTTLEQGSVQNLVSKMESVLEGLILSPTGLNIPVEEMRAVGSFKKGTMLAGHPVADLVIILKETPGAADIENLANKVQEKLKEATPSEDFPTQANEGGFNTTSSERALVRVLVTTLPKNLFEVDTQKHVDSKLLEGALATIRHARWFEESASHTTIRFLIRLLKDLKKRFAGLAGLTPWLIDLLA-FKSATGPNGSNLPITXXXXXXXXXXXXGCFLPGSVGILDPCESGQVRAHSVLGLEEQDLLCMTSQTLLRTLSHGAYNEILGGDGAVSTSLDTDITSWGGTIVTPGEPAY 1189
H FD + E F + P +ET+ ++ALLK++Q L P + EQ S+ +LV+K+ +V++ LI++P + +EE+R VGS+KKGTM GH VADLV+ILK P + L NKV E L+ PSE NE GF +SS+ A V++L+TT+P NL ++D + H+D K+L+ ALA IRHARWFEE+AS +T++ LIRLLKDL+ RF G LTPW++DLL + P L + A+RR LQ+LAAG FLPGSVGI DPCESG R H+V+ LE+QD++C T+QTL+R LSHG + +ILG +G S L ++I++W G IVTP E AY
Sbjct: 29 HIPFDFYLCEMAFPRVKPAPDETSFSEALLKRNQDLAPNSAEQASILSLVTKINNVIDNLIVAPGTFEVQIEEVRQVGSYKKGTMTTGHNVADLVVILKILPTLEAVAALGNKVVESLRAQDPSEVLTMLTNETGFEISSSD-ATVKILITTVPPNLRKLDPELHLDIKVLQSALAAIRHARWFEENASQSTVKVLIRLLKDLRIRFPGFEPLTPWILDLLGHYAVMNNPTRQPLALNVAYRRCLQILAAGLFLPGSVGITDPCESGNFRVHTVMTLEQQDMVCYTAQTLVRILSHGGFRKILGQEGDAS-YLASEISTWDGVIVTPSEKAY 358 The following BLAST results are available for this feature:
BLAST of TCONS_00027770 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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