TCONS_00027745 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027745
Unique NameTCONS_00027745
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length807

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027745 ID=TCONS_00027745|Name=TCONS_00027745|organism=Clytia hemisphaerica|type=transcript|length=807bp
CCCCATTTTACTAGTTTTGCAGATTTTTGCCCATATTTAGAAATTGCAAT
TGCTAGACTATCCTTTCATTGAAAGGATTTGTACTgaaaagtgacgtcat
caaaaatgctCATACTGGAACTCCTTACCATACAGACAAAACGAAACTTA
GTGTAAATTTTACGGTATTTTGAACCAAAAGACCTTTTATTCGTTAAAAA
GGTAGGGTGGCATCCACTGGCAACCATTAATAAAGGGTATTTTTCAAAGT
GTTCTTCTAATCTTCCAAAAAAGGCTGTTATTGTTATATGCAAGATTTCA
attgataaataaatttttcagcagTATTAAAAACTGCTGCTGATGATATA
CAATTTTCCTTGCGTGGTCAGCACGGCTGAAAATATCCTTCCATTGTGAA
AACGCAACAAATACTCTTTGAAGTAAACAATTACATATAAGTTCTGTTTG
ACAAGTGATTCAATCCACACACATTCAAGATGTCTTTTGAGGTAAATTGA
CCATGGGATTcccacaaaaaataaatataatgaaGTAAAATCAATATCCC
AGCAAAACATGAAGAGAGTACTGAACGTCCTCTCTTGGAAAGTTAGTGTG
GTCTGCCAGGGTTCTACTTCCTTCCATCTAGCCAAACTAAGCAGCAGAAG
TAGGGCTTACGtgcctttaaaaaaaggtctttGTCATTGATGGATAATCT
GATACAAGTTCAATGGGTCCATAATCTGCATCAATTTGAACCAGTCTGTT
TCATCTTCTTGTTCAcacaaaaaatttttattttgatttctattaatttt
tcgctct
Run BLAST on NCBI

transcript from alignment at sc0000643:175407..176213

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027745 ID=TCONS_00027745|Name=TCONS_00027745|organism=Clytia hemisphaerica|type=transcript|length=807bp|location=Sequence derived from alignment at sc0000643:175407..176213 (Clytia hemisphaerica)
agagcgaaaaattaatagaaatcaaaataaaaattttttgtgTGAACAAG
AAGATGAAACAGACTGGTTCAAATTGATGCAGATTATGGACCCATTGAAC
TTGTATCAGATTATCCATCAATGACaaagacctttttttaaaggcaCGTA
AGCCCTACTTCTGCTGCTTAGTTTGGCTAGATGGAAGGAAGTAGAACCCT
GGCAGACCACACTAACTTTCCAAGAGAGGACGTTCAGTACTCTCTTCATG
TTTTGCTGGGATATTGATTTTACttcattatatttattttttgtgggAAT
CCCATGGTCAATTTACCTCAAAAGACATCTTGAATGTGTGTGGATTGAAT
CACTTGTCAAACAGAACTTATATGTAATTGTTTACTTCAAAGAGTATTTG
TTGCGTTTTCACAATGGAAGGATATTTTCAGCCGTGCTGACCACGCAAGG
AAAATTGTATATCATCAGCAGCAGTTTTTAATActgctgaaaaatttatt
tatcaatTGAAATCTTGCATATAACAATAACAGCCTTTTTTGGAAGATTA
GAAGAACACTTTGAAAAATACCCTTTATTAATGGTTGCCAGTGGATGCCA
CCCTACCTTTTTAACGAATAAAAGGTCTTTTGGTTCAAAATACCGTAAAA
TTTACACTAAGTTTCGTTTTGTCTGTATGGTAAGGAGTTCCAGTATGagc
atttttgatgacgtcacttttcAGTACAAATCCTTTCAATGAAAGGATAG
TCTAGCAATTGCAATTTCTAAATATGGGCAAAAATCTGCAAAACTAGTAA
AATGGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015665XLOC_015665Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027745-exon-sc0000643-1491911889:175407..176213TCONS_00027745-exon-sc0000643-1491911889:175407..176213Clytia hemisphaericaexon
TCONS_00027745-exon-sc0000643-1510915933:175407..176213TCONS_00027745-exon-sc0000643-1510915933:175407..176213Clytia hemisphaericaexon
TCONS_00027745-exon-sc0000643-1575043694:175407..176213TCONS_00027745-exon-sc0000643-1575043694:175407..176213Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000643supercontigsc0000643:175407..176213 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0671734	0	0	0.063222	0	0.214222	0.299964	0.185777	0.0601065	0.0395117	0.0394567	0.0819524	0.101064	0.14461	0	0.0456488	0	0	0	0.0839361	0.0680235	0.123687	0.0636971	0.0568482	0	0	0.0658487	0.201268
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027745 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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