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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027732 ID=TCONS_00027732|Name=TCONS_00027732|organism=Clytia hemisphaerica|type=transcript|length=865bp
TCAGAattgaatttataaaaaatgatcACATCCCAAATACCATTAGATAT
TGCAATCATAGAATTAACAGAGTCTAGATAATCTCTTGTATCAGGGTTCT
TAAAAAATTTGGAATAGTCGTCTGCAAACTTATCCGGTTGAAAAACTCGG
CTAATAAATAACATTACTACACCAGGGACGATGGTTAAGAAATAGCTAGC
CGTTATCCATATACACATTTTGAGAGCTCTCATTGAGCGCTTTTTTGTTA
AATTACGTTGTCTACTTTGTTCTTCTTGTGTCGAGCTAACAAAAGTTGCA
GCAATATCCTTACATTGCCTCTTGACCAAACGGTATAAATATATATTGCA
AATCAAGATTGTGATCCCACTAATATTCGCATACAAGATTGCAAAAAGAT
ATGCCAGTGTTGAAAATAACCTCCAAACAGAAAATATCACCAAGAGTGAA
AGACTTCCCAACACAGTAAGTATAGCAtgttttttagtcaaattttcgTA
AACGAAGGGCTTGTAAACTGAGATGAACCTTACGGTCGATAATAAAGTAC
TGAAACAAATCGTCAGACCCACACACAAATCACGGGTGTTTAAGGTTGCT
GTTTTTAATGCCAGATTTTTACTACCAAAGAAGAGTGCCCATAACACGGT
CATATATGCCATATTCGATAGAGCATGCGATGAAAATAGCAAGACAATTA
ATATGTTCGGGAAGCGTGATCTAAGACTCCTAGATTTTGTGATCGTGACT
ACAGAGATCACGTTAAGCATGAACGTGACTACCATTTTGACCACTAGGAT
GGTCACCAGTAAAACCATCGACCAATGAATCATTTTGgaggtttttattt
ttcagttaatATGAC Run BLAST on NCBI protein sequence of TCONS_00027732-protein >TCONS_00027732-protein ID=TCONS_00027732-protein|Name=TCONS_00027732-protein|organism=Clytia hemisphaerica|type=polypeptide|length=277bp
MIHWSMVLLVTILVVKMVVTFMLNVISVVTITKSRSLRSRFPNILIVLLF
SSHALSNMAYMTVLWALFFGSKNLALKTATLNTRDLCVGLTICFSTLLST
VRFISVYKPFVYENLTKKHAILTVLGSLSLLVIFSVWRLFSTLAYLFAIL
YANISGITILICNIYLYRLVKRQCKDIAATFVSSTQEEQSRQRNLTKKRS
MRALKMCIWITASYFLTIVPGVVMLFISRVFQPDKFADDYSKFFKNPDTR
DYLDSVNSMIAISNGIWDVIIFYKFNS Run BLAST on NCBI transcript from alignment at sc0000642:85980..86844 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027732 ID=TCONS_00027732|Name=TCONS_00027732|organism=Clytia hemisphaerica|type=transcript|length=865bp|location=Sequence derived from alignment at sc0000642:85980..86844 (Clytia hemisphaerica)
GTCATattaactgaaaaataaaaacctcCAAAATGATTCATTGGTCGATG
GTTTTACTGGTGACCATCCTAGTGGTCAAAATGGTAGTCACGTTCATGCT
TAACGTGATCTCTGTAGTCACGATCACAAAATCTAGGAGTCTTAGATCAC
GCTTCCCGAACATATTAATTGTCTTGCTATTTTCATCGCATGCTCTATCG
AATATGGCATATATGACCGTGTTATGGGCACTCTTCTTTGGTAGTAAAAA
TCTGGCATTAAAAACAGCAACCTTAAACACCCGTGATTTGTGTGTGGGTC
TGACGATTTGTTTCAGTACTTTATTATCGACCGTAAGGTTCATCTCAGTT
TACAAGCCCTTCGTTTAcgaaaatttgactaaaaaacaTGCTATACTTAC
TGTGTTGGGAAGTCTTTCACTCTTGGTGATATTTTCTGTTTGGAGGTTAT
TTTCAACACTGGCATATCTTTTTGCAATCTTGTATGCGAATATTAGTGGG
ATCACAATCTTGATTTGCAATATATATTTATACCGTTTGGTCAAGAGGCA
ATGTAAGGATATTGCTGCAACTTTTGTTAGCTCGACACAAGAAGAACAAA
GTAGACAACGTAATTTAACAAAAAAGCGCTCAATGAGAGCTCTCAAAATG
TGTATATGGATAACGGCTAGCTATTTCTTAACCATCGTCCCTGGTGTAGT
AATGTTATTTATTAGCCGAGTTTTTCAACCGGATAAGTTTGCAGACGACT
ATTCCAAATTTTTTAAGAACCCTGATACAAGAGATTATCTAGACTCTGTT
AATTCTATGATTGCAATATCTAATGGTATTTGGGATGTgatcatttttta
taaattcaatTCTGA Coding sequence (CDS) from alignment at sc0000642:85980..86844 >TCONS_00027732 ID=TCONS_00027732|Name=TCONS_00027732|organism=Clytia hemisphaerica|type=CDS|length=831bp|location=Sequence derived from alignment at sc0000642:85980..86844 (Clytia hemisphaerica)
ATGATTCATTGGTCGATGGTTTTACTGGTGACCATCCTAGTGGTCAAAAT
GGTAGTCACGTTCATGCTTAACGTGATCTCTGTAGTCACGATCACAAAAT
CTAGGAGTCTTAGATCACGCTTCCCGAACATATTAATTGTCTTGCTATTT
TCATCGCATGCTCTATCGAATATGGCATATATGACCGTGTTATGGGCACT
CTTCTTTGGTAGTAAAAATCTGGCATTAAAAACAGCAACCTTAAACACCC
GTGATTTGTGTGTGGGTCTGACGATTTGTTTCAGTACTTTATTATCGACC
GTAAGGTTCATCTCAGTTTACAAGCCCTTCGTTTAcgaaaatttgactaa
aaaacaTGCTATACTTACTGTGTTGGGAAGTCTTTCACTCTTGGTGATAT
TTTCTGTTTGGAGGTTATTTTCAACACTGGCATATCTTTTTGCAATCTTG
TATGCGAATATTAGTGGGATCACAATCTTGATTTGCAATATATATTTATA
CCGTTTGGTCAAGAGGCAATGTAAGGATATTGCTGCAACTTTTGTTAGCT
CGACACAAGAAGAACAAAGTAGACAACGTAATTTAACAAAAAAGCGCTCA
ATGAGAGCTCTCAAAATGTGTATATGGATAACGGCTAGCTATTTCTTAAC
CATCGTCCCTGGTGTAGTAATGTTATTTATTAGCCGAGTTTTTCAACCGG
ATAAGTTTGCAGACGACTATTCCAAATTTTTTAAGAACCCTGATACAAGA
GATTATCTAGACTCTGTTAATTCTATGATTGCAATATCTAATGGTATTTG
GGATGTgatcattttttataaattcaatTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027732-exon-sc0000642-1491911889:85980..86844 | TCONS_00027732-exon-sc0000642-1491911889:85980..86844 | Clytia hemisphaerica | exon |
| TCONS_00027732-exon-sc0000642-1510915933:85980..86844 | TCONS_00027732-exon-sc0000642-1510915933:85980..86844 | Clytia hemisphaerica | exon |
| TCONS_00027732-exon-sc0000642-1575043694:85980..86844 | TCONS_00027732-exon-sc0000642-1575043694:85980..86844 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000642 | supercontig | sc0000642:85980..86844 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR017452 | GPCR_Rhodpsn_7TM |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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