TCONS_00027725 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027725
Unique NameTCONS_00027725
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2442

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027725 ID=TCONS_00027725|Name=TCONS_00027725|organism=Clytia hemisphaerica|type=transcript|length=2442bp
cagcgaaccgaacttttcgaatgGGTTGTGAGCATGGTATTGAAAGTTGA
AACAATTTTATTGAGAACGTTTAATTGAATGGGATCTAATTAATAAACAT
TATGATCATTGCAACCAAATTAAATTAAGAAGAGATCATCAGCAGTACGG
AGGGAGAGTTATtttgttacaagaaaaaatatCTCTGGATACGTATATTA
TGACAACTTTGATGATGAATATGTCAATTGaactgaaaaaatatttctta
ttctTTTGGTGGTCGACCCTTTGTTGTTGTTGGCTACCATTTTTATCATG
CATTCAAGCTCTTTCACAGgAAGGGATGACGATTGAACAAGATTCGTATG
GTGTCGATTTAAATACACTAAAACATTATGAAATCGTATATCCAATTGAA
TTGGAATCAACACAAGCATATACCAAACACTACCAGATATCGGCGTTTGG
ACAAAGCTACGATATATTTATTAAACAAAACGATATTTTAGATAGACGAG
AAGTCAATGGCACTACTCAAGATAATTTGAACAATAATATTTATGTAGAA
tatatagataggaataattcATATCAAGGCAAATATTGGAAGCCAAATAA
CTGCTTTTATAATGGTCCATCAGTGAACGATGAATCTCTTTATTTGGTTC
TGGATTATTGCGATGGTTTGGAAGGAATGATTGAGGATCAGAACACTACA
CTATTTATTGAACCCATCAAAACACAAAACGACACTACTACATCATCCAC
AACCACCACCTCTAACCCATATCGAAAACATTTGGTCTACAGGAGCTCTG
ATGTCAAACATAAATCAAAACTAATCGTAGATCGCACCGAAAAAGAACCC
GCCATTGATTTTCGTCTTCACGCATTATCCTCGAGGCGTCGTCAACGGAG
ATCTGGGTACCAATCATTCTTATACGTTATCAACAGGTCTAACAGAAAAG
TTCAGATATACTATTACGATTTGAAGGATCGGTTAATACCATTCATTTTA
CTGCTACCGAACGAAGGGCGAGGTATCAATACATTTGAAGCCACTAAATG
GGTAGTGAAGGATGATAGAAGTGATCAAATCTTCCATTTGAACGGACGCA
GTGATTACACATCAACTGTCAATAGTCAAGATAAAAGATACGAATTAGTC
ATTACTGTACCTCCGGGTACAGTGTTCAATGACGCGACGAGTGAGACAAA
CGAAGTCGGTGGTGCCGACTACTACATTGAAGTCATGATCCTAGCTGATA
AAAGTATGGTTGACtatcataaaaaaacacacatTGAAAAATATCTCAAC
ACCATGAACCAAATCGTTGCTGGAATATTCAAACATAAAAGTTTGGGCTC
ACGGATACACTACAAagtcactaaaatagttttgctGGAAAGTAATGACA
TTGGTTTTTCAGTTTACAAAGGGAATCCTTCACGAACGCTACGCTCAGCA
TGTGAATATACAACATCGTTAAAACACAGTGATGAAAAACATCCTGATCA
TTTTGATGTCGCAATCGCAATCACAAGGAAACAATTTGGGCCATCTGGAT
ATGCTCAAATGTACAGTATGTGTTCCAATAGAAGAAGTTGTGCCATTGTC
AATGATGAAGGTCTGACGTCATCATTCATCGTGGCCCACGAAGTCGCTCA
TCTGTTAGGTTTAGATCATGATGGTGAAGGGGACTCCAGTCGTTGTAAGG
ATGACCAATCACGTGGTTCAGTCATGGCACCTGTCATTGTATCAAGCTAC
TCGCGTTATCATTGGTCCTCGTGTAGTAGAGAAGTCCTTAAAGTCAACAT
TGGGTATTTCAGTTGTCTTGAGAACAATCCCAATAAACAAAAGGAACAAG
TCTCCAACAAACTACCAGGATCTTCATACACCATCGATGAACAATGTAGA
ATGTCACATCAAGGTTCATCGAAATGCACAACATTTGATTTCAATCCTTG
TCATCGGTTATGGTGTAGTTCAACCGAACGGAAGTGTATATCACGTGGTC
CAGCACTTAGTGGAACTGTCTGTGGGAAAAATAAGttttgcTTCAAAGGA
GAATGTGTTGAAGAAGAAGATAACCAAACTACAAAATTGACCACTAAACG
AATCGTCCATGGACAATGGAGCCGATGGACTTCATGGTCCAGTTGCTCAC
AAAGCTGTGGCGTCGGTCTGCGGTTCCGAAGCCGCGATTGTGATAGTCCA
AGgcCAGGTCCAAGAGGTCGTGATTGTTCAGGTCAAAGGAAAGAGATGGA
TATATGCAGTACACAGCCTTGTCGTTTGATGAAGAGCTATCAAACCATAC
TAGATGAACAATGTTCCAGTATAAGAGACGAAAGATGGATTCGATATAAA
GATCAAGACTTCGAAACCAGATTGAAGGCACCACGTAATAACTTGAATTG
CACTTTTGAAGACGGTATGTGTAATTGGCAGAAAGAAGCGAT
Run BLAST on NCBI

transcript from alignment at sc0000642:145910..154825-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027725 ID=TCONS_00027725|Name=TCONS_00027725|organism=Clytia hemisphaerica|type=transcript|length=8916bp|location=Sequence derived from alignment at sc0000642:145910..154825- (Clytia hemisphaerica)
CAGCGAACCGAACTTTTCGAATGGTGAATTGTAATTTTTTTCGTGCCTTG
GACCGGCGTTCGTTGGTTCAAAATAAGACCCCAGTATTTTATATTTGGAA
ACTTGAACTACTATTTTTTTAGTATACCATATCTATCAGAATCTCTTCGG
TACTGGAACCTCGAGTCGATTGGGAGTATTTGGACAAATTGTTTCGGGAT
CTAGATGTATCTTTTATAAATCCTTGTATTTCTTGTTTTTCATAGGGTTG
TGAGCATGGTATTGAAAGTTGAAACAATTTTATTGAGAACGTTTAATTGA
ATGGGATCTAATTAATAAACATTATGATCATTGCAACCAAATTAAATTAA
GAAGAGATCATCAGCAGTACGGAGGGAGAGTTATTTTGTTACAAGAAAAA
ATATCTCTGGATACGTATATTATGACAACTTTGATGATGAATATGTCAAT
TGAACTGAAAAAATATTTCTTATTCTTTTGGTGGTCGACCCTTTGTTGTT
GTTGGCTACCATTTTTATCATGCATTCAAGCTCTTTCACAGGTAAGAATT
CTCTTAATGCTCGTGCGGCCGCATTAGGTAGGTTTAGGTACGGCTCATGT
GCGGAGCTGTGATAAGGCTACGTAGCTTAAATAACTAGATGAAAGCGATT
TCGATCCACTTTAGAATACATTATCCACTTATTTTGTGGTAATGAGAACT
TGTTTGTGGTTCCACTTCAAGTCAAGAAATCTCCTTACTTAACTCCGTCA
ATTCGCTATTTTCAACTGTTTTTAAATACTCTGACCAGTATTTATTGCTA
GTGACAACCTTATATAGCTCTTGGGTGTCAAAGTTTCAAATATTTGAAAT
ATCTTGGGTAGTTATATCTTTTTTCGTCTCACGCTTAAAATACAGTAGAC
AAGTCTTATTGTCTTTGGAGAAAAAGTTTGATAAACTATGAAGGTTAAGT
ACGTAAATTTTTCATGACAAAAATTTCCCCCATACATTAGTTTCATCTTT
ATATTATATCCTTATTGTTTCAGTCTAAAAGTGCATCAGAAAGGGTTGTC
AATGAAAAACCCAATGTCATTTCTTACCACTTCGGCGAATATAAGTTTCA
CATATTATTTATTTTTCATAGGAAGGGATGANCACTTCGGCGAATATAAA
TTTCACATATTATTTATTTTTCATAGGAAGGGATGACGATTGAACAAGAT
TCGTATGGTAAGAACTTTCTACTCTATTCATCCGCCCTACGCCCTACTGT
TCGATTTGCCGCCCTTCATAACATGGTTGCGGTCCTCCCAAAATCTATTC
ATAATAATAACAAGAAAATTTTCTTTGAGCAGCAAGAGAGCTTTTTCCTA
AAAAACACCGAATCAGCAGTGCTTCATATAAACTGTTACTGTAATTATAT
TCATTCAATCCTTTTTGTACGGAGGAAATTTCCTGCCACCTACAATGTTT
GTCACCTATACGGAAAGGGTTTTAAGACGGAAAGCGGAAATGTTCATTCT
TCGTTGAACAGATAGTTTTTCCTACGTCCTATGTAGGTATACGAACTTAA
CATCCGTTGATTCTATTGCAGGTGTCGATTTAAATACACTAAAACATTAT
GAAATCGTATATCCAATTGAATTGGAATCAACACAAGCATATACCAAACA
CTACCAGGTATGAAACTCCACATTCACTTCACTGGTTTCCATGGTAACTT
GTTTGAAAACGAGGCTCATCACTGGAGAGAGCCATAATTCGTTTGTTATC
CTATTCAACTCTCTAATCGGATAAAATTGGGATGTCTGTTTAAAAAAAAA
AGATAATAGGAAAAGATTACGACGTTTTCAGATCTGTCTGTAATTTCCAC
CCCGGTAATCTGTTAGGTCAATATTATGGTAAAATATGAAAGAAAAAGTT
TTACTTCCAATTTCTGCAAAGACCTAAATATATCTTGTGTGAGGAGTTTC
CACGAGAAAGTTTATTTTTGTTGATCCTCTGTATAGCTTACTAATCCTAA
AATCTCATATTCCCTTATTGTTTGTTTACTTTCTAGATATCGGCGTTTGG
ACAAAGCTACGATATATTTATTAAACAAAACGATATTTTAGATAGACGAG
AAGTCAATGGCACTACTCAAGATAATTTGAACAATAATATTTATGTAGAA
TATATAGATAGGAATAATTCATATCAAGGCAAATATTGGAAGCCAAATAA
CTGCTTTTATAATGGTCCATCAGTGAACGATGAATCTCTTTATTTGGTTC
TGGATTATTGCGATGGTTTGGTAAGAATCTTGTTTGTTTTTCACCCACAC
CAATAATTTCATTGTGGTATCCCTTCATAAACAATAAAACGTGAGAGAAT
CTAAATCCTTCAATCCGGGTTAATCTGAAATCTAATCTAATCTAATGCGA
TTCCCACTACAAAAGAAATCTGTATCTCCTCAAACGCCCACGGGCGGTTT
TCATTTTCTGAAAAATCTTGCCGTCTCTTCTCTGCGAAAAAGAACAAACT
CTTCTTCTTCAGGCTCCAGAGAAGAATCATTTAAATTTTTTTAAGATTTT
CCATCATTTATATTACGTATCCCTTGGAAAAACCCTTCTTCTTGAATTCT
TATTAAAATGAAAATAAAAATCCTATTCATTTATCGTAGGAAGGAATGAT
TGAGGATCAGAACACTACACTATTTATTGAACCCATCAAAACACAAAACG
ACACTACTACATCATCCACAACCACCACCTCTAACCCATATCGAAAACAT
TTGGTCTACAGGAGCTCTGATGTCAAACATAAATCAAAACTAATCGTAGA
TCGCACCGAAAAAGAACCCGCCATTGGTAAGTGTTTGATCTGAGACTAAT
AAACAGGCCCGGCGAAAAAACTGTTAAAGTGGGGAGGCTGAAGGTACAAA
ATGAGATAAAATTCTCATTTGCTCAAAAGTGGGGAGGCTGAAGTCTCCCC
AGGCACCTCGCTTCCACCAGGCCTGATAAAAAACTTTTCTTGTCAGCTGT
CTTATGTTAAAGAAAGTGCAGCTTACATTTTATAATTTGTTATTTGACCT
TGTTTGGTGTATACTTATTATAGTTTATCACCAAATTTTTTTGAAATTTC
GTTTAGATTTTCGTCTTCACGCATTATCCTCGAGGCGTCGTCAACGGAGA
TCTGGGTACCAATCATTCTTATACGTTATCAACAGGTCTAACAGAAAAGT
TCAGGTAAGATATTCATTCAAATGCTGAGAAAAGAAAATTTAGGCACTGA
AGTACCTTAATTTAGACCTAAGAGTCAATGGTTTGTTTACTGAATGACTA
ATTCCCAGTCCACTTTAGTCTTGAGTGTTTGGTCATACGCAAGTACCAAT
ACACTTATACGTTATAGACGATTTGTCATTATTTACGTCTACGAAACAAG
AGATATAGAGTCGCCTTATTTTTCTTCAGTTTGAGAAACACGTGGTCGAA
AGTTTCCTCTGATTTCAAATCAAAGTTTAATGAATCTATCTAGAATAGTT
ACTTTCTGAAACAAAACTAGTCTGTAGGTACGCTTTAAATTATTTTTAAT
TGATTGGGTGGCACTATACGTGGCTGTTAAGTGGATAACTTCTCTGGACT
CAACGTCGTCAAAAATCATCAGAAAGCACCCAGTCATAAGTGTACTCGAC
TCTATAAAACTAAGGCTTGAGGCTGTTTAATTGATTGGGTGACGCTGTTA
AGTATACGATTTCACAGGACTCAGCATCGTCCGAAAGCAAAGCTCAGTCA
GAAGTTGATCCTACTCTCTAAAATTGAGGTTATTTTTTTCTTACAAAATC
CCTTATTTCATTATTTCCTTAGATATACTATTACGATTTGAAGGATCGGT
TAATACCATTCATTTTACTGCTACCGAACGAAGGGCGAGGTATCAATACA
TTTGAAGCCACTAAATGGGTAGTGAAGGATGATAGAAGTGATCAAATCTT
CCATTTGAACGGACGCAGTGATTACACATCAACTGTCAATAGTCAAGATA
AAAGATACGAATTAGTCATTACTGTACCTCGTAAGTTAATCAGTGATATT
TTTTCCTTAAACTATTTTTTGATGAGGAGTTTTTTTTAAAGTGGTACCCG
CACCGAGAGCGCTAGACTTGGACGTTTGGACACAAGTTATGTAACGACGT
TTGTCGTTATGCAAAGTTTTAACACTACAATGGCTTCCTTGCGGGTAACA
CTCCAATCAAATACGTCGGATATAGCTTGGTCCAGGGTTTATAAAGGTCA
GTGATTGGGACAACCATTCTTTATATCCCCTTTCTCTTTTTCCAGCGGGT
ACAGTGTTCAATGACGCGACGAGTGAGACAAACGAAGTCGGTGGTGCCGA
CTACTACATTGAAGTCATGATCCTAGCTGATAAAAGTATGGTTGACTATC
ATAAAAAAACACACATTGAAAAATATCTCAACACCATGAACCAAATCGTA
AGATTATAGTATTTCTTACTCAGGTTAAATGACACCTTTCTTACCTTTCA
CAAATCAATCCCTTGGTTTAATTAATCACGCGATGAAGCGACCGTAGTGC
AGTGGTAGAGCATCCGGTTACGGAGCGCAAGGTTGTGCTTTCAATCCTCG
GCCGGGTCATGTCAAAGACTTCGTACTTAGCACCAGTGGCGTGGTGGGAA
AATTTCTCTGGGGTGGCCAAGGCAAATATGGCGCCCTTTTTAAAGATTTT
GTGTTTTTGGCGCCCCTCTCTATACACTCATTATGAATACAAAAAAGGGA
GTGTGCGAGCGAAGCGAGCCAGAAAATTTGGAGTTTTTGAGGTGATGAGG
GGCGCCATTTTTGTTTTTTCATTTGTCAATCTTTCGATATGGGCGCCTGA
AAAATCCTTCTTGGCGTCCCTTATTTTTTGGCGCCCCTTCTCAAAAGGAC
TCGGCTGGGGGGGCCTGGCCCCCCTGGCCCCCCCTGCCACCACGCCACTG
CTTAGCACACAAACGTTACTTGATGCCTCTCAGCTTGATGCTCAGCAATT
AAGAGAAGGATCAAGGGTAAGTGGAACAATCCAGAAAGAAAGAGGAGCCT
TCGGTTCGCCTCCGACTGTGGTCACAGACTTACTTAATCACATATTATTA
ATTCTTTTTAACTTTAATCATAGGTTGCTGGAATATTCAAACATAAAAGT
TTGGGCTCACGGATACACTACAAAGTCACTAAAATAGTTTTGCTGGAAAG
TAATGACGTAAGCAAAGATGACTTTTTTCCTCAATAAAAATCCCTCTAAA
CTATAGCATCGTATGTACGCTGATTTTAAGTTTAAGACAGTTTTAAAAGT
AATTTAGATGTACCTCTGGCGATATCACTTAGTGCCTAGCGGGGGGAAGG
GACTATTTTTTTGTCAGAAGTGTGTCGTATGTAACCCATGTCATAAGGAA
AAAAATTTAGATTATACTAACTTGCTGTTTTTTGCACTTTTTTTTTAGAT
TGGTTTTTCAGTTTACAAAGGGAATCCTTCACGAACGCTACGCTCAGCAT
GTGAATATACAACATCGTTAAAACACAGTGATGAAAAACATCCTGATCAT
TTTGATGTCGCAATCGCAATCACAAGGTAAATTCTAACCAGTAAATAAAA
CTAACCAATGATTGAATCCTCAATTCATTTTTTGTGACATTATAAATCGC
GGCGTGATATTAAGTACTCTGTACCAGAGTGTATCTCACGTTTATGGCTT
CGTAGTACACTCTGTGCGCATTGTCTGTTTGATAAAAAAATTTGTAAATA
GCAACACTTCTCTCGTCGTCTCCCCTGTTTCACCAACACTCCATCGCAGC
GGTCGGTTTGAAAAATCTCAAATGAGAAAAGACAGTGACAACAGACCCTC
TTCGGCAATGAATTTTGTAATTAGCCGTAGATACTGGGTCTGTATACAGA
CAAGATATTAAGAAGCTGGCATCGCCAGATGCTCTTATCGCTCTTTGGCA
CTCTTTCTTATAATCTCGAGTGGTATTTCCTAAACCTTTATTAAACTTTT
CTGTTTTTGTTAAAAATTCAATAGAAATCAACCATTTTCATCATAGGAAA
CAATTTGGGCCATCTGGATATGCTCAAATGTACAGTATGTGTTCCAATAG
AAGAAGTTGTGCCATTGTCAATGATGAAGGTCTGACGTCATCATTCATCG
TGGCCCACGAAGTCGCTCATCTGTGAGTAGTATTATTATATCTTTTTTTT
TTTTTAATCTCGACTTCTGTTTTTTTGGGAAAATTATACAGTCAAATCTC
TCTATTTCGAACTTCTATAATTCGATTCCTTCTGTAATTCGAACTAAAAC
ATTGGTCCCCTCAGCTGTAATTTAGTGTTAAATTCTCTCTGTAATTCGAA
TTTTTCTTAAATTTTTCTCGAATTAGAGAGAGTTAACTGTATGATAAACT
TTCATAAATCAACAGAGATATTTAAGAATTACTCAGTTGATGTTTTTTTG
CGAAGGGTCATCAAGTGTAGTGTGATTAACATTTCACTAGGTTAGGTTTA
GATCATGATGGTGAAGGGGACTCCAGTCGTTGTAAGGATGACCAATCACG
TGGTTCAGTCATGGCACCTGTCATTGTATCAAGCTACTCGCGTTATCATT
GGTCCTCGTGTAGTAGAGAAGTCCTTAAAGTCAACATTGGGTAAGAAACT
TTCTATGATTTGTCAAATCTCTCATTGAACTTCCCTATTATGTAACAAAG
CAAAGAAATACTATTCTCAGTATTCACTGAGAAACAATAACGTTTAAAGT
CTTTAAATGTGATACACTTTTTTAATATAAAAGAACAAACTATATGAGAA
CATAAGGCTTCGATGGCCGAATTACTAAGAACAAGTTAGGAACACTTTAA
GGCTTTGCAGAGTCTAAAACACCCATTTTCTTAGGAAAACGGTCAAAAAT
GTTCACAAAATGGTGAAAATAAGAACATGCTAAGAACATTTTTAGGCTTC
AAACTCGAAAAATTAAGAACATACGAAGGCTGCAAAAAATTAGGATGCTC
TTATAAAAAACGTGATATATCTCTGTGAGTTTTCTTATGCATTTTCACAT
TCCCTTCTCCAGGTATTTCAGTTGTCTTGAGAACAATCCCAATAAACAAA
AGGAACAAGTCTCCAACAAACTACCAGGATCTTCATACACCATCGATGAA
CAATGTAGAATGTCACATCAAGGTTCATCGAAATGCACAACAGTAAGTTG
TCTATTTCTTCATTCCATCTTAACAGGTATTTTGTAAAGAATTCGAATGG
CTATCTTGCAATATATACCTTCCATTCTCTCATAAGTGTCGGACTTTTTA
TTTATATGTCGGACTCAAATGTCGAATAGTTTTAATACGGCATTCTGGTG
CACGACGTGACATGGTGTTCGCTCGAATTGAAAGTCTAATTTTTCTGGAA
TACAGAGAGATTCGAATTACAGAAAATTTTTAATAAGGAATATCATTAGC
GGGACTTAAAATTAATTGAACTATCGCTCAAAGATATCAATATTTTAAGT
TTGTTTTTAGTTTGTACTTATATATCTTTACTTTTAAGTAAGATTTTCCG
CCTACATCCATGATACTGACTATTTACTTTCTTTATTTCATTCAAGTTTG
ATTTCAATCCTTGTCATCGGTTATGGTGTAGTTCAACCGAACGGAAGTGT
ATATCACGTGGTCCAGCACTTAGTGGAACTGTCTGTGGGAAAAATAAGGT
AATTCAGTAAATAAAAGTCTTTTACTGGTCTTGCTTTTATTTTCACCCCT
GTTTCACAGCCCCGATGGAACTTTTTTCTTCAATTGGGATAAAATTACTA
TTGCAATCCCAATTGGGATACTTTTCCAAGGTTAAAAAAATCCAGTGGGG
TTGGTTTCGGAGTGAAATTTTTAAGCATTAAATTTCGAATAGGGATGCAA
TCAAAAATTATTTCACATTGGGCTGGGGTCCCAGCGGGTCTGTGACACCG
GGGTGTTGTAATAATGAAGATTGTAAGAATCTGACAATGAGTCAACATTG
AGTGTGTTGACTTTATTGAAAATGTTTTTTTCTTCGGCATTGAACCAATC
AAAATTAATGCTTTCTTTTTTCTTCAGTTTTGCTTCAAAGGAGAATGTGT
TGAAGAAGAAGATAACCAAACTACAAAATTGACCACTAAACGAATCGTCC
ATGGACAATGGAGCCGATGGACTTCATGGTCCAGTTGCTCACAAAGCTGT
GGCGTCGGTCTGCGGTTCCGAAGCCGCGATTGTGATAGTCCAAGGTAATT
ATGGTTCATTTTTCGTTTTTTTAATACTCTGTAAAATTCTGTTCTGCGAA
ATACCAATCAGAGACAGGCGGTCAAACCGAAATTTTGCAAATCATACATC
TCCAAATATCCATATCAACATGGTCAAAATTTCAAGTTCATAGCACTTGT
CAATTTTGAGATTTTAAGAGGGGGCCTTATACTCGAAGGGTTAAGGTTTA
CACTTATTTCTTCAAATTTTTCTTACGCTTACTTTTTTTTTCGTTTTAGG
CCAGGTCCAAGAGGTCGTGATTGTTCAGGTCAAAGGAAAGAGATGGATAT
ATGCAGTACACAGCCTTGTCGTTTGATGAAGAGCTATCAAACCATACTAG
ATGAACAATGTTCCAGTATAAGAGACGAAAGATGGATTCGATATAAAGAT
CAAGACTTCGAAACCAGATGTATGTTGAATTAAATCTTTATCAAAGGGCA
GTCCGTTTATCAAGACAATTTCCATTGAGATTTAGACTTGAGTGTTAGCA
TTCCATTGCTACATATTAGCTAAACACACATACATACAGCATTGACTAAA
AAAGAGTATTCATTCTTAACATTAAAATTTTACTTTTAATTCACAGTGAA
GGCACCACGTAATAACTTGAATTGCACTTTTGAAGACGGTATGTGTAATT
GGCAGAAAGAAGCGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015648XLOC_015648Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027725-exon-sc0000642-1575043694:154803..154825TCONS_00027725-exon-sc0000642-1575043694:154803..154825Clytia hemisphaericaexon
TCONS_00027725-exon-sc0000642-1575043694:154285..154580TCONS_00027725-exon-sc0000642-1575043694:154285..154580Clytia hemisphaericaexon
TCONS_00027725-exon-sc0000642-1575043694:153619..153649TCONS_00027725-exon-sc0000642-1575043694:153619..153649Clytia hemisphaericaexon
TCONS_00027725-exon-sc0000642-1575043694:153169..153254TCONS_00027725-exon-sc0000642-1575043694:153169..153254Clytia hemisphaericaexon
TCONS_00027725-exon-sc0000642-1575043694:152556..152789TCONS_00027725-exon-sc0000642-1575043694:152556..152789Clytia hemisphaericaexon
TCONS_00027725-exon-sc0000642-1575043694:152000..152186TCONS_00027725-exon-sc0000642-1575043694:152000..152186Clytia hemisphaericaexon
TCONS_00027725-exon-sc0000642-1575043694:151622..151719TCONS_00027725-exon-sc0000642-1575043694:151622..151719Clytia hemisphaericaexon
TCONS_00027725-exon-sc0000642-1575043694:150796..151003TCONS_00027725-exon-sc0000642-1575043694:150796..151003Clytia hemisphaericaexon
TCONS_00027725-exon-sc0000642-1575043694:150379..150530TCONS_00027725-exon-sc0000642-1575043694:150379..150530Clytia hemisphaericaexon
TCONS_00027725-exon-sc0000642-1575043694:149619..149702TCONS_00027725-exon-sc0000642-1575043694:149619..149702Clytia hemisphaericaexon
TCONS_00027725-exon-sc0000642-1575043694:149250..149377TCONS_00027725-exon-sc0000642-1575043694:149250..149377Clytia hemisphaericaexon
TCONS_00027725-exon-sc0000642-1575043694:148654..148779TCONS_00027725-exon-sc0000642-1575043694:148654..148779Clytia hemisphaericaexon
TCONS_00027725-exon-sc0000642-1575043694:148186..148335TCONS_00027725-exon-sc0000642-1575043694:148186..148335Clytia hemisphaericaexon
TCONS_00027725-exon-sc0000642-1575043694:147634..147763TCONS_00027725-exon-sc0000642-1575043694:147634..147763Clytia hemisphaericaexon
TCONS_00027725-exon-sc0000642-1575043694:147128..147229TCONS_00027725-exon-sc0000642-1575043694:147128..147229Clytia hemisphaericaexon
TCONS_00027725-exon-sc0000642-1575043694:146582..146748TCONS_00027725-exon-sc0000642-1575043694:146582..146748Clytia hemisphaericaexon
TCONS_00027725-exon-sc0000642-1575043694:146157..146326TCONS_00027725-exon-sc0000642-1575043694:146157..146326Clytia hemisphaericaexon
TCONS_00027725-exon-sc0000642-1575043694:145910..145979TCONS_00027725-exon-sc0000642-1575043694:145910..145979Clytia hemisphaericaexon
TCONS_00027725-exon-sc0000642-1510915933:154803..154825TCONS_00027725-exon-sc0000642-1510915933:154803..154825Clytia hemisphaericaexon
TCONS_00027725-exon-sc0000642-1510915933:154285..154580TCONS_00027725-exon-sc0000642-1510915933:154285..154580Clytia hemisphaericaexon
TCONS_00027725-exon-sc0000642-1510915933:153619..153649TCONS_00027725-exon-sc0000642-1510915933:153619..153649Clytia hemisphaericaexon
TCONS_00027725-exon-sc0000642-1510915933:153169..153254TCONS_00027725-exon-sc0000642-1510915933:153169..153254Clytia hemisphaericaexon
TCONS_00027725-exon-sc0000642-1510915933:152556..152789TCONS_00027725-exon-sc0000642-1510915933:152556..152789Clytia hemisphaericaexon
TCONS_00027725-exon-sc0000642-1510915933:152000..152186TCONS_00027725-exon-sc0000642-1510915933:152000..152186Clytia hemisphaericaexon
TCONS_00027725-exon-sc0000642-1510915933:151622..151719TCONS_00027725-exon-sc0000642-1510915933:151622..151719Clytia hemisphaericaexon
TCONS_00027725-exon-sc0000642-1510915933:150796..151003TCONS_00027725-exon-sc0000642-1510915933:150796..151003Clytia hemisphaericaexon
TCONS_00027725-exon-sc0000642-1510915933:150379..150530TCONS_00027725-exon-sc0000642-1510915933:150379..150530Clytia hemisphaericaexon
TCONS_00027725-exon-sc0000642-1510915933:149619..149702TCONS_00027725-exon-sc0000642-1510915933:149619..149702Clytia hemisphaericaexon
TCONS_00027725-exon-sc0000642-1510915933:149250..149377TCONS_00027725-exon-sc0000642-1510915933:149250..149377Clytia hemisphaericaexon
TCONS_00027725-exon-sc0000642-1510915933:148654..148779TCONS_00027725-exon-sc0000642-1510915933:148654..148779Clytia hemisphaericaexon
TCONS_00027725-exon-sc0000642-1510915933:148186..148335TCONS_00027725-exon-sc0000642-1510915933:148186..148335Clytia hemisphaericaexon
TCONS_00027725-exon-sc0000642-1510915933:147634..147763TCONS_00027725-exon-sc0000642-1510915933:147634..147763Clytia hemisphaericaexon
TCONS_00027725-exon-sc0000642-1510915933:147128..147229TCONS_00027725-exon-sc0000642-1510915933:147128..147229Clytia hemisphaericaexon
TCONS_00027725-exon-sc0000642-1510915933:146582..146748TCONS_00027725-exon-sc0000642-1510915933:146582..146748Clytia hemisphaericaexon
TCONS_00027725-exon-sc0000642-1510915933:146157..146326TCONS_00027725-exon-sc0000642-1510915933:146157..146326Clytia hemisphaericaexon
TCONS_00027725-exon-sc0000642-1510915933:145910..145979TCONS_00027725-exon-sc0000642-1510915933:145910..145979Clytia hemisphaericaexon
TCONS_00027725-exon-sc0000642-1491911889:154803..154825TCONS_00027725-exon-sc0000642-1491911889:154803..154825Clytia hemisphaericaexon
TCONS_00027725-exon-sc0000642-1491911889:154285..154580TCONS_00027725-exon-sc0000642-1491911889:154285..154580Clytia hemisphaericaexon
TCONS_00027725-exon-sc0000642-1491911889:153619..153649TCONS_00027725-exon-sc0000642-1491911889:153619..153649Clytia hemisphaericaexon
TCONS_00027725-exon-sc0000642-1491911889:153169..153254TCONS_00027725-exon-sc0000642-1491911889:153169..153254Clytia hemisphaericaexon
TCONS_00027725-exon-sc0000642-1491911889:152556..152789TCONS_00027725-exon-sc0000642-1491911889:152556..152789Clytia hemisphaericaexon
TCONS_00027725-exon-sc0000642-1491911889:152000..152186TCONS_00027725-exon-sc0000642-1491911889:152000..152186Clytia hemisphaericaexon
TCONS_00027725-exon-sc0000642-1491911889:151622..151719TCONS_00027725-exon-sc0000642-1491911889:151622..151719Clytia hemisphaericaexon
TCONS_00027725-exon-sc0000642-1491911889:150796..151003TCONS_00027725-exon-sc0000642-1491911889:150796..151003Clytia hemisphaericaexon
TCONS_00027725-exon-sc0000642-1491911889:150379..150530TCONS_00027725-exon-sc0000642-1491911889:150379..150530Clytia hemisphaericaexon
TCONS_00027725-exon-sc0000642-1491911889:149619..149702TCONS_00027725-exon-sc0000642-1491911889:149619..149702Clytia hemisphaericaexon
TCONS_00027725-exon-sc0000642-1491911889:149250..149377TCONS_00027725-exon-sc0000642-1491911889:149250..149377Clytia hemisphaericaexon
TCONS_00027725-exon-sc0000642-1491911889:148654..148779TCONS_00027725-exon-sc0000642-1491911889:148654..148779Clytia hemisphaericaexon
TCONS_00027725-exon-sc0000642-1491911889:148186..148335TCONS_00027725-exon-sc0000642-1491911889:148186..148335Clytia hemisphaericaexon
TCONS_00027725-exon-sc0000642-1491911889:147634..147763TCONS_00027725-exon-sc0000642-1491911889:147634..147763Clytia hemisphaericaexon
TCONS_00027725-exon-sc0000642-1491911889:147128..147229TCONS_00027725-exon-sc0000642-1491911889:147128..147229Clytia hemisphaericaexon
TCONS_00027725-exon-sc0000642-1491911889:146582..146748TCONS_00027725-exon-sc0000642-1491911889:146582..146748Clytia hemisphaericaexon
TCONS_00027725-exon-sc0000642-1491911889:146157..146326TCONS_00027725-exon-sc0000642-1491911889:146157..146326Clytia hemisphaericaexon
TCONS_00027725-exon-sc0000642-1491911889:145910..145979TCONS_00027725-exon-sc0000642-1491911889:145910..145979Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000642supercontigsc0000642:145910..154825 -
Expression
No biomaterial libraries express this feature.
Blast
[Close]
BLAST of TCONS_00027725 vs. Swiss-Prot (Human)
Match: ATS3 (A disintegrin and metalloproteinase with thrombospondin motifs 3 OS=Homo sapiens GN=ADAMTS3 PE=2 SV=4)

HSP 1 Score: 244.202 bits (622), Expect = 1.732e-67
Identity = 156/425 (36.71%), Postives = 240/425 (56.47%), Query Frame = 2 
Query: 1166 GTVFNDATSETNE-------VGGADYYIEVMILADKSMVDYHKKTHIEKYLNTMNQIVAGIFKHKSLGSRIHYKVTKIVLLESNDIGFSVYKGNPSRTLRSACEYTTSLKHSDEKHPDHFDVAIAITRKQFGPSG---YAQMYSMCSNRRSCAIVNDEGLTSSFIVAHEVAHLLGLDHDGEGDSSRCKDDQSRGSVMAPVIVXXXXXXXXXXXXXEVLKVNIGYFSCLENNPNKQKEQVSNKLPGSSYTIDEQCRMSHQ-GSSKCTTF-DFNPCHRLWCSSTERKCI---SRGPALSGTVCGKNKFCFKGECVEEEDNQTTKLTTKRIVHGXXXXXXXXXXXXXXXGVGLRFRSRDCDSPRPGPRGRDCSGQRKEMDICSTQPCRLMKSYQTILDEQCSSIRD--------ERWIRYKDQDFETR 2371
            GTV+ +   + NE        G  DY IEV++  D S+V +H K H++ YL T+  IV  I+  +SLG  I+  + ++++L        + +GNPSR+L + C + +  + SD  H +H D AI +TR+ FGP+G   YA +  MC   RSC + +++G +S+F+VAHE  H+LG++HDG+G+  RC D+ + GSVMAP++ +++ RYHWS CS + LK  I  + CL ++P         +LPG +Y++DEQCR     G   CT F  F+PC +LWCS  +        +GP L GT C   K+C+KG C+ +  NQ  +        G W  WT + SCS++CG G+RFR+R C++P P   G+DC G   E  +C+T+ C+  K ++    +QC               W+ Y+  D + R
Sbjct:  231 GTVYGNIHQQLNETMRRRRHAGENDYNIEVLLGVDDSVVRFHGKEHVQNYLLTLMNIVNEIYHDESLGVHINVVLVRMIMLGYAKSISLIERGNPSRSLENVCRWASQQQRSDLNHSEHHDHAIFLTRQDFGPAGMQGYAPVTGMCHPVRSCTLNHEDGFSSAFVVAHETGHVLGMEHDGQGN--RCGDETAMGSVMAPLVQAAFHRYHWSRCSGQELKRYIHSYDCLLDDPFDHDWPKLPELPGINYSMDEQCRFDFGVGYKMCTAFRTFDPCKQLWCSHPDNPYFCKTKKGPPLDGTECAAGKWCYKGHCMWKNANQQKQ-------DGNWGSWTKFGSCSRTCGTGVRFRTRQCNNPMPINGGQDCPGVNFEYQLCNTEECQ--KHFEDFRAQQCQQRNSHFEYQNTKHHWLPYEHPDPKKR 644
The following BLAST results are available for this feature:
BLAST of TCONS_00027725 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ATS31.732e-6736.71A disintegrin and metalloproteinase with thrombosp... [more]
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