TCONS_00027701 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00027701
Unique Name	TCONS_00027701
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1192

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000642:9728..15944+

transcript sequence

>TCONS_00027701 ID=TCONS_00027701|Name=TCONS_00027701|organism=Clytia hemisphaerica|type=transcript|length=1192bp
AGCTGTTTCTCGTAGAACAAAAGGAGCTCCAAGACATAACAGGAGAGGGC
AGaaTGTGCTTCCACGTTCGGAATCATTGAACCTTGACGTAACGGATTGG
TCTGACGTCTTTGAAGCCGCACAATCTTACAATCCTGGGGTTGTACCTCT
ACCACTACGAATGGGTAGACCTCGAACCAATAAAGTTGGCGATGTTCCAC
CCCATGACAAAGGGAATATCGAGCTGCTCAAGATCCCCAACTTCTTCCAC
TTGACGCCACCTGCTATCAAGAAGCATTGTGAAGCTTTAACAGaatattg
ttcaCCCTGGCCAGAGGATATTGGTCACCGTCCCATTCGCATCACCACCA
TCAATCATATTTATGCCGGCCCCTCTATCCGCCATCCCGACTCTAACAAA
GTCAAGCTACAGGTTTACTTGAAAGACTTGGAACTCGATGACCATGCTCG
AACGAAATTGATTCGTTTAGTTGGACACCGTTATAACCGTGCGAATGACG
AGCTGACGATCATTACGAAGAGTTGTCCGACAcgaaagcaaaataaagat
tatGCTTATTATTTATTGACTGCGCTATACCATGAAGCTTGGaaaACGGA
AGACTGGGAAATCGAGGCTGAAGGAAAAACAGACGAAGAGATTCAGCAAG
AAATCGACGAAGTCAATGCTGAACTCAACCCTAAACTTTACAATGAAATG
GAACGTAGACGGCGTTCTTTTTACAGAATCATCAATGATAAAGTCATACG
GTACAATAAGAACGGTCATCCGTTTGTTTATGAAATCCGGAAACACGGTA
TCAGCGGAACTCTCACGGATGAAGAGAAACGGTTAGCCAAAGAAGAATGG
GAGAAAATACAAAGAGAGCTTCCTGACATGAGCACTTTTGATCTTCCTTA
CAGAAGAAGTAGTGGCTCAGAATTCGATAATTAGATTTGATATTTATATT
ACATGGAAAGGATCTTCCTTAACCTCTCACCACCAAAGAGGCTACCATCA
GAAAAGTAGTCAATTTTCgttaaattgaatttttagaAGAACATTTTGAA
TCCACTATTCGCTATTCAGTTTTGTAGCTagctagtttttttttcaaatg
aaatgtaCCCTGTAAATAGATATATTTTTGTACATATAGCAGTCATTATT
CAAGATCTTTTGATAAGGATTTAATCTAAAGATAAATAAGAC

Run BLAST on NCBI

transcript from alignment at sc0000642:9728..15944+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00027701 ID=TCONS_00027701|Name=TCONS_00027701|organism=Clytia hemisphaerica|type=transcript|length=6217bp|location=Sequence derived from alignment at sc0000642:9728..15944+ (Clytia hemisphaerica)
AGCTGTTTCTCGTAGAACAAAAGGAGCTCCAAGACATAACAGGAGAGGGC
AGGTattgtttctttctttaaacTATACTCAAACTAAactaaagttttaa
aattgaatccTGTTAAAAAGTGTTgtactttttcgttttttattttgtta
gaaTGTGCTTCCACGTTCGGAATCATTGAACCTTGACGTAACGGATTGGT
CTGACGTCTTTGAAGCCGCACAATCTTACAATCCTGGGGTTGTACCTCTA
CCACTACGAATGGGTAGACCTCGAACCAATAAAGTTGGCGATGTTCCACC
CCATGACAAAGGGAATATCGAGCTGCTCAAGGTAATTAGCAGCTTTATCC
AAACAGGGTTGTTTTTAATAGAGACATATTCCAAATGCATTACATCTACA
CCATCAAGCTTTATTTTGAAACGAAATTTTTTTAAGCCAGAATTTGGATT
CAATATTGCAATTGACGATGATTGGTTTTCTCTATCCTATATTTGTTATT
TCATTAGATCCCCAACTTCTTCCACTTGACGCCACCTGCTATCAAGAAGC
ATTGTGAAGCTTTAACAGGTTTGATCCTCGTCTTCCttctaatttcaatt
tcaaaatttcttctcatGCTTCACTTACATTACAGATAGATACTTAACTT
CAGTCGAGCTAGAATCTCACAATACTTGTGTTGCCAGGTCCTGGAGGGgg
ggggttacttaggcaaaaatgggtgctgggtatgtgcgtgccttaagggt
cggttttttcaccttccaaaatctctctaagggtcgaaaaaTTCACGGCT
TTTaggaaatgtttttgatttcaagagaaaaaattataaaaaagtctcta
taagggtcaccttttcagcaaaaatcagacTAAGGGTCAGGGTTTGGAGG
TCCGGCATGCACATACCCAGCATCCCTCAACCAGGCCTAGGTTAGTTGTC
TGTCCGTCACAAAACCTAAAGGCCACCTGAAAGCTTCATAATGGTCAGAT
ATGGTTGGGTTTTGCGCACTTGGTTTTAAAACTgggtgttttttcattgt
tCAAACATTTTGGTTAACCCAGTTTGCACGAAACATCAATGTTTTCATga
tctttagaatattgttcaCCCTGGCCAGAGGATATTGGTCACCGTCCCAT
TCGCATCACCACCATCAATCATATTTATGCCGGCCCCTCTATCCGCCATC
CCGACTCTAACAAAGTCAAGCTACAGgtatttaaaacaattttaatcACC
CAGTAAATAACCTTTGCTAAAGCTTATCGCCGCATCAATTCAAGACAGGC
GAAAAAAAACCTAAAACCAACCCCCCTTATTTCAGCATACACGCTTACAA
AAAATGGCCTCAACTCCTATGAGAAAGTGGCGTTTCTTgcgattaaaaaa
aataaggggTTTTAAATCTTCCTTAACATAACATAATACCATTAACAGCC
TTAAGTCCTGAATTTAGGGAAATGgaaatttcttttaaagatttcttGGA
AAGCATTATGTGCCAATTTTATTCTCTCGTGAAATGTTTAACTAAATTGT
GAGTTTAAAGCTCGATTCTAGCTTGAGACTTGCTTAGTATGAAGATTTTC
AGTCCAATTCAATACAGCCCTTAGTCTAATAAGTGCCATTTTAGAGCAAA
AAGATATTCCCAATACCCCATAAAGGCTAGGGCAAACCGATCCaatattt
catccaacatgccttttttctgatgctggatgaaatgttggaccggtGTC
ACAGTAAAATATTACTCCCCAAAATTTATACTCTCCAGTCATTATTTACT
GGGAAATAATTACTCCCCGGTAATTTTTTCCCAGGAAATTATTACTTCCG
GGAGTATAAATTTACGCGAAAATAATGACTCCCTTCGGGAAATTTTTACT
CCCCTGATAGTATACCAAAAAACTGGCATAGNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNTGTTTATCATgaataaataacaaaaacaatatgGAAACTTTTACTg
ttattttgacatttaaattgaatttaaacttttttcttgagtgCGATTTG
CttgggttggaaaattttaaaaacctggcTACATCTTGACACTGCAAcac
tgttttctttattttgaaataattcttgaaatttaattaaaacaatTCTT
TTTCGTAGAGCACAgtaaaaattctaataaaaaggCATCTTTCTTGATTT
CGAACCCCCCCTGTCTAttatattttacagaaatttcGGACCCTCTCCCC
CTTTTATATTTGGATCCCTCTATTATTCCGGTCCTTAGAATAGAATATTT
CAACaggaaaatgaagataaaaaaaatcgcTACAGTGGGGCTAGCATTCT
TTGATTTTTCCCCGAACGGTTGAAAATGTTCTTGGCGTCACCAGGGGTAC
AGTTCAACGGGATGGGTGGGGGTAACAACGGGTCACTTTAACTTGTAGAT
GATTTTATGGCTAGGTTCTTTTACAGCAACCACAACTATAAAGATTATGG
ATTACAGTATGCATACATTTTTAAAACGTCTCTACTTAGCAAGTGACTTC
ATTGATTGGAAGGTCTAAATCGAATGTTTAATTCGAATATGCAAAAGTCG
GAGGTCACCAGGGAGTCATAATTTACTGGGAAAATAACACTCcccctagt
ctgaatcgcagacctctacaaaaccctaggtagtataggtctgcttaatg
atctaccaaccgctttccggttcggtttttttaaattcgatgtattttac
agaatcttgGCGAGGTAATAacttgattgacattgatgtgcgcgcaaAAT
CGATCATTTCGAATGTTCTCAATagaatgtttacattcgaaattcgaatc
ccagaccagaaaaacaaaacagaaagaaagataaaaaacaatctgatgcg
cgcattttttacagtctgtaaatttatttttgacttttgcttttataaga
tatctggtctgtaaatttatcaaaacttttccttcGGCTCTTCGGTCGAa
actcaaaaatacaaatatgaacaaaaaagtgaaagaaaacaaccaaaaag
actccaatcttttcaaaagaattgaagctaaagTACATGAAAAAGATACA
CACAAAGGCCACACACACACAATATCGAAaggtgaaatgccaaagctgaa
gaaaggttttgtttgttttaacatttaacaagGGAATAAcaaacaacact
cccttttgtagaatcataaagaagtaatgtcagaaatattcaatatagcc
cccaaaatgtactgtatatacataactaaaataccttgaaataatctgca
acatatctgtagaactgacgaAACAATTATATGGAGctaaagtgatcaac
gaatccagtgtggtaaaaaattgtacactcatacaagtccaaattcaaac
gtcaaaatgtagttttatgaagcaaaattttgttggtgcacacagaagat
acatcagggcagttgaattcaataaatctattttctaatcttttacaaaa
tctccacattaaacaagaaaggaggaggAAAAAggagcaaacttccttcc
gcctacttttttttgaaatccaaatatattttccaatctatgatttggtg
cctcacagaaaatttaaacattacgtaatgttatatttgtagacactcgc
cagctaaaaatgtctttagccgtatatcggctaaaggcggcaaatctctt
agactggagtcgtttataatgcatgtaatactaataataaacacaaataa
tgatatacgggatttagtttgtataaacgactggaagaatccggtgttcc
agccttatagataccgggcctagctacgcagaaacttgcgtagcgaaaag
acaatttatcaagcaacaacaaactcttaaaataaaatcaactcaaatga
aacatttttaacacacaaatccacacacattttattttcaagaacttttt
ttgagcgggaaaaaattttaattgcgatattgacactttttttttgtttg
gagttagtgcacNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNtttggagttagtgcacaaaggtttctagacgactaaaatttacttt
tttgctttatttctaatatgtctgaattagtcgtctagcttgctagacta
caaatctctggacaaaggaaatatcgcttattaagcatcctctataagga
gcgcgaatccgttagtggatgccagcagtcTACACTCCCCCCTAATTAGA
GAAAATAAATTTGCAATTTGAAGGGGAGTAATTTTTTCCACGGGGGAGTA
ATAATTTCTCAGGTAATTATTACTCCGGGGGTCattttttcccgggaaat
tATAACTGAGGGAGTGATTTTCCGGGGAGTAAAGATTTACGGTTATACCG
GTTTgcgtcaattcaaatttttgggaaaaaatgaaaattcaaaaaaagaa
gaaaaaaccgtGTTGGACGGTGTTAGATGAAGTTTGAttgccatcaaaca
tttcatccaacatttgcggcgagatcaaagaagctctctcattgaattgt
gtaatttttcgtgttggattggtttggtggtactttattctttattttta
aaattttcctttttttccaagtcatgttggatgaaatgtttgatcgGTTT
GCCCCGGCCTTGATTTTCGCTTCATCCAATGCAAATttttccatcaaaca
tttcatccaacattggaaaatcagTCGATCTTCtcaaaacgaaaaaaatt
gactttaggCTGTCTTGAATCGATACGGCCTAACGCTGTTTTGGTTTCTG
AAGCTCTTGCTCTAGCTACGGGATTACACTGTtaggaaattattttttaa
aagatcatCTCGTTTCATAGGTTTACTTGAAAGACTTGGAACTCGATGAC
CATGCTCGAACGAAATTGATTCGTTTAGTTGGACACCGTTATAACCGTGC
GAATGACGAGCTGACGATCATTACGAAGAGGTATATCAATGAGTTAAAAT
GTTGATTCATTTTCTTGTAATTCTTCCTCTTGATGGGCTAGGTACAAGAC
ACAGAACAAGTCAATATGATTTCTAATCTCTTAAATCGTTTTCTCTTTAG
TTGTCCGACAcgaaagcaaaataaagattatGCTTATTATTTATTGACTG
CGCTATACCATGAAGCTTGGGTAAGAAGTTTGTCTACGAAACCgcttttc
atttcttctttccttctttttttttgacatttggaCAAACTATATAATTT
TAGATCAATGTGTAGAAGTGCTATGTTAGTCTTTTCGATCATTGAAAAAG
GAAATGTGAAAGATACTTTGAATTCGTACACAATTAGAAGGATTGAGATG
AAAGGGTTGTACTTCAATCCGTACTTACATGACAAATTAGCTTGAATcaa
cttttgttttgttttagaaaACGGAAGACTGGGAAATCGAGGCTGAAGGA
AAAACAGACGAAGAGATTCAGCAAGAAATCGACGAAGTCAATGCTGAACT
CAACCCTAAACTTTACAATGAAATGGAACGTAGACGGCGTTCTTTTTACA
GAATCATCAATGATAAAGTCATACGGTACAATAAGAACGGTCATCCGTTT
GTTTATGAAATCCGGAAACACGGTATCAGCGGAACTCTCACGGATGAAGA
GAAACGGTTAGCCAAAGAAGAATGGGAGAAAATACAAAGAGAGCTTCCTG
ACATGAGCACTTTTGATCTTCCTTACAGAAGAAGTAGTGGCTCAGAATTC
GATAATTAGATTTGATATTTATATTACATGGAAAGGATCTTCCTTAACCT
CTCACCACCAAAGAGGCTACCATCAGAAAAGTAGTCAATTTTCgttaaat
tgaatttttagaAGAACATTTTGAATCCACTATTCGCTATTCAGTTTTGT
AGCTagctagtttttttttcaaatgaaatgtaCCCTGTAAATAGATATAT
TTTTGTACATATAGCAGTCATTATTCAAGATCTTTTGATAAGGATTTAAT
CTAAAGATAAATAAGAC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_015638	XLOC_015638	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000642	supercontig	sc0000642:9728..15944 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
32.7887	25.1226	9.82145	9.9931	11.3917	11.4994	12.4355	14.3352	8.77156	11.3393	13.9732	8.54998	6.57664	5.99114	8.76745	9.88454	22.0097	18.0874	4.37371	5.13883	10.3157	12.4591	44.9547	33.5463	13.7835	15.1274	7.61225	8.34481	26.5726	28.2504

Blast

[Close]

BLAST of TCONS_00027701 vs. Swiss-Prot (Human)
Match: RT35 (28S ribosomal protein S35, mitochondrial OS=Homo sapiens GN=MRPS35 PE=1 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 1.101e-62
Identity = 110/227 (48.46%), Postives = 147/227 (64.76%), Query Frame = 2

Query:    2 AVSRRTKGAPRHNRRGQNVLPRSESLNLDVTDWSDVFEAAQSYNPGVVPLPLRMGRPRTNKVGDVPPHDKGNIELLKIPNFFHLTPPAIKKHCEALTEYCSPWPEDIG-------HRPIRITTINHIYAGPSIRHPDSNKVKLQVYLKDLELDDHARTKLIRLVGHRYNRANDELTIITKSCPTRKQNKDYAYYLLTALYHEAWKTEDWEIEAEGKTDEEIQQEIDE 661
            ++  RT G  R  RR + + PR+E + +D  DW  V+  A  + P  VPLP+RMG P   K G VP   +GN+ELLKIPNF HLTP AIKKHCEAL ++C+ WP  +        H PI I + +++ +GPS+R+P +  V L+V L  L LDDHA+ KLI+LVG RY +  D LTI T  CP R+QN DYA YLLT LYHE+W TE+WE   + KT+ ++++ I E
Sbjct:   36 SLPERTPGNERPPRR-KALPPRTEKMAVD-QDWPSVYPVAAPFKPSAVPLPVRMGYPV--KKG-VPMAKEGNLELLKIPNFLHLTPVAIKKHCEALKDFCTEWPAALDSDEKCEKHFPIEIDSTDYVSSGPSVRNPRARVVVLRVKLSSLNLDDHAKKKLIKLVGERYCKTTDVLTIKTDRCPLRRQNYDYAVYLLTVLYHESWNTEEWE---KSKTEADMEEYIWE 254

The following BLAST results are available for this feature:

BLAST of TCONS_00027701 vs. Swiss-Prot (Human)

BLAST of TCONS_00027701 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RT35	1.101e-62	48.46	28S ribosomal protein S35, mitochondrial OS=Homo s...	[more]

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TCONS_00027701 (transcript) - C. hemisphaerica