|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027697 ID=TCONS_00027697|Name=TCONS_00027697|organism=Clytia hemisphaerica|type=transcript|length=1245bp
GTTCAGTGTTCAAATACTTCATATGAACAGAAAGTCTAATGAAGAGATTT
CATGAGAAGAACTATATAttacaaaaatagaaaattgtCTTCGTTAACCT
GCTGCTCTTTTAACGCCGAGTTCTTCACATTATCACGAAACATGGAACAT
TGGAATGTTACATACACAGAAACTATCCATGATATGTATAATCAAATGAA
GATTCAGATTGTCGTACAATCAATACTTTTAATACCGAATGTACTTTTGT
TGATTGCGTTATTGAAGACAAGAAAGAACAATAATTTGGTTGGAAAATTA
TTTATTGGAATATGTATCAGTGATAGTTTATTTCTTCTCGGTCACATTAT
GATGTCTTCTAGTGCATTCTTTTATTTGCAGTATGAACAGATTCACCTCA
TGCAAGGCTTACTGCTATCAATAACGACATTTCTTCAATCAGTTGGAATA
GTAATGTTTACAATTACATCATACTTGAGATATTATTCTTTAAAGGAACC
ATTCTCATTCATAGATAGTAAAATCATTTACAGATTCATTTCTATGGATT
TGATATGTTGTTTGCCACTAGCAATCTggtatttctttattttttataac
acTCCACTGGAAGATTTAATGGACTTTGAAAAGTCTAAACAAgcagaact
ttttcaaaacatatgtggaagttttaacatttttatcatCGTATTTAATG
TTATTCTCAACTACTTATCTGGTCGTCACGTCCAAAagtctgaaaagaaa
aaagtaacgATAAAAGGAAGCACTTCCATAGTCTCTATGAATTCAAACTC
AACAAAAATGAATTATAGTTGTGATATTGACAATGACAAATCGGCGAAAT
CGAAATTGAAGGGCGTCAAAACACTAAGTTACATAACTCTATTTTACATT
ATATGCACCACGCCTCTTATGCTCAAGATGGTTATCAAAAAACCTAGCAG
CAATAGTGATGCTGGTAAAGCTTTGTTTTATCTGTATATGTCCAACGTTG
CAATCAACTCCTCCATTTATCTAGCTCGAACAAAAGCAGTTAGAGACTTT
TACGTAAAGCCTATGTGCAGAATTTGGGAGCAAATCTTTCTTTCATGGAA
TGGCTAATCAACGTGaaagaaaaaatgtattttacatGGATCACAAATTG
AAGGACAAATCCAGATTATTTATTTAACCAAGTATATCATGCACCTATAt
aatacctgtaggcaaaaacagccatttaaTAATTCCTGATGTAAC Run BLAST on NCBI protein sequence of TCONS_00027697-protein >TCONS_00027697-protein ID=TCONS_00027697-protein|Name=TCONS_00027697-protein|organism=Clytia hemisphaerica|type=polypeptide|length=351bp
MRRTIYYKNRKLSSLTCCSFNAEFFTLSRNMEHWNVTYTETIHDMYNQMK
IQIVVQSILLIPNVLLLIALLKTRKNNNLVGKLFIGICISDSLFLLGHIM
MSSSAFFYLQYEQIHLMQGLLLSITTFLQSVGIVMFTITSYLRYYSLKEP
FSFIDSKIIYRFISMDLICCLPLAIWYFFIFYNTPLEDLMDFEKSKQAEL
FQNICGSFNIFIIVFNVILNYLSGRHVQKSEKKKVTIKGSTSIVSMNSNS
TKMNYSCDIDNDKSAKSKLKGVKTLSYITLFYIICTTPLMLKMVIKKPSS
NSDAGKALFYLYMSNVAINSSIYLARTKAVRDFYVKPMCRIWEQIFLSWN
G Run BLAST on NCBI transcript from alignment at sc0000639:164689..165933 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027697 ID=TCONS_00027697|Name=TCONS_00027697|organism=Clytia hemisphaerica|type=transcript|length=1245bp|location=Sequence derived from alignment at sc0000639:164689..165933 (Clytia hemisphaerica)
GTTACATCAGGAATTAttaaatggctgtttttgcctacaggtattaTATA
GGTGCATGATATACTTGGTTAAATAAATAATCTGGATTTGTCCTTCAATT
TGTGATCCatgtaaaatacattttttctttCACGTTGATTAGCCATTCCA
TGAAAGAAAGATTTGCTCCCAAATTCTGCACATAGGCTTTACGTAAAAGT
CTCTAACTGCTTTTGTTCGAGCTAGATAAATGGAGGAGTTGATTGCAACG
TTGGACATATACAGATAAAACAAAGCTTTACCAGCATCACTATTGCTGCT
AGGTTTTTTGATAACCATCTTGAGCATAAGAGGCGTGGTGCATATAATGT
AAAATAGAGTTATGTAACTTAGTGTTTTGACGCCCTTCAATTTCGATTTC
GCCGATTTGTCATTGTCAATATCACAACTATAATTCATTTTTGTTGAGTT
TGAATTCATAGAGACTATGGAAGTGCTTCCTTTTATcgttacttttttct
tttcagactTTTGGACGTGACGACCAGATAAGTAGTTGAGAATAACATTA
AATACGatgataaaaatgttaaaacttccacatatgttttgaaaaagttc
tgcTTGTTTAGACTTTTCAAAGTCCATTAAATCTTCCAGTGGAgtgttat
aaaaaataaagaaataccAGATTGCTAGTGGCAAACAACATATCAAATCC
ATAGAAATGAATCTGTAAATGATTTTACTATCTATGAATGAGAATGGTTC
CTTTAAAGAATAATATCTCAAGTATGATGTAATTGTAAACATTACTATTC
CAACTGATTGAAGAAATGTCGTTATTGATAGCAGTAAGCCTTGCATGAGG
TGAATCTGTTCATACTGCAAATAAAAGAATGCACTAGAAGACATCATAAT
GTGACCGAGAAGAAATAAACTATCACTGATACATATTCCAATAAATAATT
TTCCAACCAAATTATTGTTCTTTCTTGTCTTCAATAACGCAATCAACAAA
AGTACATTCGGTATTAAAAGTATTGATTGTACGACAATCTGAATCTTCAT
TTGATTATACATATCATGGATAGTTTCTGTGTATGTAACATTCCAATGTT
CCATGTTTCGTGATAATGTGAAGAACTCGGCGTTAAAAGAGCAGCAGGTT
AACGAAGacaattttctatttttgtaaTATATAGTTCTTCTCATGAAATC
TCTTCATTAGACTTTCTGTTCATATGAAGTATTTGAACACTGAAC Coding sequence (CDS) from alignment at sc0000639:164689..165933 >TCONS_00027697 ID=TCONS_00027697|Name=TCONS_00027697|organism=Clytia hemisphaerica|type=CDS|length=1056bp|location=Sequence derived from alignment at sc0000639:164689..165933 (Clytia hemisphaerica)
TTAGCCATTCCATGAAAGAAAGATTTGCTCCCAAATTCTGCACATAGGCT
TTACGTAAAAGTCTCTAACTGCTTTTGTTCGAGCTAGATAAATGGAGGAG
TTGATTGCAACGTTGGACATATACAGATAAAACAAAGCTTTACCAGCATC
ACTATTGCTGCTAGGTTTTTTGATAACCATCTTGAGCATAAGAGGCGTGG
TGCATATAATGTAAAATAGAGTTATGTAACTTAGTGTTTTGACGCCCTTC
AATTTCGATTTCGCCGATTTGTCATTGTCAATATCACAACTATAATTCAT
TTTTGTTGAGTTTGAATTCATAGAGACTATGGAAGTGCTTCCTTTTATcg
ttacttttttcttttcagactTTTGGACGTGACGACCAGATAAGTAGTTG
AGAATAACATTAAATACGatgataaaaatgttaaaacttccacatatgtt
ttgaaaaagttctgcTTGTTTAGACTTTTCAAAGTCCATTAAATCTTCCA
GTGGAgtgttataaaaaataaagaaataccAGATTGCTAGTGGCAAACAA
CATATCAAATCCATAGAAATGAATCTGTAAATGATTTTACTATCTATGAA
TGAGAATGGTTCCTTTAAAGAATAATATCTCAAGTATGATGTAATTGTAA
ACATTACTATTCCAACTGATTGAAGAAATGTCGTTATTGATAGCAGTAAG
CCTTGCATGAGGTGAATCTGTTCATACTGCAAATAAAAGAATGCACTAGA
AGACATCATAATGTGACCGAGAAGAAATAAACTATCACTGATACATATTC
CAATAAATAATTTTCCAACCAAATTATTGTTCTTTCTTGTCTTCAATAAC
GCAATCAACAAAAGTACATTCGGTATTAAAAGTATTGATTGTACGACAAT
CTGAATCTTCATTTGATTATACATATCATGGATAGTTTCTGTGTATGTAA
CATTCCAATGTTCCATGTTTCGTGATAATGTGAAGAACTCGGCGTTAAAA
GAGCAGCAGGTTAACGAAGacaattttctatttttgtaaTATATAGTTCT
TCTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027697-exon-sc0000639-1491911889:164689..165933 | TCONS_00027697-exon-sc0000639-1491911889:164689..165933 | Clytia hemisphaerica | exon |
| TCONS_00027697-exon-sc0000639-1510915933:164689..165933 | TCONS_00027697-exon-sc0000639-1510915933:164689..165933 | Clytia hemisphaerica | exon |
| TCONS_00027697-exon-sc0000639-1575043694:164689..165933 | TCONS_00027697-exon-sc0000639-1575043694:164689..165933 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000639 | supercontig | sc0000639:164689..165933 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
|
