TCONS_00027684 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027684
Unique NameTCONS_00027684
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3430

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027684 ID=TCONS_00027684|Name=TCONS_00027684|organism=Clytia hemisphaerica|type=transcript|length=3430bp
ttattttctaattcgtacctcaaacgaaaataacatatttatttcaacac
caatcgtatattttataaaaaagcctTAGAAACTTTTTACAAATAGATAA
GTATAACAATAGATCTAGTGATAAGCTGAGAATGAACACTGTGACAGTCA
CAGAGTGGTCTGGGAAAATCAAATACAAGCTGAAAACTATAAGCCTAGGT
TCATTGAAACTGATAACAGATCGGAAAGTTTATCTTTCACATAGCCGTCT
TTGGCCCTTTCACTTTTCCATCTGCCGTGACGTTTAAATAGTCTATCCGG
GACTCCTTCGTTCGCAGCTGCAGTGGCTCCACCAGAGCGTAAGCTGTGCA
AgccaaagtttttctttttcaaaccaATTCGCGTAACCATGTCGAGCATG
TTTGATCTTGCTGCAGAGTAAGACAACGGCTTGTTCTTTGTTCGTAGCTT
GTGGATTTTAGACTTTTTGAAGTAGTTCATGCCACGAAACAgaaatttgt
tcgaatttttGCGAGTATTAGTTTTCAAGAGGTAACGTCTTAGGATTCTT
AGTGGGCAGATGGGGGAGTCAAGTTTTGATATTAGTAGCCAGTGCCCGTC
TCTGTAGATATCTGTTTTGCTCTTTTCAATGAAGATTTCGATTTGAGTGC
GTTCCCACTTTATATCACTGCCTCTCATATCGGAAACTTCGGAGTACCTT
AAGAAGCCTGCATAGCTCAGAACCATCATAGTGAAAGTTCTTAAATCTAA
AGTTGTACAGTTTTTACTCTTACCAATGTTGATGTAAATTTTTCTGAGGT
GACTTGCTGTGATTGGTTCTTTCTTGTTCTGTTTTGTTTTCTGGCGTTTT
GATGCTTCGAGGATAAGCAGACATAGGTGTGAGATGAAGGGGCTGTTGCA
GAGGTTCAACTTGTGGTAGTATTCGATGGCATAAAATGTTGATTCGATGA
CGTGGGATGACTTCTTATTTTGCAGGAGATTGACCAGGTACAGAGCTACG
TGTTTCTCTTTGGCTGGAATTGCGGTAATGTTGTAGGAATTGCACCAAAC
TTCCCATCTGTTGAAGTATGATCTATATTTCTTGACGGTGTTTTCGGCAC
GGCTTTTCAAAATGATACCAGGGACTTGATTAGCGAGACGTTTCAAATGT
GGATGTTTAACTGATTCGGCAATTGACGCAACGAGATAATCTAAATGTAG
AGGAGAAAAAACGCCAGAAAGGACGATTCTAGATGTAAGAAATGGGAGAG
CAATTTCGCTGTAGAGAAAAATTATATAGCCCGATTTCTTCTTCCATATA
CGTACTTCCCCGTGGGTCAGGGACCCAGCAGAAGATTTTCGAGTACTTCC
CCGTGGGTCAGGGACCCAGCAGAAGATTTAAGAGTCGTTGTGTGCCGGGC
ACATGTATTTGGTCCGGGACGCAATTCTTCCCCATGAGTCAAGGACTCAG
CAGAAGCTTCCCCATGGGTCAGGAACCCAGCGGAAGATTTGTACGTGTTT
CAGCCCTTTCTTCTCCGTGGGTGAGGGACCCAGCAGAAGAGGTAAGATTT
AGCAAAGTTTGTGTGATCTTTCAGACGATAACGAAAATACATTATCTGAT
AATGTTTTTGGAATCGAATTTGAACGCAATCATTGAGCCCCTGTATTTGT
CTGGGGATAGCATTATAAGTTCGTTAGTTGGCTTCTCAAGGATCTCTCTC
CCTTTTGTGATGATTATAGATTCTACTAACATTCTACTGTAGAATTCGTC
TCGGATCATAGACCAAAATGGGGCAGATTTCCACAAGGGGATCACGAGGG
TACCTTTGCATTGACTATGTAAGATAAACTTTAGGGCTTCTGGGATAAGA
TCGACCGGTGGAACTACGTAATTTATCTCGTTGGACCAGTTTTCTGAAAA
CGCGTCCACTGCTTCGGAGCCTgggacaaaaaatttcgaattgaACCTCG
GCAATTTTGTGTTTTCTGGGCGTGCAAAGCGATCTACTGAGAAAGGACCC
CAACGTTTGTTCAAAAAGGTAAAGAATTCGTCTGTAATTTGCCAGTCGTC
AAAGTCAATATACTTAGAAATTTCGTCTGCTGTCTCGTTCTCCTCCCTTG
GGATCCAGTTTATTTTCAGGGTAATTAAACTAGCTGcacaaaaattgaat
atgtcaAGGGCAAGGTCTTGCAGATGTTTTTTACGACTACCTTTTGAGAC
GATGAGTGAAGCGGCAAAATTGTCTGTGAACCAGTTAATGGATTGTCTCG
TTAGAAGCTGCTTAAATGATCGAAGACTGTATAAAATAGCCGAAAGTTCT
CTCCATGTTGAGCTAAGACCTTGCTCTTTTGGGTCAAGATTTCTATGGCT
TTCCGCCCCTAGGGCTGGGATATGACTCCCGATACCAAAATCACTTGCGT
CAGAATAAACGTTTACAAAGGTGGCCCTGTGCTCCGAAATAAATCTGTGA
TTAAGCCGACGTAAATTTCCCAACCAAAATTCAAGCTCTCTAATTGCCTG
TGGGAATTTCTTTAGTGAAATGGGAGCGTCCCAAGCCACCTCACTATCGA
TTGCTTCGTACAAGTAACGAGATTTTAATTGAGTAATATCGCCTAATACA
AATTTCATAGAAATTATAGAGCCTGCTacttttgacaaaattctaGATGT
AACTCGTTTCAGGGTTAGGGTCTCGATTATCAAATCAATTAAGGCTTCGA
TCCTTTTTTCTGTGATAAAGTAGGCGTTCTCTGAGAAGTCGATAATTACT
CCCAGCCATGTCAGTCGTTTCTGGGGGTGCCAAACAGATTTTTCTTCGTT
TACTACAAAACCAGACGATTTAAGTGACCGCCTGACAAATTTTGGAGCTC
CAAATGGCTTTTACTGAATTAGACTCTGTCCCGCCCCCATCGTCGAGAAA
AACGCATATCTTAATGCCATGGTCGTGCCAGTAGGAGACCAAGGGTCTCA
GCAATTTTGTGAAAATCATTGGGGCAGAAGACAATCCAAAAGGTAGGaca
caaaatatgaaaattttctctGCCATCAAGATTCCAAGAGAATCCGAGAT
AGGTTTGGTGAGCCTCAGCTATTTCGACATGATAATAACCCTTCCTCAAG
TCAAATTTATAAGCAAATCCATTTTCGGAAATAAGATTTTTGAGTGACCC
CCAGTCATCGAACGAAATCCTCTCTTTAAATAGGTGAGCGTTGACATAAC
GTAAATCGAGAATTAGCCTTTTCTTTCCAACGCTGTTTGAAGCAACTGAA
AGGGGACTAATAACCTTTGGTGCAAACTCTACCTCCCTGGCCGAGCCGTC
TTGAAGTAAATCCCTTATCGATTCTGAAACaaattctttgttttcgagtg
cggatttgttgttgtttgaaaTGCTTCGTTCAGGAATGTCGACAAATGGC
AAAAAATATCCGTATTTGATGATGTCTAGA
Run BLAST on NCBI

transcript from alignment at sc0000639:39204..43807-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027684 ID=TCONS_00027684|Name=TCONS_00027684|organism=Clytia hemisphaerica|type=transcript|length=4604bp|location=Sequence derived from alignment at sc0000639:39204..43807- (Clytia hemisphaerica)
TTATTTTCTAATTCGTACCTCAAACGAAAATAACATATTTATTTCAACAC
CAATCGTATATTTTATAAAAAAGCCTTAGAAACTTTTTACAAATAGATAA
GTATAACAATAGATCTAGTGATAAGCTGAGAATGAACACTGTGACAGTCA
CAGAGTGGTCTGGGAAAATCAAATACAAGCTGAAAACTATAAGCCTAGGT
TCATTGAAACTGATAACAGATCGGAAAGTTTATCTTTCACATAGCCGTCT
TTGGCCCTTTCACTTTTCCATCTGCCGTGACGTTTAAATAGTCTATCCGG
GACTCCTTCGTTCGCAGCTGCAGTGGCTCCACCAGAGCGTAAGCTGTGCA
AGCCAAAGTTTTTCTTTTTCAAACCAATTCGCGTAACCATGTCGAGCATG
TTTGATCTTGCTGCAGAGTAAGACAACGGCTTGTTCTTTGTTCGTAGCTT
GTGGATTTTAGACTTTTTGAAGTAGTTCATGCCACGAAACAGAAATTTGT
TCGAATTTTTGCGAGTATTAGTTTTCAAGAGGTAACGTCTTAGGATTCTT
AGTGGGCAGATGGGGGAGTCAAGTTTTGATATTAGTAGCCAGTGCCCGTC
TCTGTAGATATCTGTTTTGCTCTTTTCAATGAAGATTTCGATTTGAGTGC
GTTCCCACTTTATATCACTGCCTCTCATATCGGAAACTTCGGAGTACCTT
AAGAAGCCTGCATAGCTCAGAACCATCATAGTGAAAGTTCTTAAATCTAA
AGTTGTACAGTTTTTACTCTTACCAATGTTGATGTAAATTTTTCTGAGGT
GACTTGCTGTGATTGGTTCTTTCTTGTTCTGTTTTGTTTTCTGGCGTTTT
GATGCTTCGAGGATAAGCAGACATAGGTGTGAGATGAAGGGGCTGTTGCA
GAGGTTCAACTTGTGGTAGTATTCGATGGCATAAAATGTTGATTCGATGA
CGTGGGATGACTTCTTATTTTGCAGGAGATTGACCAGGTACAGAGCTACG
TGTTTCTCTTTGGCTGGAATTGCGGTAATGTTGTAGGAATTGCACCAAAC
TTCCCATCTGTTGAAGTATGATCTATATTTCTTGACGGTGTTTTCGGCAC
GGCTTTTCAAAATGATACCAGGGACTTGATTAGCGAGACGTTTCAAATGT
GGATGTTTAACTGATTCGGCAATTGACGCAACGAGATAATCTAAATGTAG
AGGAGAAAAAACGCCAGAAAGGACGATTCTAGATGTAAGAAATGGGAGAG
CAATTTCGCTGTAGAGAAAAATTATATAGCCCGATTTCTTCTTCCATATA
CGTACTTCCCCGTGGGTCAGGGACCCAGCAGAAGATTTTCGAGTACTTCC
CCGTGGGTCAGGGACCCAGCAGAAGATTTAAGAGTCGTTGTGTGCCGGGC
ACATGTATTTGGTCCGGGACGCAATTCTTCCCCATGAGTCAAGGACTCAG
CAGAAGCTTCCCCATGGGTCAGGAACCCAGCGGAAGATTTGTACGTGTTT
CAGCCCTTTCTTCTCCGTGGGTGAGGGACCCAGCAGAAGAGGTAAGATTT
AGCAAAGTTTGTGTGATCTTTCAGACGATAACGAAAATACATTATCTGAT
AATGTTTTTGGAATCGAATTTGAACGCAATCATTGAGCCCCTGTATTTGT
CTGGGGATAGCATTATAAGTTCGTTAGTTGGCTTCTCAAGGATCTCTCTC
CCTTTTGTGATGATTATAGATTCTACTAACATTCTACTGTAGAATTCGTC
TCGGATCATAGACCAAAATGGGGCAGATTTCCACAAGGGGATCACGAGGG
TACCTTTGCATTGACTATGTAAGATAAACTTTAGGGCTTCTGGGATAAGA
TCGACCGGTGGAACTACGTAATTTATCTCGTTGGACCAGTTTTCTGAAAA
CGCGTCCACTGCTTCGGAGCCTGGGACAAAAAATTTCGAATTGAACCTCG
GCAATTTTGTGTTTTCTGGGCGTGCAAAGCGATCTACTGAGAAAGGACCC
CAACGTTTGTTCAAAAAGGTAAAGAATTCGTCTGTAATTTGCCAGTCGTC
AAAGTCAATATACTTAGAAATTTCGTCTGCTGTCTCGTTCTCCTCCCTTG
GGATCCAGTTTATTTTCAGGGTAATTAAACTAGCTGCACAAAAATTGAAT
ATGTCAAGGGCAAGGTCTTGCAGATGTTTTTTACGACTACCTTTTGAGAC
GATGAGTGAAGCGGCAAAATTGTCTGTGAACCAGTTAATGGATTGTCTCG
TTAGAAGCTGCTTAAATGATCGAAGACTGTATAAAATAGCCGAAAGTTCT
CTCCATGTTGAGCTAAGACCTTGCTCTTTTGGGTCAAGATTTCTATGGCT
TTCCGCCCCTAGGGCTGGGATATGACTCCCGATACCAAAATCACTTGCGT
CAGAATAAACGTTTACAAAGGTGGCCCTGTGCTCCGAAATAAATCTGTGA
TTAAGCCGACGTAAATTTCCCAACCAAAATTCAAGCTCTCTAATTGCCTG
TGGGAATTTCTTTAGTGAAATGGGAGCGTCCCAAGCCACCTCACTATCGA
TTGCTTCGTACAAGTAACGAGATTTTAATTGAGTAATATCGCCTAATACA
AATTTCATAGAAATTATAGAGCCTGCTACTTTTGACAAAATTCTAGATGT
AACTCGTTTCAGGGTTAGGGTCTCGATTATCAAATCAATTAAGGCTTCGA
TCCTTTTTTCTGTGATAAAGTAGGCGTTCTCTGAGAAGTCGATAATTACT
CCCAGCCATGTCAGTCGTTTCTGGGGGTGCCAAACAGATTTTTCTTCGTT
TACTACAAAACCAGACGATTTAAGTGACCGCCTGACAAATTTTGGAGCTC
CAAATGGCTTTTACTGAATTAGACTCTGTCCCGCCCCCATCGTCGAGAAA
AACGCATATCTTAATGCCATGGTCGTGCCAGTAGGAGACCAAGGGTCTCA
GCAATTTTGTGAAAATCATTGGGGCAGAAGACAATCCAAAAGGTAGGACA
CAAAATATGAAAAATTTTTCTCTGCCATCAAGATTCCAAGAGAATCCGAG
ATAGGTTTGGTGAGCCTCAGCTATTTCGACATGATAATAACCCTTCCTCA
AGTCAAATTTATAAGCAAATCCATTTTCGGAAATAAGATTTTTGAGTGAT
CCCCATTCATCGAACGAAATCCTCTCTTTAAAAAGGTGAGCGTTGACATA
ACGTAAATCGAGAATTAGCCTTTTCTTTCCAACGCTGTTTGAAGCANAAA
TGATCGAAGACTGTATAAAATAGCCGAAAGTTCTCTCCATGTTGAGCTAA
GACCTTGCTCTTTTGGGTCAAGATTTCTATGGCTTTCCGCCCCTAGGGCT
GGGATATGACTTCCGATACCAGAATGACTTGCGTCAGAATATACGTTTAC
AAAGGTGGCCCTGTGTTCCGAAATAAATCTGTGATTAAGCCGACGTAAAT
TTCCCAACCAAAATTCAAGCTCTCTAGTTGCCTGTGGGAATTTCTTTAGT
GAAATGGGAGCGTCCCAAGCCACCTCGCTATCGATTGCTTCGTACAAATA
ACGAGATTTTAATTGAGTAATATCGCCTAATACAAATTTCATAGAAATTA
TAGAGCCTGCTATTTTCNTACTTCGGTGCCTTCAAAGTCTTTGACCAGAA
ATCCAGTTTAGGCTTAAGTTTTCCTTTTACAGAGTTTGTTTCAGAATTAA
CAAGAAAATTGGAATTACACTTATCTTTAGTTTCTGGAGTTTCTTCTGGA
TTTTCTTTCAGGGCACTCGTGTCGCCAGTGGCCATATCTGTTACATGCAA
GGCAACGTTCATTCGATCTGGATTTGCTGTATTTTGTCGTGTAACGGCTC
CCAGAAGACGACTCGGGGTTCCGGGACAAAGTTGAGGATTGCTTGAATCT
CTTCGAAGGTTTAGGTTNTTACTCCCAGCCATGTCAGTCGTTTCTGGGGG
TGCCAAACAGATTTTTCTTCGTTTACTACAAAACCAGACGATTTAAGTGA
CCGCCTGACAAAGTTGGAGCTCGAAATAGCTTTGACTAAATTAGACTCTG
TCCCGCCCCCATCGTCGAGAAAAACGCATATCTTAATGCCATGGTCGTGC
CAGTAGGAGACCAAGGGTCTCAGCAATTTTGTGAAAATCATTGGGGCAGA
AGACAATCCAAAAGGTAGGACACAAAATATGAAAAACTTTTCTCTGCCAT
CAAGATTCCAAGAGAATCCGAGATAGGTTTGGTGAGCCTCAGCTATTTCG
ACATGATAATAACCCTTCCTCAAGTCAAATTTATAAGCAAATCCATTTTC
GGAAATAAGATTTTTGAGTGACCCCCAGTCATCGAACGAAATCCTCTCTT
TAAATAGGTGAGCGTTGACATAACGTAAATCGAGAATTAGCCTTTTCTTT
CCAACGCTGTTTGAAGCAACTGAAAGGGGACTAATAACCTTTGGTGCAAA
CTCTACCTCCCTGGCCGAGCCGTCTTGAAGTAAATCCCTTATCGATTCTG
AAACAAATTCTTTGTTTTCGAGTGCGGATTTGTTGTTGTTTGAAATGCTT
CGTTCAGGAATGTCGACAAATGGCAAAAAATATCCGTATTTGATGATGTC
TAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015621XLOC_015621Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027684-exon-sc0000639-1575043694:40795..43807TCONS_00027684-exon-sc0000639-1575043694:40795..43807Clytia hemisphaericaexon
TCONS_00027684-exon-sc0000639-1575043694:39204..39620TCONS_00027684-exon-sc0000639-1575043694:39204..39620Clytia hemisphaericaexon
TCONS_00027684-exon-sc0000639-1510915933:40795..43807TCONS_00027684-exon-sc0000639-1510915933:40795..43807Clytia hemisphaericaexon
TCONS_00027684-exon-sc0000639-1510915933:39204..39620TCONS_00027684-exon-sc0000639-1510915933:39204..39620Clytia hemisphaericaexon
TCONS_00027684-exon-sc0000639-1491911889:40795..43807TCONS_00027684-exon-sc0000639-1491911889:40795..43807Clytia hemisphaericaexon
TCONS_00027684-exon-sc0000639-1491911889:39204..39620TCONS_00027684-exon-sc0000639-1491911889:39204..39620Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000639supercontigsc0000639:39204..43807 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.28961	1.28555	0.301137	0.434557	0	3.82862e-07	0.0155682	0	0	0.034774	0.2109	0.0788173	0.00147669	0.0690658	0.140907	0.126028	0.0773892	0.033318	0.0849902	0	0.0327392	0	0.515385	0.537157	0.0890736	0.263601	0	0	0	0.485043
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027684 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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