TCONS_00027682 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027682
Unique NameTCONS_00027682
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1582

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027682 ID=TCONS_00027682|Name=TCONS_00027682|organism=Clytia hemisphaerica|type=transcript|length=1582bp
TAGAATTCTGATTTTCTTTAAGTGTTAGAAAAAAGCCATGTCCTACCATA
GATTTGACACTAGTGAAACACAAAGTGTTCCCATGCACCATGGAGTACAA
CATCAAAACACAACAATGGTCGTTGCTGCTGGAGGAGCACAACCAGTCCC
TATCATTGTTGCACAACAACCTTACAATCGTTTTGCTGCCAAAGCTCCGG
CAACTAAGAAACTAGGAATATGGATTCTAATGAATGGAATTGTTACTTTC
ATTTTTGGCATTGCCATGATATCGGCAATTGATTATTGGACTTCGTACAC
TGCTAGTGGCCTATGGTCAGGAGTATTTGTGATCATCGCTGGATCACTTT
GTATTGGTGCTGGTGCCAATGAAAACAATACTTGCTTACGAATTGGTGCA
CTGGTGATGAATATCATTGGAATGCTCGCTACCCTAAGTTCTTGTCTTTT
GATGTTTGTCGGATTCGGACTGGGAATGGGATGCGATCGTAGACGATGTT
ACACAAATTATGATGGACGATGGGTTTGCAGCAGAAGTAGTTGCGGCCGC
CATTTTGACGACACTAAAGAAGGCAGTTACATCTCACTTGCTGTAGCTCT
CTTAAATGTTATTGTTTTTGTATTGATGTTGATTGCTTCTGTTTATGCTG
GCTGTGGTTGCTGTTGTCGCCGTAATGGTAACTCAACGCAATCCCAAGGT
AACATCGTAATGGCTCCTACCCAACAGTCTTATGGTGGCCCAGTCGTGGT
TTCCAGCAATCAAGCCTACTCACACCAAGCATACTCGCAACCGCAATCTC
ACACTGGTCAGCCACAGCAATACAGTCAAGCAGCAATGCCATCAGCTAGT
GGTGGTCAAGTCACATATGGTAATGATTATCAGCAACAACCAAGACAAGA
AGAACAAAAATTTATGCCTCCTCAAGATGTACCTCCAGCATATTCAAGAA
ACTAACCACAATTCGATGAATGGAAACCGTGTTTTttagccagaaacagc
tattttgtccagtttttgcgctttttgaagctcaatatctcgagttaggt
actgaaatcacctatacttgcaatatatctctaatcttcattttttgaga
GCGTTCCAAAAAtttacaacaggtctccgttttctcgaactaaaattttc
attaatttttaaccctatgatttttgcctgagaccgtcatatttgtccga
aaatcacaccaaagtgtccgaaaaaaaattggaaacatcgtaatttcgat
tcccttaccccttagctttccaaaaatgtataacaagtgctttgatcaaa
acatttgagcgattttacaaaatgccctctactaataCCCCGATCAGAGA
AAGAcaagaatttgtttttttctattctTCATCCACGAGAGCCTTCCCCT
TCTTACCAACTGGCAGACATCAAATTGGGCAAGAGGTTTGTAAACCTAGG
CTGGGTAAATAGTAAATAGAAATTGAAATATGTAGTAAGTagtgttttat
tttttagccATATACtattctttgaaaattattgaaattaatTGTCAGTG
CGACTAAGCAGACGTTCTTAAATAAATCGTGA
Run BLAST on NCBI

transcript from alignment at sc0000639:110147..117022+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027682 ID=TCONS_00027682|Name=TCONS_00027682|organism=Clytia hemisphaerica|type=transcript|length=6876bp|location=Sequence derived from alignment at sc0000639:110147..117022+ (Clytia hemisphaerica)
TAGAATTCTGATTTTCTTTAAGTGTTAGAAAAAAGCCATGTCCTACCATA
GATTTGACACTAGTGAAACACAAAGTGTTCCCATGCACCATGGAGTACAA
CATCAAAACACAACAATGGTCGTTGCTGCTGGAGGAGCACAACCAGTCCC
TATCATTGTTGCACAACAACCTTACAATCGTTTTGCTGCCAAAGCTCCGG
CAACTAAGAAACTAGGTATTTATCAACCTGATCCTAGTGTATcctaggct
ttatttacgttactgacgGACGCCATAGAGAACACCCTGTTGTTTGCTTT
TTTCGTAATATCGTAGATCTTTTTGCTTTTATCTGGTTAATGACTTGAAA
AAGTTGACTTATGTATTATACGTTTAACTCGTAGTTTTGGTATGTAAATG
TCCTGggatttatctttttttctgacgttaccCTTTTATTCAAATtgata
tttcacaaaaattaagcATTAACTGACTTACTGGCAGCTCATTTTAGGGT
CATTAAAAAACTTGTAGGTACTTGGATATTGATATTTCGCAAAAACTCGT
AATTATTTTTCGTAGGAATATGGATTCTAATGAATGGAATTGTTACTTTC
ATTTTTGGCATTGCCATGATATCGGCAATTGATTATTGGACTTCGTACAC
TGCTAGTGGCCTATGGTCAGGTACGTTAAACAAtagctctcaaaaaattt
ttgtcaacaaCTTGATATTGAAATCAGTGAGTTTTGTTGAATTGTACGAG
GTCCCTTTTACGGGCAGAATTGATGTTGCACTTTTTGTCATCTCAaaaat
gaagtcgttgcattgtttTTCGCGCGAGTTCTATTTTCTGCCAGTCAAAT
TGTgtcacgcattcgaaagattcgaaaatgttgcaatcaaaacattgaat
tcatttgtgagtttggttttgagaagaaaacattttctaaaacttaaacc
taaaatattgtgatcttattcatattttgaaaagactttgagaaacagaa
agttataaaatttattacatTGAGGTTGTAAGGGGTATGTATGTATGGAA
agaaatggaatgctttgtttgcttcagttttcactaCAGACTTTCCTCAC
TTTCCTcccttcgaaattcagttttcgatgggagcctttatttatctaaa
ctttgtttttattaatggtGATTCATTTTTGGACATCAAAAACTCCCAAT
GATAACCAGTAAGTTTTATTTGTTTTGGAGGTAAAAAATGCTAAAGAGAA
TGAGTAGATATGTGTCGAAATTGCGCTTCCATTGAAACGTGACATTGAcg
tttgaaaaaagatataacttcaaggcaaaaaaatctattaaaattggatt
acaacctgtacttttttatatatcattttttagcattttgtaTCCTCTTT
CACTTGCGATGGGTGGGAAAGTTGTCTAAATATACTTAAATCTCTGTCAT
CATTTTTGTCAttatagtgaggtctgttagcacaaaaatacttcagatgg
tgacaaaagcatgaaatttggcacagatgatccttagagggtctaaaact
taattttaaacagtaacaaaTTTtcccacctggccacctgccagatgacg
tcatcaggtggctgggcaaaaaataattttttgaaaatattcaaaatctg
atgatTTCAGCGGAAAGAACATGAAATactgatgaaaattgaggtataaa
acatgccttgaaaatcttcctatcaaaagttacgaaGGTTggaagttttg
tgatgacgtcatcatcacaagcctttccaggcaaaacctaaaaatcctgt
aataacggaactagttAACCAAATTTGgagttttatacatgaatccatgt
caGAAATCGAAGTTCCTtctgatgcttgggtctaaacGACATATCGTCTA
AAACGACATAAgaaggcttaaaacatccaaaaaaattagctgTGTTGTAC
ACTGTGTTCCTAAAGGGAGGAAGCTGCCTTGATTTGCCTTGTCAAAATCC
AAGTTTTAatactatactatactatactacTGTAGAATTTAAAGCTtcta
attcaatttgaaaatcagaatcagaaaaagaaatgaattttgatatgaat
tcatgtttaaaacataaaatttggtcaatttgttccaaaattacgaggtt
tttaagttttgccttgAAAGGCTTGTGAttacgtcatcacaaaactttca
acctccataacttttgataggaagattttcaaggcatgttttatacctca
atttttatcagcatttcatgctctttctgCTGANNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtacaattatac
accgaccagatcaggttttatgacttttttgtgcaggcatataataaaat
ccagctaaaaccctgtaaaatcccaaaatcttaaattttgcataactttt
gatctaggcatccaattgacttcaaactttgacaggttttaggtatcaat
gatagattttgaaaaatattttaaaaattttcaaaaactgctgacgtcat
cataaatgacgtcatttttttttgaaaaaatttactcattttctgcattg
attttaagcctcgattttattagtatattaaaaaccggcaaatatgttaa
agatattctttttggcttttagaaattcaaaacagaattgaaaaatctcc
attcgttcaactttaattgctattttattgaatagtactttttcattggt
cagcgataattgtgaaactttgtgatgacgtcatcacctttatgatgacg
tcatcaacccaaatttttttctatgaactccttttatggtagaggacctt
tgtgcaaaatttcaagtccataccttttctagatcaaaagttatgcaagg
ctggtggaaaacaccccaccttgagaatacaaaatccgaaaaagcctgat
aataatagggtgaaaccatcaaattttgaatattttcaaaagaataattt
tttgtccagccacctgatgacgtcatctggcaggtggccaggtagGAAAA
Ttcggtgttactgtttaaaactaagttttagaccctctaaggatcacctg
tgccaaatttcatgctttaattaccatctgaagtatttttacGTTCTTAT
ATGCTAACAGGCCTCACTATTAACGTCAGAATTTATCAgccttttttttt
ttcgtcagaGTGACAGTGCCTATCTTTAGGACAAAAAAGTCGATGGAAAA
AAGGGCTGGACTTTCTTTCTAGAGGGGTGGGAAGTTGAAAGGTATTAATT
TTGTATCGTTCCTGCTCTCTTAAAGTTTgtcaaattatcaaaaacatata
aaaaagtaACCTTTACATTATcgcttcaaacttttttacaaacttaCAAA
TCTAAGCAAGTTTGGTATTTCTTAAAAGAGGACAGATTCAGtgattcaaa
aatatcaaatttatgtCTTAAAACGTTATACACAGGAAGCAGTGTAATAA
ACAAGGGGAGGGAAAAACTAAGAAATTTGCAACTtctaattttttgacgt
caaaatctaCGCCAAAACCCTGGGGATTTGTTTCATGTCAAAAATTATAA
CGTCAATTCTGCGCGATGGTTTACGTGATACGGTGATGGCGTGATTCCAA
ATTTTATATGATGGCGTGATCATCGATATTTTTTGAGTGAGAAACCAATT
TTAGCAATTTATGTGATCGCGTTGGGTCTCTATTATCCCCAGAAGGGGTA
TCCAGGGCAAATGAATGGCAAGGTTACATGACATTCTCAAGGATGTCTTT
TGGGTCTTTAAAATTAGGATAAGGTTGAGAAAAAGGAATTGTAAATAAGA
TAGGACTGCATAGGAACTTTGGGTTTGTCTTTATCATCGATGTTTTTTCC
TTAGGAGTATTTGTGATCATCGCTGGATCACTTTGTATTGGTGCTGGTGC
CAATGAAAACAATACTTGCTTACGAATTGGTGCACTGGTGATGAATATCA
TTGGAATGCTCGCTACCCTAAGTTCTTGTCTTTTGATGTTTGTCGGATTC
GGGtaaggtttttatttttattaagaAATTTTCTTATTAAGAAACGCAAA
GACTACTTCAGACTACCTACCTTTGCAAATAAATATCCTACATATTACGT
CCGCAGGTTTTATGTATTTCGAAGAGGGCAAAGTATGCAAATAAACAGGA
CCCGTCTGGTTcaatttaaatgaaattttgagagaaaCATGGCTCAAACA
TCTTTACTAGATTTAGGTCAATAGAAGCTACAATGCAGGAGGAAATACAA
AAATTTGGGTATAATTAGGGCAGCATTGACGTCATCACCGATATGAGAAT
GTGCAATTATAGATATTGCTAACATGAATCTACTATTACATTTCGAAAGT
TATTTGTAAGATTTGTCCTCTTAGACTGGGAATGGGATGCGATCGTAGAC
GATGTTACACAAATTATGATGGACGATGGGTTTGCAGCAGAAGTAGTTGC
GGCCGCCATTTTGACGACACTAAAGAAGGCAGTTACATCTCACTTGCTGT
AGCTCTCTTAAATGTTATTGTTTTTGTATTGATGTTGATTGCTTCTGTTT
ATGCTGGCTGTGGTTGCTGTTGTCGCCGTAATGGTAACTCAACGCAATCC
CAAGGTACCgtgttttattattattttgtcgATGGGAACTTCACCAAACA
AACTCGAACCACGTCCCTTAGCTTTTTAATGGTTCTGATAGCGCCAAAAG
CCATCGGTAAACTCAAAAAGGGGTGACTCTTGGTACAAAATTTTTTCAGC
AACCACCTTTCtaccagggatatgttatagcggagctggatgaaggacga
gaattcctttagcggattgcttctttgtattttctattgtaaactgttga
taatagaaatccatctctgtccccttgagtgttctgtttttataagaaaa
atgaagcagacaaagtattcatgcagtacgtttgcacatattatgctatg
atgttcccacttttcatcaaaataatatttgtagaagataccccaaaagc
ttccttgttaaatgaaatctatttttatcagcgtgtgttatgaatttgag
aagctttcatgatttctctttaaaaatttcggatgtaaatattttgacaa
atattgtttcgaTTGACTtggaattttttccataatcagacatacggact
tgctatctgaaaatatcagttagaaagtgagacaccccgcggtgtagcgc
ggtatttcaaatgaaaaagtactatttataatcttagagaagaaacttct
CATAACTTtacaatgaaaacaatgtttctcatttttttaaatcgtcattc
accaatgttttacagacccttttgataattaaaagtttttaatcgtgaac
gataaatgcagcagcatttaaaattcatatcaaattttaatgtcagggac
agagataaaacaaggcttttttaaatgtgcgttatccccTTATACCGAAA
TCGATCTGCTCTTTAGGTTGACAAAACTAATGTATGGTCTTGGAATAATA
TAGAATGTGGCTATTTTGAGCGATTATTGACATAGCAAAAAGCTAAGAGA
TTTTCTTTGCTTGATTATCATTATACTTTTACACTAAAACTTTTCTGAAT
CTTTCGATGTCATATAACAAGTTCCaaaatgttttagattcttcacacta
agatttctaaaaaagtggTCCCTCAACCCTACTATCTAGTATAGGAGTTT
GTTATTGTAAGTTAATGATCAATGGAATAAATTTATATACAGGTAACATC
GTAATGGCTCCTACCCAACAGTCTTATGGTGGCCCAGTCGTGGTTTCCAG
CAATCAAGCCTACTCACACCAAGCATACTCGCAACCGCAATCTCACACTG
GTCAGCCACAGCAATACAGTCAAGCAGCAATGCCATCAGCTAGTGGTGGT
CAAGTCACATATGGTAATGATTATCAGCAACAACCAAGACAAGAAGAACA
AAAATTTATGCCTCCTCAAGATGTACCTCCAGCATATTCAAGAAACTAAC
CACAATTCGATGAATGGAAACCGTGTTTTttagccagaaacagctatttt
gtccagtttttgcgctttttgaagctcaatatctcgagttaggtactgaa
atcacctatacttgcaatatatctctaatcttcattttttgagaGCGTTC
CAAAAAtttacaacaggtctccgttttctcgaactaaaattttcattaat
ttttaaccctatgatttttgcctgagaccgtcatatttgtccgaaaatca
caccaaagtgtccgaaaaaaaattggaaacatcgtaatttcgattccctt
accccttagctttccaaaaatgtataacaagtgctttgatcaaaacattt
gagcgattttacaaaatgccctctactaataCCCCGATCAGAGAAAGAca
agaatttgtttttttctattctTCATCCACGAGAGCCTTCCCCTTCTTAC
CAACTGGCAGACATCAAATTGGGCAAGAGGTTTGTAAACCTAGGCTGGGT
AAATAGTAAATAGAAATTGAAATATGTAGTAAGTagtgttttatttttta
gccATATACtattctttgaaaattattgaaattaatTGTCAGTGCGACTA
AGCAGACGTTCTTAAATAAATCGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015620XLOC_015620Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027682-exon-sc0000639-1491911889:110147..110361TCONS_00027682-exon-sc0000639-1491911889:110147..110361Clytia hemisphaericaexon
TCONS_00027682-exon-sc0000639-1510915933:110147..110361TCONS_00027682-exon-sc0000639-1510915933:110147..110361Clytia hemisphaericaexon
TCONS_00027682-exon-sc0000639-1575043694:110147..110361TCONS_00027682-exon-sc0000639-1575043694:110147..110361Clytia hemisphaericaexon
TCONS_00027682-exon-sc0000639-1491911889:110712..110816TCONS_00027682-exon-sc0000639-1491911889:110712..110816Clytia hemisphaericaexon
TCONS_00027682-exon-sc0000639-1510915933:110712..110816TCONS_00027682-exon-sc0000639-1510915933:110712..110816Clytia hemisphaericaexon
TCONS_00027682-exon-sc0000639-1575043694:110712..110816TCONS_00027682-exon-sc0000639-1575043694:110712..110816Clytia hemisphaericaexon
TCONS_00027682-exon-sc0000639-1491911889:114251..114398TCONS_00027682-exon-sc0000639-1491911889:114251..114398Clytia hemisphaericaexon
TCONS_00027682-exon-sc0000639-1510915933:114251..114398TCONS_00027682-exon-sc0000639-1510915933:114251..114398Clytia hemisphaericaexon
TCONS_00027682-exon-sc0000639-1575043694:114251..114398TCONS_00027682-exon-sc0000639-1575043694:114251..114398Clytia hemisphaericaexon
TCONS_00027682-exon-sc0000639-1491911889:114771..115000TCONS_00027682-exon-sc0000639-1491911889:114771..115000Clytia hemisphaericaexon
TCONS_00027682-exon-sc0000639-1510915933:114771..115000TCONS_00027682-exon-sc0000639-1510915933:114771..115000Clytia hemisphaericaexon
TCONS_00027682-exon-sc0000639-1575043694:114771..115000TCONS_00027682-exon-sc0000639-1575043694:114771..115000Clytia hemisphaericaexon
TCONS_00027682-exon-sc0000639-1491911889:116139..117022TCONS_00027682-exon-sc0000639-1491911889:116139..117022Clytia hemisphaericaexon
TCONS_00027682-exon-sc0000639-1510915933:116139..117022TCONS_00027682-exon-sc0000639-1510915933:116139..117022Clytia hemisphaericaexon
TCONS_00027682-exon-sc0000639-1575043694:116139..117022TCONS_00027682-exon-sc0000639-1575043694:116139..117022Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000639supercontigsc0000639:110147..117022 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	1.43688	0	0	0	0.0853096	0.205554	0.639469	0.000143525	1.23851	10.3604	8.5197	14.6428	13.0954	4.03181	4.4904	12.1284	10.7438	3.73216	1.69508	5.92812	5.13804	5.95338	3.48683	3.07353	6.78454	7.64815	7.73586
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027682 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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