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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027676 ID=TCONS_00027676|Name=TCONS_00027676|organism=Clytia hemisphaerica|type=transcript|length=949bp
NNAAAAGATGAACTATGGTGAAGAAATTGTAAGACAAATGATTTGACAAA
AAAGTGCAACaggaaaaaaaactaaaaagacgacaaaaatattctagacg
agAAAAGAAGTGAAAAGAGGAAATTTTCGAGGAATACTAGTCAATTCACC
AGCTCAACCCGGATATGGAGGTGTCGGGGTAGCATCAAGTAACTACCAGC
AAGTGCACCCCTACCCACCACCTACATCAGCTTCCTACCCTCAAACTTCG
GCACCCTACTCTCAACAACCAGCATACAATCCAAACCAACCACAATATTA
TCCACCACAGCAATACAGTCAAGCAGCAATGCCAACATCTAGTGGTGGTC
AAGTCACATATGGTAATGATTATCAGCAACAACCAAGACAACAAGAACAA
AAAGTTATGCCTCCTCAAGACGCACCACCAGCTTATTCTTGAAGAAATTC
TTAAGCACcataaaataaaagacaaaatcGACAACAAATGATTAATTAGC
ATTATAatcaaaataatatcaaattccTTCCGTATATTTATAAATCACTT
GCATTATTAGGtactatatatatttttagatttGTTATATATGGTAATTT
TGGATACTNATCAAATTCCTTCCGTATATTTATAAATCACTTGCATTATT
AGGtactatatatatttttagatttGTTATATATGGTAATTTTGGATACT
TTTATGATTTCGATAACTCTTTTCATTGAATAAAAACGATACCTACTTTA
ACAAACTTTTATGAGCCAATAAAAATTTAAACTGAAACTTTAGATTTGAA
CCAGGCCTGGACCTTAGTAACCCGGGGGCCACTGATAAGtgctttgcttg
aggtggtagcatAGCATGCCACTAGatatagactagtaaactagtcggtt
attacttataaccttataataaaactgtcaatcaaataatgtaaacact Run BLAST on NCBI transcript from alignment at sc0000639:102786..103875+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027676 ID=TCONS_00027676|Name=TCONS_00027676|organism=Clytia hemisphaerica|type=transcript|length=1090bp|location=Sequence derived from alignment at sc0000639:102786..103875+ (Clytia hemisphaerica)
NNAAAAGATGAACTATGGTGAAGAAATTGTAAGACAAATGATTTGACAAA
AAAGTGCAACaggaaaaaaaactaaaaagacgacaaaaatattctagacg
agAAAAGAAGTGAAAAGAGGAAATTTTCGAGGTTTAAATATTTGTAATAG
ATTCAAGAATATATATTTATTCAAAATCGTCAAAAGAAACTACTTGGTGA
AGGGCGAAGGCGAATACAGTTAGTAAAAGATCGGTTCTTACCGGTTTATT
TTTCTATCATTTTCATAAACAGGAATACTAGTCAATTCACCAGCTCAACC
CGGATATGGAGGTGTCGGGGTAGCATCAAGTAACTACCAGCAAGTGCACC
CCTACCCACCACCTACATCAGCTTCCTACCCTCAAACTTCGGCACCCTAC
TCTCAACAACCAGCATACAATCCAAACCAACCACAATATTATCCACCACA
GCAATACAGTCAAGCAGCAATGCCAACATCTAGTGGTGGTCAAGTCACAT
ATGGTAATGATTATCAGCAACAACCAAGACAACAAGAACAAAAAGTTATG
CCTCCTCAAGACGCACCACCAGCTTATTCTTGAAGAAATTCTTAAGCACc
ataaaataaaagacaaaatcGACAACAAATGATTAATTAGCATTATAatc
aaaataatatcaaattccTTCCGTATATTTATAAATCACTTGCATTATTA
GGtactatatatatttttagatttGTTATATATGGTAATTTTGGATACTN
ATCAAATTCCTTCCGTATATTTATAAATCACTTGCATTATTAGGtactat
atatatttttagatttGTTATATATGGTAATTTTGGATACTTTTATGATT
TCGATAACTCTTTTCATTGAATAAAAACGATACCTACTTTAACAAACTTT
TATGAGCCAATAAAAATTTAAACTGAAACTTTAGATTTGAACCAGGCCTG
GACCTTAGTAACCCGGGGGCCACTGATAAGtgctttgcttgaggtggtag
catAGCATGCCACTAGatatagactagtaaactagtcggttattacttat
aaccttataataaaactgtcaatcaaataatgtaaacact
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027676-exon-sc0000639-1491911889:102786..102916 | TCONS_00027676-exon-sc0000639-1491911889:102786..102916 | Clytia hemisphaerica | exon |
| TCONS_00027676-exon-sc0000639-1510915933:102786..102916 | TCONS_00027676-exon-sc0000639-1510915933:102786..102916 | Clytia hemisphaerica | exon |
| TCONS_00027676-exon-sc0000639-1575043694:102786..102916 | TCONS_00027676-exon-sc0000639-1575043694:102786..102916 | Clytia hemisphaerica | exon |
| TCONS_00027676-exon-sc0000639-1491911889:103058..103875 | TCONS_00027676-exon-sc0000639-1491911889:103058..103875 | Clytia hemisphaerica | exon |
| TCONS_00027676-exon-sc0000639-1510915933:103058..103875 | TCONS_00027676-exon-sc0000639-1510915933:103058..103875 | Clytia hemisphaerica | exon |
| TCONS_00027676-exon-sc0000639-1575043694:103058..103875 | TCONS_00027676-exon-sc0000639-1575043694:103058..103875 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000639 | supercontig | sc0000639:102786..103875 + |
Blast
The following BLAST results are available for this feature:
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