|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027670 ID=TCONS_00027670|Name=TCONS_00027670|organism=Clytia hemisphaerica|type=transcript|length=826bp
GTGACGTTGTCATCTAGTTCACTGTACGCGACAAAAAGTCTTCATTGTAG
TAAGCTGGCAATCACACCAGCATAtctgtttccccgatttcttcTCTGTC
TTCTTCCAACAAATGGTTGCTGTTCCTCTTCATCGGCATCATCCTCCCGT
TCGTCCTCATTTTGTTCGACTGGTTTTTCGACGGTATCTTGTTCTTCATT
GGTGGTTTCTTCTTCAGGCTGCGCAGGTGTTCTGTTTAAAGAGTTCTCAA
ATTCAATTGACAGACTGACAATCTCGTCGTAGTCGCTTCTTGGCAAGATG
TAGGTGACGGTATTATCAGACATATCCAAGGACATGCTGACAGTGATGAT
GCTCCCGTCTTTATCAAGCACAGCATCTTTGAATGGTTGACTGCCCCCTT
CCCAATTTGGATCTTTGAAGAACATGACAGATTCGGTACCGATTTCATCA
TCATTTGCAGCAACCAAAAAGTTTCCAACTATTTTGGTATTGTGTTTTAA
ATCAGCTATATTCCACGCCTGCGTTAACTGGATAAAATTTATGGGGTAGC
CATCGGACCCCCTCATCACTAACACCTCGCCAACAGCCAAAGCGTTCAAC
TGTAATTCGGTACTTCCTATTTGATGGCATTGTTGCAATAGCGTTAAGGT
GTTAGGAAGATTTTCGATGGCACGGCGTGAAGAGTGAACACCTAGAATTG
TTGGAGCGGTACCAAATTTCCGCTTGCAAAAGCCACGCAATCTCCGCATT
GGTCTCGATTTCAATGCACTTTTAACCTCTCTGAATGAAACTTTAGATGC
AGCACTTACTTCAAGTTGTACTTTTT Run BLAST on NCBI protein sequence of TCONS_00027670-protein >TCONS_00027670-protein ID=TCONS_00027670-protein|Name=TCONS_00027670-protein|organism=Clytia hemisphaerica|type=polypeptide|length=260bp
KVQLEVSAASKVSFREVKSALKSRPMRRLRGFCKRKFGTAPTILGVHSSR
RAIENLPNTLTLLQQCHQIGSTELQLNALAVGEVLVMRGSDGYPINFIQL
TQAWNIADLKHNTKIVGNFLVAANDDEIGTESVMFFKDPNWEGGSQPFKD
AVLDKDGSIITVSMSLDMSDNTVTYILPRSDYDEIVSLSIEFENSLNRTP
AQPEEETTNEEQDTVEKPVEQNEDEREDDADEEEQQPFVGRRQRRNRGNR
YAGVIASLLQ Run BLAST on NCBI transcript from alignment at sc0000638:189050..189875 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027670 ID=TCONS_00027670|Name=TCONS_00027670|organism=Clytia hemisphaerica|type=transcript|length=826bp|location=Sequence derived from alignment at sc0000638:189050..189875 (Clytia hemisphaerica)
AAAAAGTACAACTTGAAGTAAGTGCTGCATCTAAAGTTTCATTCAGAGAG
GTTAAAAGTGCATTGAAATCGAGACCAATGCGGAGATTGCGTGGCTTTTG
CAAGCGGAAATTTGGTACCGCTCCAACAATTCTAGGTGTTCACTCTTCAC
GCCGTGCCATCGAAAATCTTCCTAACACCTTAACGCTATTGCAACAATGC
CATCAAATAGGAAGTACCGAATTACAGTTGAACGCTTTGGCTGTTGGCGA
GGTGTTAGTGATGAGGGGGTCCGATGGCTACCCCATAAATTTTATCCAGT
TAACGCAGGCGTGGAATATAGCTGATTTAAAACACAATACCAAAATAGTT
GGAAACTTTTTGGTTGCTGCAAATGATGATGAAATCGGTACCGAATCTGT
CATGTTCTTCAAAGATCCAAATTGGGAAGGGGGCAGTCAACCATTCAAAG
ATGCTGTGCTTGATAAAGACGGGAGCATCATCACTGTCAGCATGTCCTTG
GATATGTCTGATAATACCGTCACCTACATCTTGCCAAGAAGCGACTACGA
CGAGATTGTCAGTCTGTCAATTGAATTTGAGAACTCTTTAAACAGAACAC
CTGCGCAGCCTGAAGAAGAAACCACCAATGAAGAACAAGATACCGTCGAA
AAACCAGTCGAACAAAATGAGGACGAACGGGAGGATGATGCCGATGAAGA
GGAACAGCAACCATTTGTTGGAAGAAGACAGAgaagaaatcggggaaaca
gaTATGCTGGTGTGATTGCCAGCTTACTACAATGAAGACTTTTTGTCGCG
TACAGTGAACTAGATGACAACGTCAC Coding sequence (CDS) from alignment at sc0000638:189050..189875 >TCONS_00027670 ID=TCONS_00027670|Name=TCONS_00027670|organism=Clytia hemisphaerica|type=CDS|length=783bp|location=Sequence derived from alignment at sc0000638:189050..189875 (Clytia hemisphaerica)
AAAGTACAACTTGAAGTAAGTGCTGCATCTAAAGTTTCATTCAGAGAGGT
TAAAAGTGCATTGAAATCGAGACCAATGCGGAGATTGCGTGGCTTTTGCA
AGCGGAAATTTGGTACCGCTCCAACAATTCTAGGTGTTCACTCTTCACGC
CGTGCCATCGAAAATCTTCCTAACACCTTAACGCTATTGCAACAATGCCA
TCAAATAGGAAGTACCGAATTACAGTTGAACGCTTTGGCTGTTGGCGAGG
TGTTAGTGATGAGGGGGTCCGATGGCTACCCCATAAATTTTATCCAGTTA
ACGCAGGCGTGGAATATAGCTGATTTAAAACACAATACCAAAATAGTTGG
AAACTTTTTGGTTGCTGCAAATGATGATGAAATCGGTACCGAATCTGTCA
TGTTCTTCAAAGATCCAAATTGGGAAGGGGGCAGTCAACCATTCAAAGAT
GCTGTGCTTGATAAAGACGGGAGCATCATCACTGTCAGCATGTCCTTGGA
TATGTCTGATAATACCGTCACCTACATCTTGCCAAGAAGCGACTACGACG
AGATTGTCAGTCTGTCAATTGAATTTGAGAACTCTTTAAACAGAACACCT
GCGCAGCCTGAAGAAGAAACCACCAATGAAGAACAAGATACCGTCGAAAA
ACCAGTCGAACAAAATGAGGACGAACGGGAGGATGATGCCGATGAAGAGG
AACAGCAACCATTTGTTGGAAGAAGACAGAgaagaaatcggggaaacaga
TATGCTGGTGTGATTGCCAGCTTACTACAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027670-exon-sc0000638-1491911889:189050..189875 | TCONS_00027670-exon-sc0000638-1491911889:189050..189875 | Clytia hemisphaerica | exon |
| TCONS_00027670-exon-sc0000638-1510915933:189050..189875 | TCONS_00027670-exon-sc0000638-1510915933:189050..189875 | Clytia hemisphaerica | exon |
| TCONS_00027670-exon-sc0000638-1575043694:189050..189875 | TCONS_00027670-exon-sc0000638-1575043694:189050..189875 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000638 | supercontig | sc0000638:189050..189875 . |
Blast
The following BLAST results are available for this feature:
|
