TCONS_00027669 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027669
Unique NameTCONS_00027669
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length458

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027669 ID=TCONS_00027669|Name=TCONS_00027669|organism=Clytia hemisphaerica|type=transcript|length=458bp
GGAAATTTAGTTCATACTGTATATACTaccaattttttgcaaaaaaaatc
aaatttcattatttggtataaaaaaaaatttagggaCAACAATATGAATT
TAAGAaacataaaagtttttgaaaaatatattattcTTACAGATAATCCA
CAGTCGTACTTTTGAAGACATAGGTTGTTAACACCCCcgtctcacagacc
cactgggaacccttgggttcgttatttttacccccactggctgaaaaaat
cccaccgggtctgtgagaaggggatggtTGTTATGTGAGTTACAATACAT
GGTATTTTGACCCAACATTTATGTCTCAAGCTCATTGGGTGCCATTTTTT
GCATTAAATCTACAGTATTTCACTAAACATTACAATTGTTTTTGTTATCG
ATGCAAAGATTCAAGGCATGATTCCTTACACGGAAACACCTGCCAAAAAG
CCGAGCGG
Run BLAST on NCBI

transcript from alignment at sc0000638:161650..162107

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027669 ID=TCONS_00027669|Name=TCONS_00027669|organism=Clytia hemisphaerica|type=transcript|length=458bp|location=Sequence derived from alignment at sc0000638:161650..162107 (Clytia hemisphaerica)
CCGCTCGGCTTTTTGGCAGGTGTTTCCGTGTAAGGAATCATGCCTTGAAT
CTTTGCATCGATAACAAAAACAATTGTAATGTTTAGTGAAATACTGTAGA
TTTAATGCAAAAAATGGCACCCAATGAGCTTGAGACATAAATGTTGGGTC
AAAATACCATGTATTGTAACTCACATAACAaccatccccttctcacagac
ccggtgggattttttcagccagtgggggtaaaaataacgaacccaagggt
tcccagtgggtctgtgagacgGGGGTGTTAACAACCTATGTCTTCAAAAG
TACGACTGTGGATTATCTGTAAgaataatatatttttcaaaaacttttat
gttTCTTAAATTCATATTGTTGtccctaaatttttttttataccaaataa
tgaaatttgattttttttgcaaaaaattggtAGTATATACAGTATGAACT
AAATTTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015615XLOC_015615Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027669-exon-sc0000638-1491911889:161650..162107TCONS_00027669-exon-sc0000638-1491911889:161650..162107Clytia hemisphaericaexon
TCONS_00027669-exon-sc0000638-1510915933:161650..162107TCONS_00027669-exon-sc0000638-1510915933:161650..162107Clytia hemisphaericaexon
TCONS_00027669-exon-sc0000638-1575043694:161650..162107TCONS_00027669-exon-sc0000638-1575043694:161650..162107Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000638supercontigsc0000638:161650..162107 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.318025	0.300768	0.00155011	0.505518	1.27919	1.11273	0.371743	0.54021	0.121818	0.162714	0	0.569349	1.40659	0.56331	4.3491	1.72946	0.672773	0.165998	0.0418306	1.22554	0.147532	0.212229	0.508602	0.297046	0.603257	0.509666	1.25047	0.417007	0.561219	0.514607
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027669 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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