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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027644 ID=TCONS_00027644|Name=TCONS_00027644|organism=Clytia hemisphaerica|type=transcript|length=786bp
TGTTCTCACAAAGTCTCTTCTGTTAAATGTGAATAATGTTGGTGAAGTGA
ATAAACAGGGGAAAATTGAAACGacgaaagaaaacaaagaaaccaaaTCA
ACAGATACCGGATCGAtccaacaaaaagaaaacaaagaaaatgatgaaat
tcGGACACCTATATCAGTCGGACATCAAAACCCCATGTTGAAAAATGTCA
AGATCACACCTCCGTTGTGTAACTGCGGACGTCGGTGTAAGCGGAAAAAG
GTTATGAATCCGGGACCAAACATTGACAGGGTGTTTTACTCATGTCCAGA
ATCCCGCGATAGcggatgtaaatatttcaaatgggaagaaaaacttttat
caaGGACGACAATGTCCAAACAGACTTTTACGCCACGTGATCAAAACACA
AAGATACAATTCGAAACGTTGAAAAAGAGATCAGAATTAAAAGATGCGTG
TACGAACTTGTTTAATAcatgaatgttttgttttgttgttgttgtgtcgG
TTAAATTCTGGGGCTTTTGAATTCCTTGTCTATGGGATTGCGTGGATGTT
TTGAGCATTTGAAGATGAAAGTTTTTGTTTCAACTTTATTCGAACCTTCG
TTTTGAAGACATTGAAGGGAAAATGTTCTCCTTAAAGTTATACTTTGAGG
CAACATACGATCTCGCCTCACCATTTTTGgatacaaatttccaaaaataa
ttggttttaaattataaaaattttcatactagggaaacaaaaaactatca
gactgtctttgtgcaaaatttcaagttgtattTCAA Run BLAST on NCBI protein sequence of TCONS_00027644-protein >TCONS_00027644-protein ID=TCONS_00027644-protein|Name=TCONS_00027644-protein|organism=Clytia hemisphaerica|type=polypeptide|length=156bp
VLTKSLLLNVNNVGEVNKQGKIETTKENKETKSTDTGSIQQKENKENDEI
RTPISVGHQNPMLKNVKITPPLCNCGRRCKRKKVMNPGPNIDRVFYSCPE
SRDSGCKYFKWEEKLLSRTTMSKQTFTPRDQNTKIQFETLKKRSELKDAC
TNLFNT Run BLAST on NCBI transcript from alignment at sc0000638:41198..43012+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027644 ID=TCONS_00027644|Name=TCONS_00027644|organism=Clytia hemisphaerica|type=transcript|length=1815bp|location=Sequence derived from alignment at sc0000638:41198..43012+ (Clytia hemisphaerica)
TGTTCTCACAAAGTCTCTTCTGTTAGTAAGTTTTTATCGTTGAAGATCTT
AACTGAAGATCTTAACttccagccccactggaaaataggcaaaaatttcg
tccccgtttGGAAAATACCCCGGAATTTCAGCCCCAATaggaaatttaat
ttgatttcatccccaatcgaaattcaatgtttaaaaatggcacttcaaaa
ccatcccactggaatCTTTtacctttgaacaatagaatttctttccacat
tggaatttcaataggaatttttatccacGCTGAGGAATAagttcaccggg
gctgtgagacagggctgTATCTTAAAAAGCCTCCCCATCGATTTAACTTT
ACTATGAGCCTCATCTTCTTTATGCTATATTGTGCTCTCTAAAAACCTAG
CATTCATATTCCCTGGGGTGCCGTGTATGTGGAAACGGTAAGGGTTGTTT
TTAGTCTctctaaaagtttcaaaaacaacaaaaagttaAAGTAGTCTTCC
TAAGGGTTGGGATATCTCCCTTTTCGCCAGGATGAAGCACTGCCAAAATT
GGAAGTCCACCACTGTAGCCTCTTTCTCTTATAGAGTAACAAATTGTTTT
AGgggcaaacttgctctgtttaggGGTTATCTTTAATGTATGGTGGTCAA
CTGGTGGAGGGTAGGGGTAAGATCTGTTGTCCAGGGGgaggtcaaaattc
acaatgtccgggggtaaatttccaaaaaatgttgtaccctccaccaccac
cacccccccccatattcaaattttttctggaaaagcccatttgcTCATTT
TTTGTCTAGAATGTGAATAATGTTGGTGAAGTGAATAAACAGGGGAAAAT
TGAAACGacgaaagaaaacaaagaaaccaaaTCAACAGGTAATTTTATAC
CAATCAAGTCAAGAAACTATTAACTGATAAGTTTCTaatcattgtattta
aagtcGAATGACCGAAATgtaattcaatttaaaaaactaacttttttaaa
tccCTCCGAACGTAGCTAATAAAACTGTAGTAtaagtggatgccagcagc
agCCTAGCATTGATGATCCTCCTCTTgttcaaataaatcaaaatacaTGC
TAAGACTTATATTGTTATATCAATTTGCTATAGATACCGGATCGAtccaa
caaaaagaaaacaaagaaaatgatgaaattcGGACACCTATATCAGTCGG
ACATCAAAACCCCATGTTGAAAAATGTCAAGATCACACCTCCGTTGTGTA
ACTGCGGACGTCGGTGTAAGCGGAAAAAGGTTATGAATCCGGGACCAAAC
ATTGACAGGGTGTTTTACTCATGTCCAGAATCCCGCGATAGcggatgtaa
atatttcaaatgggaagaaaaacttttatcaaGGACGACAATGTCCAAAC
AGACTTTTACGCCACGTGATCAAAACACAAAGATACAATTCGAAACGTTG
AAAAAGAGATCAGAATTAAAAGATGCGTGTACGAACTTGTTTAATAcatg
aatgttttgttttgttgttgttgtgtcgGTTAAATTCTGGGGCTTTTGAA
TTCCTTGTCTATGGGATTGCGTGGATGTTTTGAGCATTTGAAGATGAAAG
TTTTTGTTTCAACTTTATTCGAACCTTCGTTTTGAAGACATTGAAGGGAA
AATGTTCTCCTTAAAGTTATACTTTGAGGCAACATACGATCTCGCCTCAC
CATTTTTGgatacaaatttccaaaaataattggttttaaattataaaaat
tttcatactagggaaacaaaaaactatcagactgtctttgtgcaaaattt
caagttgtattTCAA Coding sequence (CDS) from alignment at sc0000638:41198..43012+ >TCONS_00027644 ID=TCONS_00027644|Name=TCONS_00027644|organism=Clytia hemisphaerica|type=CDS|length=1413bp|location=Sequence derived from alignment at sc0000638:41198..43012+ (Clytia hemisphaerica)
GTTCTCACAAAGTCTCTTCTGTTAAATGTGAATAATGTTGGTGAAGTGAA
TAAACAGGGGAAAATTGAAACGacgaaagaaaacaaagaaaccaaaTCAA
CAGATACCGGATCGAtccaacaaaaagaaaacaaagaaaatgatgaaatt
cGGACACCTATATCAGTCGGACATCAAAACCCCATGTTGAAAAATGTCAA
GATCACACCTCCGTTGTGTAACTGCGGACGTCGGTGTAAGCGGAAAAAGG
TTATGAATCCGGGACCAAACATTGACAGGGTGTTTTACTCATGTCCAGAA
TCCCGCGATAGcggatgtaaatatttcaaatgggaagaaaaacttttatc
aaGGACGACAATGTCCAAACAGACTTTTACGCCACGTGATCAAAACACAA
AGATACAATTCGAAACGTTGAAAAAGAGATCAGAATTAAAAGATGCGTGT
ACGAACTTGTTTAATAcatgaGTTCTCACAAAGTCTCTTCTGTTAAATGT
GAATAATGTTGGTGAAGTGAATAAACAGGGGAAAATTGAAACGacgaaag
aaaacaaagaaaccaaaTCAACAGATACCGGATCGAtccaacaaaaagaa
aacaaagaaaatgatgaaattcGGACACCTATATCAGTCGGACATCAAAA
CCCCATGTTGAAAAATGTCAAGATCACACCTCCGTTGTGTAACTGCGGAC
GTCGGTGTAAGCGGAAAAAGGTTATGAATCCGGGACCAAACATTGACAGG
GTGTTTTACTCATGTCCAGAATCCCGCGATAGcggatgtaaatatttcaa
atgggaagaaaaacttttatcaaGGACGACAATGTCCAAACAGACTTTTA
CGCCACGTGATCAAAACACAAAGATACAATTCGAAACGTTGAAAAAGAGA
TCAGAATTAAAAGATGCGTGTACGAACTTGTTTAATAcatgaGTTCTCAC
AAAGTCTCTTCTGTTAAATGTGAATAATGTTGGTGAAGTGAATAAACAGG
GGAAAATTGAAACGacgaaagaaaacaaagaaaccaaaTCAACAGATACC
GGATCGAtccaacaaaaagaaaacaaagaaaatgatgaaattcGGACACC
TATATCAGTCGGACATCAAAACCCCATGTTGAAAAATGTCAAGATCACAC
CTCCGTTGTGTAACTGCGGACGTCGGTGTAAGCGGAAAAAGGTTATGAAT
CCGGGACCAAACATTGACAGGGTGTTTTACTCATGTCCAGAATCCCGCGA
TAGcggatgtaaatatttcaaatgggaagaaaaacttttatcaaGGACGA
CAATGTCCAAACAGACTTTTACGCCACGTGATCAAAACACAAAGATACAA
TTCGAAACGTTGAAAAAGAGATCAGAATTAAAAGATGCGTGTACGAACTT
GTTTAATAcatga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027644-exon-sc0000638-1491911889:41198..41222 | TCONS_00027644-exon-sc0000638-1491911889:41198..41222 | Clytia hemisphaerica | exon |
| TCONS_00027644-exon-sc0000638-1510915933:41198..41222 | TCONS_00027644-exon-sc0000638-1510915933:41198..41222 | Clytia hemisphaerica | exon |
| TCONS_00027644-exon-sc0000638-1575043694:41198..41222 | TCONS_00027644-exon-sc0000638-1575043694:41198..41222 | Clytia hemisphaerica | exon |
| TCONS_00027644-exon-sc0000638-1491911889:42007..42085 | TCONS_00027644-exon-sc0000638-1491911889:42007..42085 | Clytia hemisphaerica | exon |
| TCONS_00027644-exon-sc0000638-1510915933:42007..42085 | TCONS_00027644-exon-sc0000638-1510915933:42007..42085 | Clytia hemisphaerica | exon |
| TCONS_00027644-exon-sc0000638-1575043694:42007..42085 | TCONS_00027644-exon-sc0000638-1575043694:42007..42085 | Clytia hemisphaerica | exon |
| TCONS_00027644-exon-sc0000638-1491911889:42331..43012 | TCONS_00027644-exon-sc0000638-1491911889:42331..43012 | Clytia hemisphaerica | exon |
| TCONS_00027644-exon-sc0000638-1510915933:42331..43012 | TCONS_00027644-exon-sc0000638-1510915933:42331..43012 | Clytia hemisphaerica | exon |
| TCONS_00027644-exon-sc0000638-1575043694:42331..43012 | TCONS_00027644-exon-sc0000638-1575043694:42331..43012 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000638 | supercontig | sc0000638:41198..43012 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR010666 | Znf_GRF |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
The following BLAST results are available for this feature:
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