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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027641 ID=TCONS_00027641|Name=TCONS_00027641|organism=Clytia hemisphaerica|type=transcript|length=289bp
aaaacagaacaATCAAATGGTTGAGAAAATGAAGATGCGATAAGATGAGA
ACTTGATATACTTGGAACCATTTGATGGAGGTAAACCTCCTGTGGTTCCA
CACTTAAATTAATAATGGCATTCTCCTCCTCAATCACAACAAAGGAATTA
GCAAGGCGTCTTGGGTTGTTAAAAAGACGTTCCTCTTCAATCTCAAGTAA
CAAAGAAGGTCAGCCATCCAAGAAGAAAAGGCCATTAACAATGCATTGAA
GACTGAATCAAAATccagtttttataaaaagacatCCAA Run BLAST on NCBI transcript from alignment at sc0000638:21389..28300+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027641 ID=TCONS_00027641|Name=TCONS_00027641|organism=Clytia hemisphaerica|type=transcript|length=6912bp|location=Sequence derived from alignment at sc0000638:21389..28300+ (Clytia hemisphaerica)
aaaacagaacaATCAAATGGTTGAGAAAATGAAGATGCGATAAGATGAGA
ACTTGATATACTTGGAACCATTTGATGGAGGTAAACCTCCTGTGGTTCCA
CACTTAAATTAATAATGGCATTCTCCTCCTCAATCACAACAAAGGAATTA
GCAAGGTAAGTAAAAATAGGTAGTGgaggtccaaaaatgaaatttttatg
tttaaccatcttttttaaattagttctcaacttcagttgagctataatct
gacaatgtctgtatgtatgtatgtctgtatgtccgtccgaaccgaaaact
ttggggcagcctggagacttcaaaaaaggtcggatttggctgaaatttgg
cacacttgttccttgggtgaatatctgggggtgtttttttcaNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNctggcacact
tgttccttgggtgaatatctgggggtgtttttttcattctttgaaaattt
tgatttttggggcctggggacgagtttttcaccaaaacgaggctggcagc
ctggacacttcaaaaaaggtcggatttggcNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNtgggggtgtttttttcattttttgaaaattttga
tttttggggcctggggacgagtttttcaccaaaacgaggctggcagcttg
gagactttaaaaacggtctgatttggctgaaatttggcacacttgttcct
tgggtgaatatctaggggtgttttttttattttttgaaaattttgatgtt
tggggcctggggacgagtttttcaccaaaacgaggctggcagcttggaga
ctttaaaaacggtccgatttggctgaaatttggcacacttgttccttgNN
NNNNNNNNNctgggggtgtttttttcattttttgaaaattttgatttttg
gggcctggggacgagtttttcaccaaaacgaggctggcagcttggagact
ttaaaaacggtccgatttggctgaaatttggcacacttgttccttgggtg
aatatctgggggtgtttttttcattttttgaaaattttgatttttggggc
ctggggacgaggaCACTATTCTAACgcacataaaaaatgaaaaaattaag
ataaaaatacccccaggtattcacccaaggaacaagtgtaccaaatttca
gccaaaacggacaaagtatatttgctacctaatactaaatatttgaaatg
ttacaattgggccttctaataacgggaaaatctgaagttgagcccagtgc
ggtgcacacgttcgactatttttcATGTGGATTCCGAATTtggaattttg
gaaattttccatTTTGGACAGTTTCTCATGCTGATTATGAATTTAGGCAG
TATGGCAATaatgattttaaaaatcttttttcggaACTAtggaacatttt
tattccaagaACATAAGCTTCTTTGCTATCTataggattttcattttcaa
actttcaaataccCTTAGGGTTTTAGATTAAGAATGAATTTGGTTATGAA
AAATATACCAAGCTATACCATGAACTCTCTTTCAGGCGTCTTGGGTTGTT
AAAAAGACGTTCCTCTTCAATCTCAAGTAACAAAGAAGGTCAGCCATCCA
AGAAGAAAAGTATGTTGACTTTTTTCACTATGTTCTCTGTATGGAGCTTT
GCCACAACTCGTAACTTCATTTCCCTAATTCAATTTTAAGCacttttttg
ccctttttgcctcataaagttttcttttataaagGTTTTGAGGCTTAgtt
aatttcaatttcagtcACGTCTATTAACTTTCATGCCGTACGCATGAATA
GATGCCACACGTCATTCTCAGACACCCATGTGACTTAGCCGAGCTTTtat
tactgattttgcacaataATCAAAAGgttttaccttaaggaagaaatttt
ggtgggaatttaatttggcgggtggccgaaaaagttttttcagagggtga
aaaattaaatttggcaaaaaggAAGGTTAAGGCCGTTTTCCATTCGGCTC
GAAACTTTTCCGCGCGGAAAACTGACATTAATTTCCATTTTCCGCGCGGA
AAACTTGTatgcttaaaaaccttgaaaagcacttCTTCCTATTCAATTCA
TGAATAGGAAGAAGTATCATAACTCTTTTCTGAATAAGAAAGTGGCTAGA
GTCTAGGTTTTTCTCTATTATGGTAAAGTAAGGTATTTCCATCCCTCTTC
TAGTCTTTCAATAAACTaggttttttcatctttctatCGATTGTTATTGG
TACCAGGTTTTTTCAGTAACTTCAGATTTCGATGAAACCCAGACAAGGGG
GAGTGTTAAAAGCTTGAACCTCCCGAAAGGGGGTTGCCAGTTAGAAGGGG
GTCTTCCTACCTAAAGGTagctctttttgaaaaaggtttgcTTGCGGCAG
TACAAAGTTGTTTTTGCCATGATGGGTCAAAGTCATTGCATTATGTAAAG
GGGTCAGACTAAAACTTCTTTAGAATTTCATAAGGGGGTCTGAATTTTCA
AATGGATTTTTAAGCAGTGGcgtggcgtggtggcagggaGGGGGCAGATG
GGCCAGGTCGATGGGCAAAGCCCCACCAGCGGAGTtcttttgagaagggg
cgccGAAAAATAAGGGGTaccaagaaggatttttcagacGCCCCTGTAGA
AAGATTGgcaattgaaaaacaaaaaatgatgcTCCCtatcacctcaaaaa
ctcaaaattttgttggcttgcttcgctcgcacactctTCTTTGTGTTTAT
GATTTAGGTTTTCTATTATCAAATGAATTTGTAAGCAAATTAAATGTATG
AGAcggggcgccaaaaacaaaaaatctctaaaaagggCGCCAAATTCTAT
TTGGCCAACCCAGAAAAATCTTCCCACCAAGCCACTGTTTTTAGGGGAGG
ATACCAATTGAGGGAGTGGGAGGGGGTCTTCCTGCCTAAGgtggtcttga
cccctctagcaACTGATGTGTCAGTTCATGTTCGATTATGTCTATCAAAT
GTATGACGAGGCTTCCAGCTCAACTAACAAAATAACTTCTATGGCACTAA
TTTCTCTACAACCCGAgacactcaaggtaaacgacctaccaTACACGTGG
CCCTTAAGGGTCCTTTTTCCAAGCtgcccaaagtgcactgtaagggtcaa
aaTGAGCAAAGACGAGAAAAAGTACACTCAAAAGGtgtagaatttagaaa
atttgaccATATTTTGTCTTTAAATGGTcaataattttcaagaaaatgca
ccaaaagggtcgatttttgccaaaatttacacaaatttggctaatttttc
tGCACTATATGGGTTCGACTTTAAAGGCCTTATCTCAGGACGCACGTACT
GCCTTTCCCCGGGCTCAACCAATAACACATTTTTTGCCTGGCTTCATGTC
TTATATAAAAACTGGTTCTGTTAAAAGATGTATAAGTTATATCTGATATC
TACTTGACTTCGAATATTTGTTTTTCACAATGTCTTTTAGTAGTATGTTA
CAAATCTTAGCTGAGAGCCGTGCCAACTGAttatcaaaaaaccttgaaaa
gtacCAAGATctttgccaaaaaaccttgaaaaatgacttaaaaatgaccc
aaaaaaccttgaaaaccttgaaaatcctgaaaaaaaatccgtagacaccc
tgtttTACTACTCTTACTTTTGAGAAAACGTAAACTCCTTCCCAGGGGCA
ATGAAAGAGCAAAGCCAAGATTTTGGATGAGAAGGCTTTTCCAAGAGCGG
GAGAAAAAAGGGCTATACAACATTTTGGTGAAAGATCTAAAAGCTCATGA
CAGTGAATTCTTATTTAAAAGTTTTCGTATGACAATGTCCCCAACTTGAA
CAGTTACATTCATGGATTTCACTctctactttaggcgtacaaactttcgc
gattttaaATGTcttgaaagtaaatgtctttgaaaattcttaacagggca
attcgcgaaagtttatgctcgcgaaaaattctcaaaaaaagggATATCTA
AAAAACCTCCAAATCGTAATAAATACCAAATTTTCTACATATTTTTAtcc
tttaatgcctttttaaagtcgatCGTCTTTATCGGATTtttaaaggggaa
ctcaacaaattttggatttttttgtttctatcctgaaatggtttgtttca
acgataaatttcaaaatttcaaggttgcaACTCTCCTTTCACTCTAAAAA
TTTGTTTAATGAacttttaaaaaaatgctcccctctactaaaatgaaatt
gtttatcaaataaaaaagacgcACTTTCAGCTGTTTTATGACGTAACTGC
ATTCAGAAAGAGGAAGATGCTTATCTTCTCAGGCTAAAAATCAGTGAAGA
CAGGCCCTTCAGTAGAGAGTTTGTGACTAAATTTTTCTGTTTcttgttgg
attttttattgttattcagCTAAATCACCCACAATTTACCAGGAATACTT
TTCTatgtatttatttcttatttaaaacagaACTCTGAAAACNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACGTCATAATCCAAAGAGAA
GTcgatcttttttaaaaagaaagggggcgattttttgaacatatttttaa
ctgaagttaagagagatttttcatgatttttatttgagagATCGAACCTA
Tatactttctttctcatttttatacttaatattaccaaaaatcaggaaaa
aaataaaaatgaaaaatttgttgaGTTGAGTTTTAGGcaattttcattcg
aaaattcttattttcatccaaagattcgcgaaagttaatgcttgcgaaaa
acatttttccttcaaattcgcgaaattaaatgtcgtaaatttcgcgattt
ttcaacctcccgaaagtttctgctcgcaaaagtttgtacgcctaaagtat
tatAAAATCTTCATTAAGACGCTCTGTTGCTGGTACTGAAGAGCGTTTAT
GCATCGGGCTAAGATATATGGTTACCGAAGATGCTCAAGTGTCAATCTTC
GCGAGCTATAGACATAGCAGCCCTCCTACAATTGGTCGAATTATCAAAGA
TGTTCGTAAGGCTATATGGAATGCTTTTAGAGAAAGAAGAATTCTCCTTC
ATCTAAAACTGAATGGCTACACTTTGGAAACAGATGGAATTTTCGTCATT
CATTCGTTCGTCATCATTGAACCTTTGATGGAAAAcggatacaaaaataa
tttctgaAAACGGTATTTATTTTCTACAGAAAATGCTATTTCTTGAAGCA
ATACAGCCTCTTGTCGGGCAACATGCAgcactttttttgaaaagactGGT
GTGAATCTATGACGTGTTCGGCGTACTATCGGCTATCAGCTATTTTTTCT
GGATTCTGTTTCAGAACGTAATAAATCCTGGAATACGTAGAGAAGAGATC
GGATATGAAACTCATTAGgagtgacgtcaatttttaggTCACGTGATTTC
AATAAagattatttgacgtcagataTCTTTTTGAAAAGTGTTTAGAGCTc
agtgttttcaaaaaaagaagccATTTGTATTTTAGTTAGTTAATAGTAGT
AGTTCAGTTCTGATAAGTAAGAAAACGTCAGAAATGGATGTCCTTTCGTT
AGCTTATATTGAGCTTGAAAAAGCAAACGAGCGGATAGAGTTTCTATCTA
AGGAAGCTCAGCgatataaaaataaatgttttttggCAAGCGTTGCCGCA
AACGCCAAAGAACAACAATTAAAAGAATGTCGCCAAGAAAATGTTGCATT
GCATATCAAATTGGCAAAGCAAAAGTAAgtcattgaaaatgtttcattct
cagatataaaagtaaaataaagaaaagcttCTTCCGAGAGGGTGTGATTT
CTCGTCTATTATTTTAGCGTGGTACTGGAAAAAGCGTTTCGTGTATTGTT
CCTAATTTTACCACTATAGCTTACAGATTAATTTTTCTATGTGAGTTTTA
ATTATGGATTATTAACCGAAAAGTCGGTCTCTCTGAGGAAATATTGACCG
AGGGCACGTGTGCCCGAGGTCAATATTTTCCAGAGAGACAGGCTTACTGA
GGTTAATAATCCATTTATAGCCCTGCAAAATAAAGTAataataaagtaat
aaaagtaattaacaagtgtattctattgttctacaTCGTAAAAATTAACA
TTCTAAAGAAGCCAATTTCATAACTGGTCACTATGGGGAAATATTAAACG
GCCACGTGACATCAATTATCCAATCAGTTTTCTCAAAGatgattgacagt
tgtattGCAGGGCTATAAGTTATCATACTGTTTTCTTCGAATTCAACTAT
AGGTGAAGCCTGAGAGTTGATTtcgatcaaaaaattttttcctgtttttt
agGGCCATTAACAATGCATTGAAGACTGAATCAAAATccagtttttataa
aaagacatCCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027641-exon-sc0000638-1491911889:21389..21543 | TCONS_00027641-exon-sc0000638-1491911889:21389..21543 | Clytia hemisphaerica | exon |
| TCONS_00027641-exon-sc0000638-1510915933:21389..21543 | TCONS_00027641-exon-sc0000638-1510915933:21389..21543 | Clytia hemisphaerica | exon |
| TCONS_00027641-exon-sc0000638-1575043694:21389..21543 | TCONS_00027641-exon-sc0000638-1575043694:21389..21543 | Clytia hemisphaerica | exon |
| TCONS_00027641-exon-sc0000638-1491911889:23274..23347 | TCONS_00027641-exon-sc0000638-1491911889:23274..23347 | Clytia hemisphaerica | exon |
| TCONS_00027641-exon-sc0000638-1510915933:23274..23347 | TCONS_00027641-exon-sc0000638-1510915933:23274..23347 | Clytia hemisphaerica | exon |
| TCONS_00027641-exon-sc0000638-1575043694:23274..23347 | TCONS_00027641-exon-sc0000638-1575043694:23274..23347 | Clytia hemisphaerica | exon |
| TCONS_00027641-exon-sc0000638-1491911889:28241..28300 | TCONS_00027641-exon-sc0000638-1491911889:28241..28300 | Clytia hemisphaerica | exon |
| TCONS_00027641-exon-sc0000638-1510915933:28241..28300 | TCONS_00027641-exon-sc0000638-1510915933:28241..28300 | Clytia hemisphaerica | exon |
| TCONS_00027641-exon-sc0000638-1575043694:28241..28300 | TCONS_00027641-exon-sc0000638-1575043694:28241..28300 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000638 | supercontig | sc0000638:21389..28300 + |
Blast
The following BLAST results are available for this feature:
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