TCONS_00027628 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027628
Unique NameTCONS_00027628
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length451

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027628 ID=TCONS_00027628|Name=TCONS_00027628|organism=Clytia hemisphaerica|type=transcript|length=451bp
AAAATATCTTGTCTTTACTTATTTCGAAAGGGCTGTTTTCTGGTCGTCGG
GTCACTGTCGCAGTTCATTGACATTCCCCTACGTAACTTTGGCCgagaaa
ttgagttttttcGAACACTGCATACAATAAGCCTCCAGTTTGTTAATTCT
CTCAGTTCAAGCCTAAAGATCTAAAATCAGCTACTAGTCTATTAGACCAA
GCAATGACTCAGCGTCGCGCCACANCCTGTTTGTTAATTCTCTCAGTTCA
AGCCTAAAGATCTAAAATCAGCTACTAGTCTATTAGACCAAGCAATGACT
CAGCATCGCGCCACCTTTTGGTAGAAAATACGCCATATTGATTTTTTGGT
GCCTTAACATAATAGTATTTATGAAACCAGATGGTTTACGGGCTAAATCG
GTGGTTTTCAGGTTTTACAGGGGGTCTTTTAGGGGTCGATTTTGCTAGCC
T
Run BLAST on NCBI

transcript from alignment at sc0000636:88463..88913

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027628 ID=TCONS_00027628|Name=TCONS_00027628|organism=Clytia hemisphaerica|type=transcript|length=451bp|location=Sequence derived from alignment at sc0000636:88463..88913 (Clytia hemisphaerica)
AGGCTAGCAAAATCGACCCCTAAAAGACCCCCTGTAAAACCTGAAAACCA
CCGATTTAGCCCGTAAACCATCTGGTTTCATAAATACTATTATGTTAAGG
CACCAAAAAATCAATATGGCGTATTTTCTACCAAAAGGTGGCGCGATGCT
GAGTCATTGCTTGGTCTAATAGACTAGTAGCTGATTTTAGATCTTTAGGC
TTGAACTGAGAGAATTAACAAACAGGNTGTGGCGCGACGCTGAGTCATTG
CTTGGTCTAATAGACTAGTAGCTGATTTTAGATCTTTAGGCTTGAACTGA
GAGAATTAACAAACTGGAGGCTTATTGTATGCAGTGTTCgaaaaaactca
atttctcGGCCAAAGTTACGTAGGGGAATGTCAATGAACTGCGACAGTGA
CCCGACGACCAGAAAACAGCCCTTTCGAAATAAGTAAAGACAAGATATTT
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015584XLOC_015584Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027628-exon-sc0000636-1491911889:88463..88913TCONS_00027628-exon-sc0000636-1491911889:88463..88913Clytia hemisphaericaexon
TCONS_00027628-exon-sc0000636-1510915933:88463..88913TCONS_00027628-exon-sc0000636-1510915933:88463..88913Clytia hemisphaericaexon
TCONS_00027628-exon-sc0000636-1575043694:88463..88913TCONS_00027628-exon-sc0000636-1575043694:88463..88913Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000636supercontigsc0000636:88463..88913 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.22525	2.46366	3.26723	2.71362	0.395403	0.156226	0.259042	0.352906	0.175261	0.153023	0	0.0976363	0.0975005	0.303766	0.0832456	0.0893353	0.110054	0.225603	0	0	0.141743	0	0	0.305639	0	0.280952	0.402042	0.42907	0	0.331566
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027628 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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