TCONS_00027626 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027626
Unique NameTCONS_00027626
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length791

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027626 ID=TCONS_00027626|Name=TCONS_00027626|organism=Clytia hemisphaerica|type=transcript|length=791bp
TGAGTAGTAGTGTGATTGTCTATTGTGAAAGTCATTGGTAGCCAGCCAGA
ACAATGTAATGTGGATCCGCCAACGGCTCGAACTAGTTTGTTGCATGGGG
TCAATGATTGTTTGTTTAGTTTGAGTTTATTCAAATGTTGGGGTCCACCT
AAACAAATGCTAGCTCCACTATCAGGAAAGATTTTCATTGACGTTGGTGT
CGGTTTGGTCGTATTGGAGGTTGGCGTAAGTTTCGCGTTTATTTCAGTGA
TCTCTGCGGTTGGGCGGAACGCTTTGCTTTTTTCGTCATAGGTGACATGG
GCCAATAGTGCTTCGGCTGTTTCTGATTTTGGTTTCCGACACACTTTcga
aaaatgatttgataatTTGCAATTGTGGCATGTCTTCCCCCATGCTGGAC
ACTTGGATGACCGATCTTTTGATCCGTGGGAAAGGCTGCCACAACCGGAA
CACGGAGCTTGTCTGGTTGGAAGCTTTTGGCGTTGATATTGTGATGTTCG
GACCGCCATTGCATCGGATGCATCTTGTAAGCTGGCATGATCTTGGAGGG
CCGTTTCGAAGGCTTCTGCATGCTTGACGACATCTTCCATACTGTTGAGG
GTGGTGGCCTTAGCAAGAATGTCGACCTGTAGAACCTCGTTATGTAAGCC
CCGGATCAATTGGTCTCTGATGTACGAAGGTGATAGATCATGATGACATT
GCGGACATGAAAATTCGCAGTCTTGTGCTGACGACTTTAAACGAACTAAA
TAGTCCCTTAGTTGTTCATTTTAGTTGTTTCATGCTGCAAT
Run BLAST on NCBI

protein sequence of TCONS_00027626-protein

>TCONS_00027626-protein ID=TCONS_00027626-protein|Name=TCONS_00027626-protein|organism=Clytia hemisphaerica|type=polypeptide|length=196bp
MEDVVKHAEAFETALQDHASLQDASDAMAVRTSQYQRQKLPTRQAPCSGC
GSLSHGSKDRSSKCPAWGKTCHNCKLSNHFSKVCRKPKSETAEALLAHVT
YDEKSKAFRPTAEITEINAKLTPTSNTTKPTPTSMKIFPDSGASICLGGP
QHLNKLKLNKQSLTPCNKLVRAVGGSTLHCSGWLPMTFTIDNHTTT
Run BLAST on NCBI

transcript from alignment at sc0000636:66713..67503

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027626 ID=TCONS_00027626|Name=TCONS_00027626|organism=Clytia hemisphaerica|type=transcript|length=791bp|location=Sequence derived from alignment at sc0000636:66713..67503 (Clytia hemisphaerica)
ATTGCAGCATGAAACAACTAAAATGAACAACTAAGGGACTATTTAGTTCG
TTTAAAGTCGTCAGCACAAGACTGCGAATTTTCATGTCCGCAATGTCATC
ATGATCTATCACCTTCGTACATCAGAGACCAATTGATCCGGGGCTTACAT
AACGAGGTTCTACAGGTCGACATTCTTGCTAAGGCCACCACCCTCAACAG
TATGGAAGATGTCGTCAAGCATGCAGAAGCCTTCGAAACGGCCCTCCAAG
ATCATGCCAGCTTACAAGATGCATCCGATGCAATGGCGGTCCGAACATCA
CAATATCAACGCCAAAAGCTTCCAACCAGACAAGCTCCGTGTTCCGGTTG
TGGCAGCCTTTCCCACGGATCAAAAGATCGGTCATCCAAGTGTCCAGCAT
GGGGGAAGACATGCCACAATTGCAAattatcaaatcatttttcgAAAGTG
TGTCGGAAACCAAAATCAGAAACAGCCGAAGCACTATTGGCCCATGTCAC
CTATGACGAAAAAAGCAAAGCGTTCCGCCCAACCGCAGAGATCACTGAAA
TAAACGCGAAACTTACGCCAACCTCCAATACGACCAAACCGACACCAACG
TCAATGAAAATCTTTCCTGATAGTGGAGCTAGCATTTGTTTAGGTGGACC
CCAACATTTGAATAAACTCAAACTAAACAAACAATCATTGACCCCATGCA
ACAAACTAGTTCGAGCCGTTGGCGGATCCACATTACATTGTTCTGGCTGG
CTACCAATGACTTTCACAATAGACAATCACACTACTACTCA

Coding sequence (CDS) from alignment at sc0000636:66713..67503

>TCONS_00027626 ID=TCONS_00027626|Name=TCONS_00027626|organism=Clytia hemisphaerica|type=CDS|length=588bp|location=Sequence derived from alignment at sc0000636:66713..67503 (Clytia hemisphaerica)
ATGGAAGATGTCGTCAAGCATGCAGAAGCCTTCGAAACGGCCCTCCAAGA
TCATGCCAGCTTACAAGATGCATCCGATGCAATGGCGGTCCGAACATCAC
AATATCAACGCCAAAAGCTTCCAACCAGACAAGCTCCGTGTTCCGGTTGT
GGCAGCCTTTCCCACGGATCAAAAGATCGGTCATCCAAGTGTCCAGCATG
GGGGAAGACATGCCACAATTGCAAattatcaaatcatttttcgAAAGTGT
GTCGGAAACCAAAATCAGAAACAGCCGAAGCACTATTGGCCCATGTCACC
TATGACGAAAAAAGCAAAGCGTTCCGCCCAACCGCAGAGATCACTGAAAT
AAACGCGAAACTTACGCCAACCTCCAATACGACCAAACCGACACCAACGT
CAATGAAAATCTTTCCTGATAGTGGAGCTAGCATTTGTTTAGGTGGACCC
CAACATTTGAATAAACTCAAACTAAACAAACAATCATTGACCCCATGCAA
CAAACTAGTTCGAGCCGTTGGCGGATCCACATTACATTGTTCTGGCTGGC
TACCAATGACTTTCACAATAGACAATCACACTACTACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015582XLOC_015582Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027626-proteinTCONS_00027626-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027626-exon-sc0000636-1491911889:66713..67503TCONS_00027626-exon-sc0000636-1491911889:66713..67503Clytia hemisphaericaexon
TCONS_00027626-exon-sc0000636-1510915933:66713..67503TCONS_00027626-exon-sc0000636-1510915933:66713..67503Clytia hemisphaericaexon
TCONS_00027626-exon-sc0000636-1575043694:66713..67503TCONS_00027626-exon-sc0000636-1575043694:66713..67503Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000636supercontigsc0000636:66713..67503 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.18229	1.0401	2.55951	2.1546	2.88861	1.9989	1.34414	2.36563	1.32893	3.05894	0.507786	0.94034	0.605438	0.889536	0.312996	0.450469	0.468566	0.551312	0.1296	0.509639	0.303913	0.221199	0.196006	0.0713745	0.392689	0.559419	0.36104	0.494188	0.372885	0.275334
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR021109Peptidase_aspartic_dom
IPR001878Znf_CCHC
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027626 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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