TCONS_00027624 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027624
Unique NameTCONS_00027624
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length560

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027624 ID=TCONS_00027624|Name=TCONS_00027624|organism=Clytia hemisphaerica|type=transcript|length=560bp
NTTATGCAGCATCACAATCTATCTTACGAGAAAAATCTTAAACGATAAtc
tggtaattgtttgaaaattttgtgtttttactATCAGGATCGAAAACCAT
TCAGTTCAACAACCATCTATTTGAACTGCAAACCATTCAATTTAAGCAGG
TCAGTTTTCCATCTATTGAGACTGCAAACTGTTCAGTTCAAAACCGTTCA
GTTTTCACCCTATTTGGACTGCAAACCATCCAGTTCAAAACGGTCAGTTT
TCATCTAATTGGACTGCAAACCACTCAGTTCAAACCATTCAGTTTTCATC
TAATTGGACTGCAAACCATCCAGTTCAAACCATTCAGTGCTTATCTAATT
GGACTGCAAACCACTCAGTTCAAACCATTCAGTTTTCATCTAATTGGACT
GCAAACCATCCAGTTCAAAACTGTTCAGTTTTCCTTCTGTGAACCATCTA
GTTCAAAACTGTTCAGTTTTCCTTCTGTGAACCATCTAGTTCAAACCGGT
CATTTTCCATCTATTTTTACTGCAAACCATCTAGTTCAATCCAGTCAGTT
TTTCATCTGT
Run BLAST on NCBI

transcript from alignment at sc0000636:28354..28913

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027624 ID=TCONS_00027624|Name=TCONS_00027624|organism=Clytia hemisphaerica|type=transcript|length=560bp|location=Sequence derived from alignment at sc0000636:28354..28913 (Clytia hemisphaerica)
ACAGATGAAAAACTGACTGGATTGAACTAGATGGTTTGCAGTAAAAATAG
ATGGAAAATGACCGGTTTGAACTAGATGGTTCACAGAAGGAAAACTGAAC
AGTTTTGAACTAGATGGTTCACAGAAGGAAAACTGAACAGTTTTGAACTG
GATGGTTTGCAGTCCAATTAGATGAAAACTGAATGGTTTGAACTGAGTGG
TTTGCAGTCCAATTAGATAAGCACTGAATGGTTTGAACTGGATGGTTTGC
AGTCCAATTAGATGAAAACTGAATGGTTTGAACTGAGTGGTTTGCAGTCC
AATTAGATGAAAACTGACCGTTTTGAACTGGATGGTTTGCAGTCCAAATA
GGGTGAAAACTGAACGGTTTTGAACTGAACAGTTTGCAGTCTCAATAGAT
GGAAAACTGACCTGCTTAAATTGAATGGTTTGCAGTTCAAATAGATGGTT
GTTGAACTGAATGGTTTTCGATCCTGATagtaaaaacacaaaattttcaa
acaattaccagaTTATCGTTTAAGATTTTTCTCGTAAGATAGATTGTGAT
GCTGCATAAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015580XLOC_015580Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027624-exon-sc0000636-1491911889:28354..28913TCONS_00027624-exon-sc0000636-1491911889:28354..28913Clytia hemisphaericaexon
TCONS_00027624-exon-sc0000636-1510915933:28354..28913TCONS_00027624-exon-sc0000636-1510915933:28354..28913Clytia hemisphaericaexon
TCONS_00027624-exon-sc0000636-1575043694:28354..28913TCONS_00027624-exon-sc0000636-1575043694:28354..28913Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000636supercontigsc0000636:28354..28913 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.25832	6.18596	3.47977	1.96154	0.906693	0.336885	1.15082	1.01537	0.576004	0.316509	1.49096	0.551246	0.56326	0.94075	0.548685	0.697553	0.736649	0.233316	0.117874	0.112435	0.408252	0.143002	0.879597	0.694018	2.05572	3.3308	0.314391	0	1.80156	1.33621
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027624 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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