TCONS_00027618 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027618
Unique NameTCONS_00027618
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2327

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027618 ID=TCONS_00027618|Name=TCONS_00027618|organism=Clytia hemisphaerica|type=transcript|length=2327bp
ttttaaaaagattttaatgaTGAGTTTGAATGTTTTACCGACcgaacttt
tgaaaatggtgatATCGTATCTCGGTAAAAGAGACGCCAAAAGTTTAGCT
GTTACTTCAAAAAGAAtgtatatttttcataaaattaaaGTGCtctaaat
atcttttcaacgattttaaaaacagTTTAATGATGAGTTTGAATGTTTTA
CCAaccgaaattttgaaaatggtgaTATCGTATCTTGGTAAAAGAGACGC
CAAAAGCTTGGCTGTTGCTTCAAGAAAATTGCGTGAAATAGCGTTGGAAA
AGATATGGTCAAAACCGATCTACCAGAAATCGAAAGGATTGAGGTTTTTG
AAGATGATTTCGCGTTTCCCGATTGATCAAATTCGTGTCAAAGATTTTCG
ATGCAAGATGGAGGAAGTCATTGAAACCGTATCATCTTTAAAACGTTTGA
ACTTAGATTTGAGTTCTAAGTGTGTCTTTAGGACTCCTTTGGACTTGATA
CGTTTCAAATTCCCAATAGTCGCTCATACCAAGGCTTTGAAGATTGACTC
GGAGAGTAAATTTGGTCTGCTTCTTGTTGCCCTGGAGACTGGGTTTGTTA
AGGAATTAATTGTCGATCATCACAGTAAAAATCTTCGTTGGTCACCTGAG
CTCCTTAAAATGCTGGTCAGTAAAGTATACATTTCAGAAATCTCAGTCAA
TGCTCTCCGATTCACGGATGAGAATGTTGAGGAATTTTGTCAGATTTTCT
TATCTCTCAGAAACTGTCAGGTATTTTTTCCTGAAGAAAAAGCATGGGAA
CAAGACCGAATAGATGAGGAAGATTTGACACCGTCAAGGttagtaaaatc
gaaaaaagatCGCACTAAAAACAAATTTACTATCAATGATATCGAAACAT
TTGCAAGATATGATGTTAAGATTTCTTCCATGGCAGGTAGCAATAACATG
TTAAACTTGGATTTGAAGTACAATAAAGACATTTCAAAGCTATTGAAATT
TGTACCAGTTCTGAAACGGTTGCAATATTTACAATCTTTTAAACTGCGAG
AAGATGGAGAACCATTTAAATGGGATCTCTCAAAATTTGACCAATTGTCT
GACTTGCCCATCCGTAGAATCAGAACAAATATGTTAATCATCAGTAAAGA
GAATGTTGGCAACATCGTGGACACACTCTCCAAGATGAAATCATTGCAGC
ATCTACATATTCTATGGAATCGCTTTAAATTGACACCGGAAGAATTTGCA
CTTTTTCAAACCCTACCTGTAAAGATTGTTAATTTGACAGCTTTGGATTT
GATGAAAGAAAATGTCCCGAAATTTCGACAAATAATGAATgagatgaaaa
ttgaaaaaatcaactcCTCATTGCCAGTGAAAAAGAGGAATAAATTAGGA
ATTCGGTTCCGTCAATTTGGACCTGGTGCGATGTTTTGGTCCATTTAAGC
GAGGGATCAATAAAGTTTTGTTATTTTGAGAGTCGGTCTCTTGTTGTCTG
GGTAGTCTATactccattgagtttcaagcccgaagggctagaggcaaaac
tttaacccttctcaggcaagagaaattgaagtcacttatttcccatccaa
aacacgcatagaacgcgccgtaatcacgacgacggattgtatctagcggt
tcctttgttttggaggactacatatttaaaatctagcgatagattttagt
ttcagcccggtgtttgtgtaaaaacttcgcgtgggcgttctggatgggaa
ataggtggttttatttcccatccaggagtttcgcctctagcccttcgggc
ttgaaactcaatggtataCCCCATCCACTTAATaagtaaaatcttttttc
aactATCAAAAACTACAGTATAAAAGCACCGTTATCCGGATGATACTGTG
CGTGGGCTAAAATTCTTGAAATCAATGaaacaaaaggaaaaaagactttt
tgttGTTCTGAGTCAGCGCTTTGGGAATCTGCGATAGCAGATTTATAAAC
TAGATGTGTGAAAAATCATTACCCAGATGATGTCTTTGGATTTGGTCGTG
TTTGTCATCTTTGTAAATACATTCGTGTTTTTGTACTTATTtattaaaat
gaagaaatgCTTATGAAGCGTAATGTTTTCTCAAGGACacttgtacaggg
tgtccctaattaaagtatcgagtttgaacatgcgattgagtagaaaagtt
tgtgtgtgtgttatcgctaaaatataagaacgttctccatcacacaggtt
tattacaaaaggtagttacaatgtataaattaatcgtaatgacaaagaaa
aaagagggagagcttaaaatacaattt
Run BLAST on NCBI

transcript from alignment at sc0000636:183882..186655-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027618 ID=TCONS_00027618|Name=TCONS_00027618|organism=Clytia hemisphaerica|type=transcript|length=2774bp|location=Sequence derived from alignment at sc0000636:183882..186655- (Clytia hemisphaerica)
TTTTAAAAAGATTTTAATGATGAGTTTGAATGTTTTACCGACCGAACTTT
TGAAAATGGTGATATCGTATCTCGGTAAAAGAGACGCCAAAAGTTTAGCT
GTTACTTCAAAAAGAATGTATATTTTTCATAAAATTAAAGTGCTCTAAAT
ATCTTTTCAACGGTACGTAAAATGTTCCAATTGAAGCATTTGTTGGAAAA
CGGCAAGCAAAACAAAGTGTATGGACTTAACTATATAAAAATTAATTTTT
AAATATTGCAAGATTTTTAAATATTGCATGATCTTGTATCAAAACTTCTG
TCAGTCTTGGACTTAGCGTCATTTTGACGGTTGTCGTGGGAAAAATCTAT
TATGCGAGGGGCCCCTAGTTCTCCCAGCTGTCCAAACACGTATGTAAATT
TGAGTCTTCTGTCGACAAGTAGAAATGCCCTGTTTTCTTAGAAAGCTGAT
GAAATCAAAAGTTTTCAAATTGTGCCAAATTATTGTTTGGCCCCTTTTGT
ATCTTGAAATTAAGTTTTCATAGAATATTATTATAAAGCTCTCATATATG
GGTTATCTATTTTGATCTTGGAATTTCTTCTTCATTTTTTTTTTTTTTTT
TCGTTTCAGATTTTAAAAACAGTTTAATGATGAGTTTGAATGTTTTACCA
ACCGAAATTTTGAAAATGGTGATATCGTATCTTGGTAAAAGAGACGCCAA
AAGCTTGGCTGTTGCTTCAAGAAAATTGCGTGAAATAGCGTTGGAAAAGA
TATGGTCAAAACCGATCTACCAGAAATCGAAAGGATTGAGGTTTTTGAAG
ATGATTTCGCGTTTCCCGATTGATCAAATTCGTGTCAAAGATTTTCGATG
CAAGATGGAGGAAGTCATTGAAACCGTATCATCTTTAAAACGTTTGAACT
TAGATTTGAGTTCTAAGTGTGTCTTTAGGACTCCTTTGGACTTGATACGT
TTCAAATTCCCAATAGTCGCTCATACCAAGGCTTTGAAGATTGACTCGGA
GAGTAAATTTGGTCTGCTTCTTGTTGCCCTGGAGACTGGGTTTGTTAAGG
AATTAATTGTCGATCATCACAGTAAAAATCTTCGTTGGTCACCTGAGCTC
CTTAAAATGCTGGTCAGTAAAGTATACATTTCAGAAATCTCAGTCAATGC
TCTCCGATTCACGGATGAGAATGTTGAGGAATTTTGTCAGATTTTCTTAT
CTCTCAGAAACTGTCAGGTATTTTTTCCTGAAGAAAAAGCATGGGAACAA
GACCGAATAGATGAGGAAGATTTGACACCGTCAAGGTTAGTAAAATCGAA
AAAAGATCGCACTAAAAACAAATTTACTATCAATGATATCGAAACATTTG
CAAGATATGATGTTAAGATTTCTTCCATGGCAGGTAGCAATAACATGTTA
AACTTGGATTTGAAGTACAATAAAGACATTTCAAAGCTATTGAAATTTGT
ACCAGTTCTGAAACGGTTGCAATATTTACAATCTTTTAAACTGCGAGAAG
ATGGAGAACCATTTAAATGGGATCTCTCAAAATTTGACCAATTGTCTGAC
TTGCCCATCCGTAGAATCAGAACAAATATGTTAATCATCAGTAAAGAGAA
TGTTGGCAACATCGTGGACACACTCTCCAAGATGAAATCATTGCAGCATC
TACATATTCTATGGAATCGCTTTAAATTGACACCGGAAGAATTTGCACTT
TTTCAAACCCTACCTGTAAAGATTGTTAATTTGACAGCTTTGGATTTGAT
GAAAGAAAATGTCCCGAAATTTCGACAAATAATGAATGAGATGAAAATTG
AAAAAATCAACTCCTCATTGCCAGTGAAAAAGAGGAATAAATTAGGAATT
CGGTTCCGTCAATTTGGACCTGGTGCGATGTTTTGGTCCATTTAAGCGAG
GGATCAATAAAGTTTTGTTATTTTGAGAGTCGGTCTCTTGTTGTCTGGGT
AGTCTATACTCCATTGAGTTTCAAGCCCGAAGGGCTAGAGGCAAAACTTT
AACCCTTCTCAGGCAAGAGAAATTGAAGTCACTTATTTCCCATCCAAAAC
ACGCATAGAACGCGCCGTAATCACGACGACGGATTGTATCTAGCGGTTCC
TTTGTTTTGGAGGACTACATATTTAAAATCTAGCGATAGATTTTAGTTTC
AGCCCGGTGTTTGTGTAAAAACTTCGCGTGGGCGTTCTGGATGGGAAATA
GGTGGTTTTATTTCCCATCCAGGAGTTTCGCCTCTAGCCCTTCGGGCTTG
AAACTCAATGGTATACCCCATCCACTTAATAAGTAAAATCTTTTTTCAAC
TATCAAAAACTACAGTATAAAAGCACCGTTATCCGGATGATACTGTGCGT
GGGCTAAAATTCTTGAAATCAATGAAACAAAAGGAAAAAAGACTTTTTGT
TGTTCTGAGTCAGCGCTTTGGGAATCTGCGATAGCAGATTTATAAACTAG
ATGTGTGAAAAATCATTACCCAGATGATGTCTTTGGATTTGGTCGTGTTT
GTCATCTTTGTAAATACATTCGTGTTTTTGTACTTATTTATTAAAATGAA
GAAATGCTTATGAAGCGTAATGTTTTCTCAAGGACACTTGTACAGGGTGT
CCCTAATTAAAGTATCGAGTTTGAACATGCGATTGAGTAGAAAAGTTTGT
GTGTGTGTTATCGCTAAAATATAAGAACGTTCTCCATCACACAGGTTTAT
TACAAAAGGTAGTTACAATGTATAAATTAATCGTAATGACAAAGAAAAAA
GAGGGAGAGCTTAAAATACAATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015577XLOC_015577Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027618-exon-sc0000636-1575043694:186494..186655TCONS_00027618-exon-sc0000636-1575043694:186494..186655Clytia hemisphaericaexon
TCONS_00027618-exon-sc0000636-1575043694:183882..186046TCONS_00027618-exon-sc0000636-1575043694:183882..186046Clytia hemisphaericaexon
TCONS_00027618-exon-sc0000636-1510915933:186494..186655TCONS_00027618-exon-sc0000636-1510915933:186494..186655Clytia hemisphaericaexon
TCONS_00027618-exon-sc0000636-1510915933:183882..186046TCONS_00027618-exon-sc0000636-1510915933:183882..186046Clytia hemisphaericaexon
TCONS_00027618-exon-sc0000636-1491911889:186494..186655TCONS_00027618-exon-sc0000636-1491911889:186494..186655Clytia hemisphaericaexon
TCONS_00027618-exon-sc0000636-1491911889:183882..186046TCONS_00027618-exon-sc0000636-1491911889:183882..186046Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000636supercontigsc0000636:183882..186655 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.970931	1.37476	1.52542	1.19421	0	0	0	0	0	0	0	0	0.448009	0	0	0	0	0	0	0	0	0	0	0.847418	0.0079472	0	0	0	0.249225	0.626747
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027618 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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