TCONS_00027613 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027613
Unique NameTCONS_00027613
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1741

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027613 ID=TCONS_00027613|Name=TCONS_00027613|organism=Clytia hemisphaerica|type=transcript|length=1741bp
GTAGATTTGCTCATCAAAACGGGGCGACAGCTAAGCTGTGTTTTGAACTT
TATAAAGCACTTCAGTTTCTCTCAGTCAGCGAAAGAGTAACGACTGTCTG
AACTCgaattttataatattttcttttttatacatTATTGAAATTTCGAA
ATGGGTGATGATGGTAAATCCAACAAGCCTTTCAAGCAAAGGAAAAGCTT
TGGAAGCAGAAGAGATGAAGTAGCAGGAATCCGAGCGAAATTTCCCTCCA
AAATACCTGTCATTGTTGAAAGATACCACAAAGAAAAATCACTTCCAATG
TTAGATAAAACGAAATTTTTAGTACCTCAAGAATTAACAATGAGCCAATT
TGTCACAATTATTAGAAATCGTATGTCATTGGCACCAACCCAATCCTTCT
ACCTGATCGTCAATAACAAAAGTTTAGCAAGTATGTCGACAACTTTACAA
GAAGTTTATAAGGATGAAAAAGACGAGGATGGATTTTTATACATGACTTA
TGCATCACAAGAAATGTTTGGATGTTAATATTGAAACTTTGATTGGAATG
CCATTTACACCAGAACAATTTTATGTTGGAATGGCACTCCTTTCAAACAA
CGAAACACAACATTGATATTTTTAACTTGCATTCATGGTGTTGGTTTGAA
ATATCAtcaattatatttttcatggtTGGAATATTAGACTGTGGTATTCT
TGCCATGTAGAATTGACTCTTCGCATATACGAGCTGAAGCATTGCTGGAT
AGaagctttttcattttctttcatttggGTATACGaaataaattgagaaa
aaagttacaacagaaaaaatatttataatttaatttatagtttttttaaA
ATCATATGACAACAGTAGTTCTAATTTgagattgatatttttaaaaataa
atgtcACCCGTTGTTTGTTGGCTGAATTTGTACTCAGATGATGAAATTAG
TTAACGTGTTTACAAATTTGAACTCGAAAAAGCCAATAATTTGTTTGACT
CACGGAAAAGTTCCATTGAGGACTTTTCAAACATGCATTCAATCGATTCA
tcacaaattcaatttttgttagctttgtttacattttgcacTGATTCAGC
TTTCAAACTGGAACTTTCATACCTCTTATGATACGCAACATATTCACACC
TTGTTGGCAATCAATCTATAATGCCGACGCAATCTTCTTTTTTacgatat
tttgaatttttaactcacTTTTGCCCTTAAAACTATAGAAATGTACCATT
TTTTTGTCTACAAATATTTTTGTATCGTATTTTTAAtattaacatttttt
tctttgtagttcttttggtgttttttgtCTAAATGTACGCGTGCTCAGTG
AAAATTCTTTCCAAACCTTGTCTGAAGGACAGTAACTAAATACTTTTGAG
TTGATTTCTGAATGCATTCCTTTTTTGTAAATCTCACGGAAGAAGGAGGT
CACTGGTCAAACGATTCAAATCGTTCTTTGTTATATAACTATATGACTAT
CACCAATAAGTTCATTGCTTCTTTTAAGATTCAAGtgataaattaaatta
aatagcGGTTCTTGTGCTCGTTGAAAGGGTTTTCACGAGTGGAATATTCT
ATcccaaaataatttgaaaaatgaagagaaaaacTCAGCTTCATGAAGAA
CCgtgctataattatcattttcgcacacgtgattctttgatcttataaca
tcagaatgaaaaaaaaatcgaaaatacttaTTCAATCGGAA
Run BLAST on NCBI

transcript from alignment at sc0000636:137889..148912-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027613 ID=TCONS_00027613|Name=TCONS_00027613|organism=Clytia hemisphaerica|type=transcript|length=11024bp|location=Sequence derived from alignment at sc0000636:137889..148912- (Clytia hemisphaerica)
GTAGATTTGCTCATCAAAACGGGGCGACAGCTAAGCTGTGTTTTGAACTT
TATAAAGCACTTCAGTTTCTCTCAGTCAGCGAAAGAGTAACGACTGTCTG
AACTCGAATTTTATAATATTTTCTTTTTTATACATTATTGAAATTTCGAA
ATGGGTGATGATGGTAAATCCAACAAGCCTTTCAAGCAAAGGAAAAGCTT
TGGTAAGTTTTGTGCAACGTCTCTTTCTTGGCAGTAGTTTTCTGTAGCTA
GCGTTTTATTTTCCCATCATTTTCATTTGTAAACTTTTCCTTTAAATACC
TTGGCTATCTCCCTTTTACTTTTGAAAAAGTGTTTCATTTACTTGTTCTA
TGTTAGATTTTCGATTTAGTAGCTAACGTTTTTCAGAGCTTTGTGTTTAC
CGTGGTGACTGGATGAAAGGAGGGGGTGTGGCATCATGCATGTTCCCACA
CAAACCAAGACAAACAGCCCTGTTGATGATGTTGTCTGCCCTCTCGAATT
ACCATCATTTTGGCTATAAAAATTCCACTTCCTGGATCATTTTCCACTGC
CCATTTCTAGTGATAAAAAGCCAGGACTTTATGTAGTTGGGAAATCTGGG
GAGGGGGTACTAGGGTTGCGAGCTGACGGGGGCGGGGGGGGGCCGCCCGA
CTTTCGAACTTTGGACCCTTACCAGGACTAAAAAGGAGAAAACAAAGGAA
AATTTTGGGAATTTTACGACCCTTAGCGGGACTTATTTGACCAATTTTGA
ACAAATTTAGATTTTTCAGGGGGTAAAAAGTTGAAATTTTCCTATTTTTC
CGACCCTTAGCGGGACTTTGGAAGTCCAAAAAAGGNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNCCCCCCATTTGCCTAAGTCCCCCCCCCCCCCGAGTG
GGAAATAAACAAGCTTCAGAAATTTAGCCAACATTCATAACTAAACATAA
CTCATAACTCAAGCCTGATATAAGCATCTTACATTATTTGGCTGGCTATC
CCAGAAAAAAAACATGAGATGAATCCCAAAATCATACTCTGGGAGGTGAA
AGTGAAAGTGTCATACCCAGGGCAAGAGTCTCAAAACACATATACATGTT
TGGGGGAGCGGAGAACGCATCAGCCTATGTACTCATTTCTGCATATTAAA
CTGACAGCCATTTGGTCTGGAAATTATCTGCTCCCTATTATGGAAACAAA
ACCCTGATACTTTATAGCATGTCGTGCTGGAAGATTCTCAACCAGATTCT
CAGCGTTATCTTGCAATAATTTGGGAGAATGTTAGTATGCCAATTTCTTT
CCCGCTGGTTTTACTTGTATCCACTGAAGTAAAGAGTTAAGTTAGTTTTT
AGCCTGTTAGCCTCACAAGTCAAAGTTTTTCATCCAACTAAAAAAGTATT
TTTCCTTTTACTGTAAAGGCTTTTTCATGTTAAAATTGTCATTTTGTTTG
TCTTGATTGTTATAAAGTTCCTACTTGCAAGAAATTTTTTTCCTTGAATT
TTGAAAAAATATGTCGTAAGGCAAAAATAAAAAAATGTACTGTTTCCAGA
AACCGGCCGGGTGAAAAAGAAATTTTTCTGACCTGGCTGCAGACATATAC
ACTATAAATATGGTTCATAATAAAAAAATCAAGTTGACCGTTCAAGCTAT
CAAACGTTGTTTGGTTAGATATACCCGCTTGTAAATCAAGTTTTGTTCTA
GTTCTAGTTGATACATTAGTATTCAGGGCTTACTTCATTCATACTGTTTG
TACATAAAAGTTTTTCTGGCCGGCGACATCAGAGCTTTTTTCCTTCACCC
GCATTCCGGAAACACTGCATTTTTTTATTTGCCTAAACTCCAAGATTTTT
TTGACCTTGCAAAGCTTTGTGCTCACAAAAGTTTGACCGTCTAAAGAAGC
ACAATATACTTTGCTTCCAATTCTACCAATTTCGTTTGTTTGAATATAAA
ACTGAATTATAGACAATAAGATAGTAGACTTTGTAGTGACAGAATCTAGT
CCAACCAATCCATGTGCATCATTGATTGTCTTCAAAAAGCAAATTATTTA
ATGCAAGTCAATCTCAAGAAAAAGACTTTGGTGGCCCCCGGGCTAAGGAA
AAACAGGCTTTAAAAGTCTTCTAGAAAAGTGTGAAATTAATTTTTCACAT
TGATTTATAACATGTGATTTACATTTATAATATGTGACACATTTATAACA
GTGATTGAGCACTTATCAATATTTAAAGAAAATGATTGTTCTGGCCATGA
ACACTGTACCTTGAGGTCAAAACGGTTCTAAATTTGCCTTCATAGAAAAT
GTGGAAATGCAATGCACAATAGGCTGGTGCAGACTAAGCTTTGTTGAATG
TTTATGTTGTTATTTGTCTTGGTTAAGTTTTATGATGATTTTTACAGTGT
TTTTCTTATATCTTAGGAAGCAGAAGAGATGAAGTAGCAGGAATCCGAGC
GAAATTTCCCTCCAAAATACCTGTAAGGGCTTATTGTTATATGTCATTGT
TTTTATATTTTTATTAAAACCATGGACAGTGTTTTTTGTGAATGTATGTA
TTAGCTCCTGATGAACAATGATGGCTATTTTCTTGTTTTGGCTTGATTTT
TTGATATCATTTTTAGGTCATTGTTGAAAGATACCACAAAGAAAAATCAC
TTCCAATGTTAGATAAAACGAAATTTTTAGTACCTCAAGAATTAACAATG
AGCCAATTTGTCACAATTATTAGGTGAGTTTTTTGTTTTCTTGAATCTTT
TTGGTTATTGATACTATGTAGAAATACAAAAGGAATTCACTCAAAATTCT
CATAGGAGAAGGATGAGCTCAAAACATTTTAATGTGTTTTTCATTTACTA
ATTAATTTGTAGGACATCTTATAAAGTAGACACCATCTTTGTTTTGATGA
TAACGTGTTAGTTATTACATCAAATGACATATTAAAAGATAACAACCTAG
CAACTTCTCTTAATAATCACCTTGACAACATTGAGGAATTTAAGTGTAAT
GACAATAAGAGAGTAATTTCAAATGAGATATAATGAGAGATAAGCTTAAC
TGGCTTTCTCATCACTAAGGGAGACTGTTTTATTAAATGATGACTAGGTG
TGACCTTTTAAGGTTACACCCCACAATAAATATAAAGATTTTCAAGGCAT
TAATTGAGTGAATTTTTGCTGAACTTTATCTAATTCTACAATGATTCGCC
TTTGTTTACTCTGTCAATAAAGGAGCTAGAGGGAGTATTTTCCGACAAAC
ATTTGTCTATTTTATTTTCTACACAAACAACAGTCGAATTAAACCCCTTC
AGTAACCGGTAGAAACAATCTACTTTTATTCTTTTCAAATTGTGGTTTTT
TAGATAGGAATATGTTTTTCCTCTGTAAGCACACACACCTAAGGAAGGGG
ATTTGAGGTCAAACTTGAATTATCAAGCTCCTTTTTACTTTAAAACTTTT
CACCTCTAAGTCAAAGAGGAAAAACACTGTTTTGAACAATAAAAGATTTT
GAAAGTTTATATATTCTTTAAACAGAGTAATATTGATGATATTAAATCTT
TTGTGGGTTTCTTACCGCCATCTTTCACTTTACCTGAGCTCCTGAAATGT
CTTTGTTATGAAAAGGTAGAATTTCTACTGAGGTCTGGCGCGTAAGTGGT
CTCAATTAGAGTTATGCATACGTCACGGTTGAAATAAAACCAATAAGTGA
CAATTGATAGATTGTCAAGATATTTTTCTTACCGTAAACGGGCGTTCACA
TTTGAACCAAATGTTATGTAATTTGAATCAATCTTATAACACGAAAAAAA
CTGAAATGATTGACGTAACTTGTAATTCTACTGTTTCGTGATGCAGTTTG
GACTTTTTTGTCCCCTGCTAAAACACACAATTCCTTGCATGTCTGAGCAT
GATTACACATTAGAAGAAAAAACACAAAAAATAATTTTGTTTAAATTTCA
TTCCATTTAAATGATAACACAGACACCAATACGAATATCACTGGGTCGAT
GACTCAAACTTAAATTATAAATTAAGCACTTTTTAAGTTAGCCAGGTAGC
TTTTACGCCACGTTGTAAAGTCTCCTTGAGAATTTGTCAAATAGCGTCCA
GGTTTGATTGACGTAACTTTTAATTCTACTGTTTTGAGATGCAGTTTGGA
TTTCATTGTGCCCTGCTAAAACACACTTTAAAAATTTATTACATGTCTGA
TCATAATATCAAACTGTTGATGTTTAACTGTAAAGAATTATTTTTTTAAA
GTGCATTCAAAGGGATACTGTCTCAAAAGTATGTGGACACTTTAATATTT
TACCTTTTTCTCAGCACTTATTCATGCTGTAATTGAAAGTTATATACGGT
TTGAAAGATATTTCCAAGGAGAATAACCTAAAGGATAATTTTTTTTATTG
AGAAGTTGAAAATCGAAGAAGAAAAATGAAGACGAAAAAAAATATTTTTT
CTATTGTTTTAAATAAAAATCATAAATTTTTTAGNCGGTTTGAAAGATAT
TTCCAAGGAGAATAACCTAAAGGATAATTTTTTTTATTGAAAAGTTGAAA
ATCGAAGAAGAAAGATGAAGACGAAAAAAAAAATTTTTTCTATTGTTTTT
TAAATAAAAATCATGAATTTTTTAAAATATTTGAACCTTTCTGATCTCAA
ATCTGTGTTCAGATTTTGCGTATCTTTCTTGGATAAAAAGTTACAGCCCT
TTGAAGTAGGCTTAAAACGGCCAAATATGACCAAAAACAGCAAAATGATC
AACTTCAAAATGCTGTAACATTTTTTCTAGGGAATACAGGGGGGGGGGTA
CAGAGGCAGGGTACTAACCCATAGGGTACTAACTTGATTTTTTACTAAAA
TTTTGTTAAGTACCACCCACCCATACTTAGTACCGGGTACTACTTCATTT
TTGCTGTAAAAAATAGGGACACCACCCCTAAAATCTTAATTTTTACAGAT
TAGACCAAGAGGGGTACTATTGTTAGTTTTTCAGACTGAAAATTGACAAT
TAGTTCAAGAAAACCATCAATGATGGAGTCAGAAGCTTTTGTCCTTTGAT
TTCCATCACACACTTCTTGACCATTTTAGAAGTTTTGTCTTCAAAAAAAT
CGAAAAATTTCTCAAAAGAGTAAAAAAAATTTGTCGATTAAAAGAAATTC
AAATCAAAAAAATTAATATTTGAAAAAAGTCAAAATATTTCAACAAACTA
CTTTTTTTATTGAAAAACAGCAAAATTCTGTGAAAAAGTGCCCAAATGGT
ATCCTGTTCTTGCTTGAAGAGTGAAAAATACACACCCCCACCCCCAAAGT
AGTACCGGGTACTAACTTTTTTGAAATGCCAAAATAGACACCACCACCTG
GCTATGGGTCAGTACCCTGTGTTTGTACTCCCCCCTGGGGAAGACACAAA
AAATTTAAACACAGATTTGAAATAAGCAAGGCTTAAAAATTTTTGAACCA
GTAGGAAAAGTCCTATTTTTTCATCTTCGTTTTTTTTCTTCATTTTTCAA
CTATTCGAAAATCCTTTATCTTTTAGATTGTTTTCCTTAGAAATACCTTT
GCAACGGTGTATAACTTTCAAATATAGCACAAATGGATGCTGAGAAAATG
CTCAAAAACTAAAGTGTAGAACAGACATCACATTTAAATTTAGCCCTTTA
ACTCACTGCCGTTCGTATTTTTTAAGGGCGTGACCTATTTGCCCTGATTT
GCCACGGAAAAAAAATGATGGTTCGACCTATTTGCCAGATGTCGGCATAT
GCCGACATGAGCGACCACAGAGTTCACATTTAGCCTTATTTTCTGAAAAT
ATCAGAAATATAAGTGATATGTGTTTACTTTGAGTTTAAAATGTATAATT
ATGGAAAACATATTATATTAGGCCAGCGTCCGAGGTTCAGAAAAGGCCTT
AAAAATGGTTTTCGTAGGGCACCCCTTAGATCAGGGCAAATTTGTGATAT
TATGCTCCTAATAGGTNAATGTTATTGGAATTTGATAAAGTTTACAAAAG
TACAGCTACTGTCTAAATTTGATAAAGACTGGATGCAATTGTGCTTTTTT
GGACTAAGGAAGGCGAATCGCAAAAAATTGTTTGGTTCCCGTCATTTCTA
CCTTAAAAAATGGGGGTCGTTCGTTCATTCGGTTGAAAATATTTTNCGAG
TGAATCGATTTTTAGTTAATCGATAGAACTTATCAAGGGTCCCCCCTTTA
CTAACGGTTTTTTCGAAGTCTGAAAATCAAATACCTGATGCTACCAACTG
ATTGGTCAGCCTAAGCTGAGCATTCAAATAGGTAAAATTCATTTCTTCTT
CTTCTTCTTCCATAAGACGGCAAAAAAAAATCCGATTTCCCGATCTCACT
TTGGTTTCTCACTTTCTTCCGATCGGGTTAACTTTTTGGGTACTTTTAGC
GTGCGTTGTTTTTACAGATCATAATGTGGTGTTACTTTGATTTCTAAACT
TTCTTCCGATCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
GCTTGTTTTAAATAATTTTAAATCAAGTTATCAAATGTTTCACATTTTGT
ACATTATTCAACATTATTAGTCTACTCTGTTTCAGTACATCTCTTACATC
TGTTAGCCCACTTATTAAAGCTATCTAGCTAAGCTCTATTGGCTGACCTT
CCAGCCTCGGCTGGTTTATTCAGCTTGAAAAGTAGATAAAGAAAGTGGGG
ATATTTTTTAAGTTTCGACCACCTGGTGCCGAGAAATGTCATTTTAAGGC
GAAAAATCGACGTTTTGGGCGTTTTCCGATGACGTCTGCATATATTGAAA
TATATTTCAATTATTCAACTGTGCTTTTTAATGAAATCTAGTTAAATCGA
ACTTTCAATAAACTTATAAAAAAAACTTCTGGCAAATAGGTCGAGAGCTC
TCTTTTCGGCAAATGACGACACCGTCAAAGAAATCAAAAATGTTCTTGTC
GGCATTTGCCAACAGTGGCACGGAAAGGGTTAGTAAGATAGTCCTTTTAA
ACCGATTCGATGCCAATGAGACTTGCCCAATAAAACTTGTGTATTTCTTT
TTAAAACTGCCGTTCAAGTCTCATCTCATAAGAATATATTACTCATCTTG
CATTATACTCATTGATGCAAAGGATCTTGAATGAATTAGAACACTTATCA
TTGAAGAATTTCTTCGCTTTTCCCCGTTATTTTCAATTATTTTCATCTTT
TTCAAAGGATACGTTTTTGTCACTCTAGCCGATACAACAGGGCTGCAATT
TAAAAAAAATGTTGGTTTGCCGTCATCTGGTCCACCCTAACTCAAAACCT
GCCGACCCAAAATAATTTGTTGCCAATTTTAAAGAAGACTTTTTTCTTCA
AATCAGAACGATATAACAATCGTGAATTCCCTTGTAGCTCTTCAAATTTC
ATTTAAATATTATTCAAATGTAAACTGAACTTTCATAGATTTTCAGAATA
AAAATCTTTTGCCGACCGATCGACCCACCTCCAAAACCTAGGGTCGGGTG
ACGACAAACTAAGTCCAGCCCAGATGATTTCTTTTTATCATCTCACCTTG
ACGCCGAACAAGTACTTAGTACGGAGATGTGAAAATTGTCGGATTAATAA
GTTTGTTTTCCCTGTGTTTTTAAAGAATTTATCCTTTTTTTCCCTTAGAA
ATCGTATGTCATTGGCACCAACCCAATCCTTCTACCTGATCGTCAATAAC
AAAAGTTTAGCAAGTATGTCGACAACTTTACAAGAAGTTTATAAGGATGA
AAAAGACGAGGATGGATTTTTATACATGACTTATGCATCACAAGAAATGT
TTGGATGTTAATATTGAAACTTTGATTGGAATGCCATTTACACCAGAACA
ATTTTATGTTGGAATGGCACTCCTTTCAAACAACGAAACACAACATTGAT
ATTTTTAACTTGCATTCATGGTGTTGGTTTGAAATATCATCAATTATATT
TTTCATGGTTGGAATATTAGACTGTGGTATTCTTGCCATGTAGAATTGAC
TCTTCGCATATACGAGCTGAAGCATTGCTGGATAGAAGCTTTTTCATTTT
CTTTCATTTGGGTATACGAAATAAATTGAGAAAAAAGTTACAACAGAAAA
AATATTTATAATTTAATTTATAGTTTTTTTAAAATCATATGACAACAGTA
GTTCTAATTTGAGATTGATATTTTTAAAAATAAATGTCACCCGTTGTTTG
TTGGCTGAATTTGTACTCAGATGATGAAATTAGTTAACGTGTTTACAAAT
TTGAACTCGAAAAAGCCAATAATTTGTTTGACTCACGGAAAAGTTCCATT
GAGGACTTTTCAAACATGCATTCAATCGATTCATCACAAATTCAATTTTT
GTTAGCTTTGTTTACATTTTGCACTGATTCAGCTTTCAAACTGGAACTTT
CATACCTCTTATGATACGCAACATATTCACACCTTGTTGGCAATCAATCT
ATAATGCCGACGCAATCTTCTTTTTTACGATATTTTGAATTTTTAACTCA
CTTTTGCCCTTAAAACTATAGAAATGTACCATTTTTTTGTCTACAAATAT
TTTTGTATCGTATTTTTAATATTAACATTTTTTTCTTTGTAGTTCTTTTG
GTGTTTTTTGTCTAAATGTACGCGTGCTCAGTGAAAATTCTTTCCAAACC
TTGTCTGAAGGACAGTAACTAAATACTTTTGAGTTGATTTCTGAATGCAT
TCCTTTTTTGTAAATCTCACGGAAGAAGGAGGTCACTGGTCAAACGATTC
AAATCGTTCTTTGTTATATAACTATATGACTATCACCAATAAGTTCATTG
CTTCTTTTAAGATTCAAGTGATAAATTAAATTAAATAGCGGTTCTTGTGC
TCGTTGAAAGGGTTTTCACGAGTGGAATATTCTATCCCAAAATAATTTGA
AAAATGAAGAGAAAAACTCAGCTTCATGAAGAACCGTGCTATAATTATCA
TTTTCGCACACGTGATTCTTTGATCTTATAACATCAGAATGAAAAAAAAA
TCGAAAATACTTATTCAATCGGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015575XLOC_015575Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027613-exon-sc0000636-1575043694:148711..148912TCONS_00027613-exon-sc0000636-1575043694:148711..148912Clytia hemisphaericaexon
TCONS_00027613-exon-sc0000636-1575043694:146341..146396TCONS_00027613-exon-sc0000636-1575043694:146341..146396Clytia hemisphaericaexon
TCONS_00027613-exon-sc0000636-1575043694:146090..146196TCONS_00027613-exon-sc0000636-1575043694:146090..146196Clytia hemisphaericaexon
TCONS_00027613-exon-sc0000636-1575043694:137889..139264TCONS_00027613-exon-sc0000636-1575043694:137889..139264Clytia hemisphaericaexon
TCONS_00027613-exon-sc0000636-1510915933:148711..148912TCONS_00027613-exon-sc0000636-1510915933:148711..148912Clytia hemisphaericaexon
TCONS_00027613-exon-sc0000636-1510915933:146341..146396TCONS_00027613-exon-sc0000636-1510915933:146341..146396Clytia hemisphaericaexon
TCONS_00027613-exon-sc0000636-1510915933:146090..146196TCONS_00027613-exon-sc0000636-1510915933:146090..146196Clytia hemisphaericaexon
TCONS_00027613-exon-sc0000636-1510915933:137889..139264TCONS_00027613-exon-sc0000636-1510915933:137889..139264Clytia hemisphaericaexon
TCONS_00027613-exon-sc0000636-1491911889:148711..148912TCONS_00027613-exon-sc0000636-1491911889:148711..148912Clytia hemisphaericaexon
TCONS_00027613-exon-sc0000636-1491911889:146341..146396TCONS_00027613-exon-sc0000636-1491911889:146341..146396Clytia hemisphaericaexon
TCONS_00027613-exon-sc0000636-1491911889:146090..146196TCONS_00027613-exon-sc0000636-1491911889:146090..146196Clytia hemisphaericaexon
TCONS_00027613-exon-sc0000636-1491911889:137889..139264TCONS_00027613-exon-sc0000636-1491911889:137889..139264Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000636supercontigsc0000636:137889..148912 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
372.871	393.591	544.537	561.308	688.239	445.669	738.491	753.83	248.639	308.089	186.845	166.122	137.93	124.419	160.095	168.614	106.9	116.949	135.355	206.198	66.88	65.4049	203.219	185.789	42.9149	70.3368	453.142	347.708	268.944	246.217
Blast
[Close]
BLAST of TCONS_00027613 vs. Swiss-Prot (Human)
Match: MLP3C (Microtubule-associated proteins 1A/1B light chain 3C OS=Homo sapiens GN=MAP1LC3C PE=1 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 5.897e-55
Identity = 86/119 (72.27%), Postives = 103/119 (86.55%), Query Frame = 1 
Query:  169 SNKPFKQRKSFGSRRDEVAGIRAKFPSKIPVIVERYHKEKSLPMLDKTKFLVPQELTMSQFVTIIRNRMSLAPTQSFYLIVNNKSLASMSTTLQEVYKDEKDEDGFLYMTYASQEMFGC 525
            S +PFKQRKS   R++EVAGIRAKFP+KIPV+VERY +E  LP LDKTKFLVPQELTM+QF++IIR+RM L  T++FYL+VNNKSL SMS T+ E+Y+D KDEDGF+YMTYASQE FGC
Sbjct:    9 SVRPFKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLVPQELTMTQFLSIIRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYASQETFGC 127
The following BLAST results are available for this feature:
BLAST of TCONS_00027613 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MLP3C5.897e-5572.27Microtubule-associated proteins 1A/1B light chain ... [more]
back to top