TCONS_00027583 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027583
Unique NameTCONS_00027583
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length444

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027583 ID=TCONS_00027583|Name=TCONS_00027583|organism=Clytia hemisphaerica|type=transcript|length=444bp
CACAAATCCAGACTTTATCTTTTACCGAGTCATGACTTTAAAAAGAGTTC
TATCAATACAAAGCCATGTTGTATCAGGATATGTAGGAAATAAGTCTGCA
ACATTTCCTTTACAGGTATTAATTTTTTATATGTATTTCAcccacaatag
acctttttgcctttcccaggggatgtcaatcgaacgaaagTTCGATtacc
aatcgaaccaatcaAATTAATCGAATTTACTCGAATCCAATCGAATGAtt
gattttcgattagccgAATTGATCGAACGCCAATCGAATTCTAATCGAAA
CCGAAAAAcatgtgaaattcgattggtttcgattgagtTTGACGAGCTTC
GATTAGGGGTCAGTCACAAATTGATTCtaggttagaagaacgtcaattga
cgttttaaaagctgacccacccacccacacccaaaaacgtcaaa
Run BLAST on NCBI

transcript from alignment at sc0000635:84833..85276-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027583 ID=TCONS_00027583|Name=TCONS_00027583|organism=Clytia hemisphaerica|type=transcript|length=444bp|location=Sequence derived from alignment at sc0000635:84833..85276- (Clytia hemisphaerica)
CACAAATCCAGACTTTATCTTTTACCGAGTCATGACTTTAAAAAGAGTTC
TATCAATACAAAGCCATGTTGTATCAGGATATGTAGGAAATAAGTCTGCA
ACATTTCCTTTACAGGTATTAATTTTTTATATGTATTTCACCCACAATAG
ACCTTTTTGCCTTTCCCAGGGGATGTCAATCGAACGAAAGTTCGATTACC
AATCGAACCAATCAAATTAATCGAATTTACTCGAATCCAATCGAATGATT
GATTTTCGATTAGCCGAATTGATCGAACGCCAATCGAATTCTAATCGAAA
CCGAAAAACATGTGAAATTCGATTGGTTTCGATTGAGTTTGACGAGCTTC
GATTAGGGGTCAGTCACAAATTGATTCTAGGTTAGAAGAACGTCAATTGA
CGTTTTAAAAGCTGACCCACCCACCCACACCCAAAAACGTCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015556XLOC_015556Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027583-exon-sc0000635-1575043694:84833..85276TCONS_00027583-exon-sc0000635-1575043694:84833..85276Clytia hemisphaericaexon
TCONS_00027583-exon-sc0000635-1510915933:84833..85276TCONS_00027583-exon-sc0000635-1510915933:84833..85276Clytia hemisphaericaexon
TCONS_00027583-exon-sc0000635-1491911889:84833..85276TCONS_00027583-exon-sc0000635-1491911889:84833..85276Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000635supercontigsc0000635:84833..85276 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.26547	0.531007	1.65219	4.1468	1.56722	0	0.288204	0.904009	0.818871	1.23796	1.65772	0	1.19856	0	0.475785	0.535263	2.18947	1.31242	0	0.716276	0.390939	2.65608	0.376838	0.915396	0	1.5572	1.74409	2.03002	0.490477	0.40866
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027583 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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