TCONS_00027572 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027572
Unique NameTCONS_00027572
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1645

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027572 ID=TCONS_00027572|Name=TCONS_00027572|organism=Clytia hemisphaerica|type=transcript|length=1645bp
TCAAAAGATACTCCGAAAGAACAACGTAAAATTATCTTTATCCAACTGGA
GAAACAAACGAACGAATCTCTTGGTCTGGTCATCGTTGGTGGTGAAGACT
CCAAACGTTTGACACCAGGAATCTACATCAAACATATTAAACCTAACAGT
GTTTGTGAACGCGATGGTAGATTAAATGAAGGAGACAGAATCATTTCAGT
GAACGGCATCAGTCTTGAAGAATCAACACACGAACAAGCAGCTGAAATTC
TGAAGAGGGCTGGTAACAAGTTAGACCTCGTGGTGTCTAAAACGCCAAAT
AATGTCAGCTTACTTGAAAAATCAGGTCTGTCGCCAAGCATGGACAATTC
GCAAGTGATAAGGTACAAGAATTGGGACTCAGTGTTAggtgaaaacaatg
aaaaattgaagaagaaattaTCGGGAATCGACCTCATTGATGATGACACT
GAAAGTGAAGAACAGTTCAGTGAACGTGCTATTGACGTACCGGCAACAGG
TAGCAGAGACGACCAACTTGAAGTACAACAAACCTCTTACCAACAACCGT
CATCGGAATATGACGATCCTGCGCAGCTTGAACGAACTATGGATGACATT
GCGCATGATCTAGCCATGGATGCTATCCAAGAAAGAATCCAAGATGTAGA
GGATTGCAAGAGAGGCTCTACAACAGCATCAAGCAAGTCTCAAAGTCAGA
AACAATCCACAAGTGACAAAAACGAAGACAGATTCCACGTCAACTCTTCC
TTTCCTGCTCACTCTTCCGCCCAGCAGAGCCCACCCCAAGGAGAAGAGAT
CACGCCCCGTGCGAATGTTGTGGTTAATGATGTGGAAATAAGTCAAGGAG
ACGACGATTTCTCGTTCATGACTGAGTCGGACTTAGACGAGGAGAAGCCG
TCATCCAACCTCAAACGTTTTGGAGCGTTCCAAGCTCTTGATAGACTAGA
TGCAGATGAACCCTCTTCTTCATGTGCTCACGAAGAGGACGACGAGCGAT
CGCTTGTTAATCGAACGTTGGATCAAACACTAGACGAAGTTGAAGTTGAG
ATTGAAAAGATAAATGGATCGTTTGGATTTAGTGTCCAGGGTGGTAAAGA
AAGCAACCTGCCACTTGGTAGCATTTACGTCAAACAAGTTTACCCGAACG
GTGCAGCCGCGCGAACGAAGCGAATTCGAGATGGTGACCGTTTGTTGGCT
GTCAATGGAACGTCCCTGGAGAATATCAAACACCAAGAGGCTGTAACCAT
TCTAAAAGAGGCACCTAACAAGTCCGTCATCACTTTTGACCGGGGCATTG
AACTTCCGGACGAGCCTCAAAAAGAACCGGAACAGCCCGTAAATGAAGAA
ATCGAGAGATTACGtaaagatgaaaaagttttcGAAGTGAACGTGGAGAA
ACGTGAAAACGGACTTGGTTTGAGTCTAGCAGGTGGCAAGGATTCAGATG
TCTGCTACGGTGAGAAGATTATGATTCGTAAGTTGTTCCCTGGGTATGCA
TTGCACGAATGTGGTCGTTTTCTGGTTGGTGATGTCATTCTTGCCATCAA
TGATCAAGTAATGGAAGGGTTGACTTATCAAGAAGCAATTGCTGTCATTA
GAACCTCGCCAAAGATGGTGACGATCATAGCCAAGAGACCACAAC
Run BLAST on NCBI

transcript from alignment at sc0000635:127378..134684+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027572 ID=TCONS_00027572|Name=TCONS_00027572|organism=Clytia hemisphaerica|type=transcript|length=7307bp|location=Sequence derived from alignment at sc0000635:127378..134684+ (Clytia hemisphaerica)
TCAAAAGATACTCCGAAAGAACAACGTAAAATTATCTTTATCCAACTGGA
GAAACAAACGAACGAATCTCTTGGTCTGGTCATCGTTGGTGGTGAAGACT
CCAAACGTTTGACACCAGGAATCTACATCAAACATATTAAACCTAACAGT
GTTTGTGAACGCGATGGTAGATTAAATGAAGGTTAGCGAGTCTACCACTT
TCGTTATCTTTCTATACATTCTCATGAAgcatattatatacattttatgT
CGGCTTATTATAACCTTTAGGTTAAATTGAGAATAGTACAAGTCAGGTCT
ACAAATTTCAACCCTCTATTTGAATTTTCTGTATCCGGAACAAAACAAGT
CATTGTTAAGGAACTTCCGTAATTCGATTTCGAAGCAAATTATTTCAGAA
TTTGTTTCCTAAAGTACTAATATGCCCATGTTTTCATTCACAATAAGATa
acataaaatgctttttttaatATTCTATTTCACACCAGGAGACAGAATCA
TTTCAGTGAACGGCATCAGTCTTGAAGAATCAACACACGAACAAGCAGCT
GAAATTCTGAAGAGGGCTGGTAACAAGTTAGACCTCGTGGTGTCTAAAAC
GCCAAATAATGTCAGCTTACTTGGTACGTAAAGAATTATAGTAATATTTC
ATGTGAAATTATTTTTAACGTGAAATTCCATTCCGTTGGGTTGGTAGTTG
ATGAATGCAAGAGTTAAACACTATACAATACTTTTGATCTTAATGTGCTT
TAAATGAGTTTTGCATACCATGCTTAAAGAGCCTAATCTCAACCTtctat
gaaaatgtttttttaattaggTTAGTTAGATATCAATCAACCCGAtaaat
tttttcccattttagaGGTTAGAGCTTTAGTCTGTATAACGTCAGTTTTT
TTCCCAGGCCTAACATTCAGGtcccctctcaaaaaagtctcaaaatttca
tttatctTCAAACCAATCAGTTGCGATTGCATCCGGGATTGCATCCCACG
AAAGATGCTACAAATCCTAGAAGTCGGCCCCTTCTATTAACGTTACAGTT
CTGTTCTGGCAGTTTGGCCACtgaaaaaagtcaattttcaaaagattaag
TATAAAACTTGGGAAGAAGGTGAAAAAGATCATCAAGgctaaaagtagaa
ttttaagatttttcaaggTAAATTGAAAGAGTTATTTAGTTCTCTACCCC
TTCTATCAATGTTACATCTTTCTACGTTCAGAAAAATCAGGTCTGTCGCC
AAGCATGGACAATTCGCAAGTGATAAGGTACAAGAATTGGGACTCAGTGT
TAggtgaaaacaatgaaaaattgaagaagaaattaTCGGGAATCGACCTC
ATTGATGATGACACTGAAAGTGAAGAACAGTTCAGTGAACGTGCTATTGA
CGGTATGTTATGACCAAGCTATATACCCCATTATTTGATAGGGTTTTTTT
TTAAGTGGTACCCGCATAGAAGCCGTTGTAGTGTTaaaactttgcctaac
gacCATCGGAACTACATTGTGTCCGAACGTAGTAGATCTAGCACTCTCCA
ATCAAAGTATTTTACTTGGCTTGAATATGAGGGTGCATTGTCTTTTCTTC
TctttgggaaaatgaaaatctgTGATATCTAgaccaaaataaaacaaaaa
catcattaaGTTTATAGTTGATAATCAGTCACATAGCGATGCTCCGCCCG
GGAAAACACTCCAGCCTCTGATTTTTGGGTTTTCGGCAGTTCAACCCTAG
CAGATTCTTAAGTCATCGACcgattttttcaaacaaaatgtaTGACCCCC
TTTCTGGAGaaacaatagcgagtttatgaaANNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNtgattgaatttaaattaatttgtaaataatagTTGATC
TTGAGTATCAACCTTCTAGATAGATTTGTAATtaatagttgatattgatt
agcctcgagctaagtacatattgtactactttgcatcaactttaaagaaa
agaaacataaacataaacatgtattcgagataaatcgagggggacggtat
aaagcaaagtcaccgtccaaaaaaacaaaataccgTCGtttgtttaggtg
agcaaaggcgatatagagccgtacatcaactattgattttgttttgtatc
atttcacttaccgtcgccctcgatatcctccgatacataaactgtAATAT
ATATCATCGTAAAATGAGCACGTGTCTCTTCTAGGGTTATGATGTAGTAC
TGCTTACAATGTTTCCGTGTGATAATAAAGTTCTAAATAACGTTCTCATT
CAGACGGATTTCCATCTCTGCGAAGTATAAAAAGAGACTTTTCAAAAGCA
AAATtcagcaaaatattgaaaatcttgGGCTAATCTTCACTGTTGATTCC
ATTTTCTTTCTCTGACGAAAAACTATGCTTTGACCACTACTTGTTACGCT
CTTGTTGTAGTACCGGCAACAGGTAGCAGAGACGACCAACTTGAAGTACA
ACAAACCTCTTACCAACAACCGTCATCGGAATATGACGATCCTGCGCAGC
TTGAACGAACTATGGATGACATTGCGCATGATCTAGCCATGGATGCTATC
CAAGAAAGAATCCAAGGTGAGTAATGGAATGAAGCTTTagagctttaaag
atttttgacgTTGTTGAAACTGATTCTTTCGTCGATTTAGGCGACGGTTA
AAGTCAATCTTAACATTCATTCTACATAGATTTCAGACCCCCTCCCATTC
TAATGCTGTCAAATTGGCTTTGATATATAAGCTTTTATATGCGAGACCAA
GGGAAATCGTTTATAAAAGCTCTCAATCATAATTCACAGCTCGTGTATCT
AGAGGGTAGGTTTGCTTCAAGCAATTATTTGTTTACACATACACAAGAGG
CAGAGTAAGTAAGATGTAATtattccagaaaagtaacaatTAACGTACTA
CCATTAATCCATCCATCTTAGATGTAGAGGATTGCAAGAGAGGCTCTACA
ACAGCATCAAGCAAGTCTCAAAGTCAGAAACAATCCACAAGTGACAAAAA
CGAAGACAGATTCCACGTCAACTCTTCCTTTCCTGCTCACTCTTCCGCCC
AGCAGAGCCCACCCCAAGGAGAAGAGATCACGCCCCGTGCGAATGTTGTG
GTTAATGATGTGGAAATAAGTCAAGGAGACGGTGAggaatttttcttaat
ttcataATCATAACTCGGGCTTACTTTTTAAGAATCCTTTGCTCAATATG
CTTTTGCGACAGTTGAGGTGACAAATTATTGCCGGGGTAAATTATCCGAT
ATAGATTTGAAGATCTGAAGGTGTATTAGTTTATTTTCTATCTACGATTT
TTACAactttcaaaatgtttcaatcCTGTCAAGGATATAAATAAAGAAGT
GCCTCTGTATTCATTCTCCGACaatcttattttttcatttgaattatTTA
TGATTTCTCTAGACGATTTCTCGTTCATGACTGAGTCGGACTTAGACGAG
GAGAAGCCGTCATCCAACCTCAAACGTTTTGGAGCGTTCCAAGCTCTTGA
TAGACTAGATGCAGATGAACCCTCTTCTTCATGTGCTCACGAAGAGGACG
ACGAGCGATCGCTTGTTAATCGAACGTTGGATCAAACACTAGACGAAGTT
GAAGTTGAGATTGAAAAGATAAATGGATCGTTTGGATTTAGTGTCCAGGT
ACCATTAAATGTCAAATTCTTTAACCCCTACACGCTTCAACCACTCTTTT
TATTCTTTCTAGGGTGAATTTGTCAATGGGTCCTGTCGTGTATTGGAAAT
CTGGGGCGATGAAGTAAAATATTGTAAAACAATGTTTGCAATTTTTAATT
GACAGTTTTAGAATCGAGGTCTGAAACCGCGCTATGAAAAACATActgaa
ctttcaaaaataattgaattgaatcatgaaaacaaaaaagtgcgCGTTAC
GTTTTGTTCTTTTTGAGAAAAGATAGTCTTTcttctaaaattaaataatg
CAGTTCATCAATTAGAAAGCCAAAATTTCCTTATACAGCCTTTTGAAAAA
TCCGTAATTCGGATATGAGTTGTAACTTCAAGTGATTCAATTTTAAGTCT
GGTCATGTTAGTAAGAACATTTCAACTAGAAATTAAACTTTTCATTGAGC
TTATTTTAGCAATTCATGTACTTAGTAACATTTTCTAATACAGTGTATAC
GCAGTGATCTGTATTGACATTATCCATTTaactttatatttatttattag
tAGAATGTTAGTTAGAATGTTAGTTTATATACACTTTTCCTTATTCTACT
TTAAGGGTGGTAAAGAAAGCAACCTGCCACTTGGTAGCATTTACGTCAAA
CAAGTTTACCCGAACGGTGCAGCCGCGCGAACGAAGCGAATTCGAGATGG
TGACCGTTTGTTGGCTGTCAATGGAACGTCCCTGGAGAATATCAAACACC
AAGAGGTATGAATCTCATACAAACTTTCATCCTCCATCTTGCTATACATT
TTTCTGTGTGTCAACTGGCTTTAAAcggtgtttttttatattttgaatcc
TATTTTGAATCTACGGGTTTATAGTTTTTTAACGAAATTCTTTTCATATT
CTCgtttcaatttttggaagaGTGAAAGAAATTTGATTACTGATGGCTCA
AAATATAATTTAGCCAATTCTGAAAGTTTGAATTTATAAACCTTGATATT
TATAACCTAATCGCAAATCAAGACTTTTCTTATGCCCCTATCTCTTTAGG
CTGTAACCATTCTAAAAGAGGCACCTAACAAGTCCGTCATCACTTTTGAC
CGGGGCATTGAACTTCCGGACGAGCCTCAAAAAGAACCGGAACAGCCCGT
AAATGAAGAAATCGAGAGATTACGtaaagatgaaaaagttttcGAAGTGA
ACGTGGAGAAACGTGAAAACGGACTTGGTTTGAGTCTAGCAGGTGGCAAG
GATTCAGATGTCTGCTACGGTGGTAAGTGGATTTAAATTGTTGTTTGTCA
TCTAATATTACATCTAATATTACATTGGTGGACTGGCGACTGCCTACGCT
TAAGCTCTAAAGCAGAGACCAATGAAACTCTATATCTATTATATCTTCAA
TTAGTTTAAATGGTTATGTTATTGTTTCTGTTACTGTTCTTCTACGCTAT
ATGGCCCCGGGGGAGACAATGACTGAACTGCCTAAAAGCTAATTTATTAT
TCCATGGTCAGCCAAATCTCAATCTCCTTTGTTATAACTTTGTCGTGAGA
TCGTAATGCTCAAAATGGTCCCAATCgtctcaaatttttatttgtaattT
GGTGTCTTACCTTTACAGAGAAGATTATGATTCGTAAGTTGTTCCCTGGG
TATGCATTGCACGAATGTGGTCGTTTTCTGGTTGGTGATGTCATTCTTGC
CATCAATGATCAAGTAATGGAAGGGTTGACTTATCAAGAAGCAATTGCTG
TCATTAGAACCTCGCCAAAGGTTTGAAACGTTTGTTTGTCTGTCTGATGT
TGTTAGTAAAGCCTCCTTACAATTTGCATTCGGGCAGTATTTTTATGGCC
ACTTTCTTATGAACACCATCCCTGGCCATCCAGATGTTACCTTCAAGTTT
TTCCCTCTTCTTGCTTGGCGAAGCATTTAGAGGGGCGTGTAAATAGTTAA
ACCTTTTTACTTACTTTTAAGATCGGGAAACATGATTTTAGTTTTCCAAT
AGCactgtttttcataattataaatTAACTGTGTTAAATAAAGAAATAGT
TAATGCTCATCTCCTTACGCCATCAGATGGTGACGATCATAGCCAAGAGA
CCACAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015549XLOC_015549Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027572-exon-sc0000635-1491911889:127378..127558TCONS_00027572-exon-sc0000635-1491911889:127378..127558Clytia hemisphaericaexon
TCONS_00027572-exon-sc0000635-1510915933:127378..127558TCONS_00027572-exon-sc0000635-1510915933:127378..127558Clytia hemisphaericaexon
TCONS_00027572-exon-sc0000635-1575043694:127378..127558TCONS_00027572-exon-sc0000635-1575043694:127378..127558Clytia hemisphaericaexon
TCONS_00027572-exon-sc0000635-1491911889:127866..128000TCONS_00027572-exon-sc0000635-1491911889:127866..128000Clytia hemisphaericaexon
TCONS_00027572-exon-sc0000635-1510915933:127866..128000TCONS_00027572-exon-sc0000635-1510915933:127866..128000Clytia hemisphaericaexon
TCONS_00027572-exon-sc0000635-1575043694:127866..128000TCONS_00027572-exon-sc0000635-1575043694:127866..128000Clytia hemisphaericaexon
TCONS_00027572-exon-sc0000635-1491911889:128609..128779TCONS_00027572-exon-sc0000635-1491911889:128609..128779Clytia hemisphaericaexon
TCONS_00027572-exon-sc0000635-1510915933:128609..128779TCONS_00027572-exon-sc0000635-1510915933:128609..128779Clytia hemisphaericaexon
TCONS_00027572-exon-sc0000635-1575043694:128609..128779TCONS_00027572-exon-sc0000635-1575043694:128609..128779Clytia hemisphaericaexon
TCONS_00027572-exon-sc0000635-1491911889:131338..131493TCONS_00027572-exon-sc0000635-1491911889:131338..131493Clytia hemisphaericaexon
TCONS_00027572-exon-sc0000635-1510915933:131338..131493TCONS_00027572-exon-sc0000635-1510915933:131338..131493Clytia hemisphaericaexon
TCONS_00027572-exon-sc0000635-1575043694:131338..131493TCONS_00027572-exon-sc0000635-1575043694:131338..131493Clytia hemisphaericaexon
TCONS_00027572-exon-sc0000635-1491911889:131849..132058TCONS_00027572-exon-sc0000635-1491911889:131849..132058Clytia hemisphaericaexon
TCONS_00027572-exon-sc0000635-1510915933:131849..132058TCONS_00027572-exon-sc0000635-1510915933:131849..132058Clytia hemisphaericaexon
TCONS_00027572-exon-sc0000635-1575043694:131849..132058TCONS_00027572-exon-sc0000635-1575043694:131849..132058Clytia hemisphaericaexon
TCONS_00027572-exon-sc0000635-1491911889:132340..132575TCONS_00027572-exon-sc0000635-1491911889:132340..132575Clytia hemisphaericaexon
TCONS_00027572-exon-sc0000635-1510915933:132340..132575TCONS_00027572-exon-sc0000635-1510915933:132340..132575Clytia hemisphaericaexon
TCONS_00027572-exon-sc0000635-1575043694:132340..132575TCONS_00027572-exon-sc0000635-1575043694:132340..132575Clytia hemisphaericaexon
TCONS_00027572-exon-sc0000635-1491911889:133183..133332TCONS_00027572-exon-sc0000635-1491911889:133183..133332Clytia hemisphaericaexon
TCONS_00027572-exon-sc0000635-1510915933:133183..133332TCONS_00027572-exon-sc0000635-1510915933:133183..133332Clytia hemisphaericaexon
TCONS_00027572-exon-sc0000635-1575043694:133183..133332TCONS_00027572-exon-sc0000635-1575043694:133183..133332Clytia hemisphaericaexon
TCONS_00027572-exon-sc0000635-1491911889:133627..133849TCONS_00027572-exon-sc0000635-1491911889:133627..133849Clytia hemisphaericaexon
TCONS_00027572-exon-sc0000635-1510915933:133627..133849TCONS_00027572-exon-sc0000635-1510915933:133627..133849Clytia hemisphaericaexon
TCONS_00027572-exon-sc0000635-1575043694:133627..133849TCONS_00027572-exon-sc0000635-1575043694:133627..133849Clytia hemisphaericaexon
TCONS_00027572-exon-sc0000635-1491911889:134196..134347TCONS_00027572-exon-sc0000635-1491911889:134196..134347Clytia hemisphaericaexon
TCONS_00027572-exon-sc0000635-1510915933:134196..134347TCONS_00027572-exon-sc0000635-1510915933:134196..134347Clytia hemisphaericaexon
TCONS_00027572-exon-sc0000635-1575043694:134196..134347TCONS_00027572-exon-sc0000635-1575043694:134196..134347Clytia hemisphaericaexon
TCONS_00027572-exon-sc0000635-1491911889:134654..134684TCONS_00027572-exon-sc0000635-1491911889:134654..134684Clytia hemisphaericaexon
TCONS_00027572-exon-sc0000635-1510915933:134654..134684TCONS_00027572-exon-sc0000635-1510915933:134654..134684Clytia hemisphaericaexon
TCONS_00027572-exon-sc0000635-1575043694:134654..134684TCONS_00027572-exon-sc0000635-1575043694:134654..134684Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000635supercontigsc0000635:127378..134684 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0.0655908	0	0	0	0	0	1.81053	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
[Close]
BLAST of TCONS_00027572 vs. Swiss-Prot (Human)
Match: FRPD2 (FERM and PDZ domain-containing protein 2 OS=Homo sapiens GN=FRMPD2 PE=1 SV=3)

HSP 1 Score: 119.783 bits (299), Expect = 3.764e-28
Identity = 75/219 (34.25%), Postives = 112/219 (51.14%), Query Frame = 1 
Query: 1045 VEIEKINGSFGFSVQGGKESNLPLGSIYVKQVYPNGAAARTKRIRDGDRLLAVNGTSLENIKHQEAVTILKEAPNKSVITFDRGIELPDEPQKEPEQPVNEEIERLR-----------------KDEKVFEVNVEKRENGLGLSLAGGKDSDVCYGEK---IMIRKLFPGYALHECGRFLVGDVILAINDQVMEGLTYQEAIAVIRTSPKMVTIIAKRP 1641
            VE+ K +G+ GFSV GG  +++P G IYVK + P G AA+  +I  GDRLL V+G  L  + H++AV  L      + +  +R   +P   Q+ P    +   ER                    D   FEV ++K  NGLG S     + + C   K   + I++LFPG    E G    GD+ILA+N +  EGL +QE + ++R +P+ VT++  RP
Sbjct:  951 VELVKEDGTLGFSVTGGINTSVPYGGIYVKSIVPGGPAAKEGQILQGDRLLQVDGVILCGLTHKQAVQCLTGPGQVARLVLER--RVPRSTQQCPSANDSMGDERTAVSLVTALPGRPSSCVSVTDGPKFEVKLKKNANGLGFSFV-QMEKESCSHLKSDLVRIKRLFPGQPAEENGAIAAGDIILAVNGRSTEGLIFQEVLHLLRGAPQEVTLLLCRP 1166
The following BLAST results are available for this feature:
BLAST of TCONS_00027572 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FRPD23.764e-2834.25FERM and PDZ domain-containing protein 2 OS=Homo s... [more]
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