TCONS_00027561 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027561
Unique NameTCONS_00027561
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length271

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027561 ID=TCONS_00027561|Name=TCONS_00027561|organism=Clytia hemisphaerica|type=transcript|length=271bp
CGGATTTGAAGCCATTTACAACAACAGATTGTTTTCTGCCTTTCAAAAAC
GATTCAATCCATCGCAATAGCTTTCCTTTGATCCCGAGCTGAGACAATTT
GTGTAACAAAATTGCATGATCAACTTTGTCGAATGCCTTACTGAAGTCCA
AATAAATTGTGTCAACATTTTAATACCTCTCTCAAGGTATGATAGTATTG
TATCATAATGTTCAAGGAGTTGACTCAAACAAGATCTACCTTGTCGAAAG
CCATGTTGGGAGTCATTAAAA
Run BLAST on NCBI

transcript from alignment at sc0000632:165607..165877

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027561 ID=TCONS_00027561|Name=TCONS_00027561|organism=Clytia hemisphaerica|type=transcript|length=271bp|location=Sequence derived from alignment at sc0000632:165607..165877 (Clytia hemisphaerica)
TTTTAATGACTCCCAACATGGCTTTCGACAAGGTAGATCTTGTTTGAGTC
AACTCCTTGAACATTATGATACAATACTATCATACCTTGAGAGAGGTATT
AAAATGTTGACACAATTTATTTGGACTTCAGTAAGGCATTCGACAAAGTT
GATCATGCAATTTTGTTACACAAATTGTCTCAGCTCGGGATCAAAGGAAA
GCTATTGCGATGGATTGAATCGTTTTTGAAAGGCAGAAAACAATCTGTTG
TTGTAAATGGCTTCAAATCCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015539XLOC_015539Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027561-exon-sc0000632-1491911889:165607..165877TCONS_00027561-exon-sc0000632-1491911889:165607..165877Clytia hemisphaericaexon
TCONS_00027561-exon-sc0000632-1510915933:165607..165877TCONS_00027561-exon-sc0000632-1510915933:165607..165877Clytia hemisphaericaexon
TCONS_00027561-exon-sc0000632-1575043694:165607..165877TCONS_00027561-exon-sc0000632-1575043694:165607..165877Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000632supercontigsc0000632:165607..165877 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.32604	2.14309	6.27119	0	14.9381	11.5674	10.1442	13.4507	2.47053	7.62039	1.00461	2.7283	4.14516	4.77796	0.328882	1.17464	1.57202	1.08208	5.8486	2.3014	4.6994	3.0846	1.89416	0	4.78266	7.15964	2.42128	2.12916	0.887799	1.53912
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027561 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top