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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027507 ID=TCONS_00027507|Name=TCONS_00027507|organism=Clytia hemisphaerica|type=transcript|length=570bp
TTTCATCTTTCATTTGGGGACATAATGAGGTTGAATGGTTTTTGATCCAT
TTTCGACTCCTTTCGAAATATCAAGGCTGTTAACATGTACCATTGTCTCC
TGGTATCAACTAAGATCATTATCTTATTGCATCCTGGTCAGAGAGCACCT
TGCACAAGTTGTACCCTTCAAACAAATCTTTCAGATTCGCTTTGGAACTT
TAATCTTTGGTCCAGAGGCAATGTTTTAAGTTCCAGTTCCAaTAAATGTT
GGGTATATCTTGCTATATCTTGGATAATGTGACCTTGGTTGGATGGCTGA
CTCGTATGCAAGCAATTGGTATTTTGGTATAATTTTTCCTATATCCTACA
ATCTCAAATCActatttttcacttttgatcTTTCGGGACCCTACGATTCC
TGAATAAAGGTGGTTCCTGTAATCAACAGGTTCCCTCGAGAAGAGGTCAT
TTTTCTATTATAAGTACATAAAAACATAGTTTTAGTAATTGTTGGAGAAC
ATTGTAGTGACAACTTCAGGGACTTGCGCGTTTTTCCttccaattctttt
ttttgcttatgtatTTTGAT Run BLAST on NCBI transcript from alignment at sc0000631:160754..164721+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027507 ID=TCONS_00027507|Name=TCONS_00027507|organism=Clytia hemisphaerica|type=transcript|length=3968bp|location=Sequence derived from alignment at sc0000631:160754..164721+ (Clytia hemisphaerica)
TTTCATCTTTCATTTGGGGACATAATGAGGTTGAATGGTTTTTGATCCAT
TTTCGACTCCTTTCGAAATATCAAGGCTGTTAACATGTACCATTGTCTCC
TGGTATCAACTAAGATCATTATCTTATTGCATCCTGGTCAGAGAGCACCT
TGCACAAGTTGTACCCTTCAAACAAATCTTTCAGGTAATTAATTGTCATT
ACATCCATTTTTAGAATATTGTGTCATTTGTCATTGTTGAGAACTTGTCG
GTACCTGGCGTTGTGAGCAAGTTAAGCTGTTGCTGAACACACTTTAGTGC
CTTCACCATGGTCAAAATTTCGGTTGTGAGATTTGAGTTCCTTACagtca
cttttaacaaaaagctGTCGTTATACCTTGTAGCATGCTGTgtagtaatt
atcttttttattataaaaagacgttatgaactttaaaaaaacgttAACAA
GATATTATGCTACccttttttacaaaagtgcttagttttaattgataatt
aacctatgtgtttttattttttttaattctctgccaaaatattcaaaatt
catAGGTCAAAAGCcactacagtatgtggcccccaaaacggcgatcaaat
ttgaaatttctcaaatctagaggaaaagagattttgcaaaaatttttgct
gcatgaaaatctttaacatctctactttatttcctggaagttctttttca
aaattttcaatttcagcaATATTatagataggtagcttttttctaatggc
ccccaaaacggaggtttgaaattttagcgatttctcgagatatctttaag
atatgaatacaaaattttgaccaNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgggcccccaaaacgg
aggtgtagttaaaatcaaattattaagcccagtggtaatagggggaaaaa
ctatgaacatatttgtgttttcctttaaatttacgacccgatggatgggg
aatttatgatttttatgaaatatttcaagattttcgatattgcaaagtcc
aaactgaaaatttaaaaattttcaaaatgacaattttgatctAACAActt
cttaatcaagtttttgaaaacaaatctcttttgaaaaaagttccattcgt
gtatggaataagctgtgaaaattttagaaaaaaagcttaactgaaactga
aaatattaagctttaaagatatttttctcctatattttgcaaaaaaatga
cagaatagacgatatcagctttccgaattctccccgaatgattacccatg
atccattgcgcaaaaaaacttcacggacaatattgacttactgaattttt
ttgcttaatgatcatgggtaatcattcggggagaattttgttaagccgat
atcgtctatttgccgtttttgctgattcagcgaaaacttttatataatgt
tttttgttaactcaaggtgataggaatagaattccaagattttttgcttt
ttctcatatttagaattttcggttttgtcaatgctgattctagggctcaa
aaatactggttgaccttcaagatgctatatcttttacccagcctctaaag
tcacagatgtatttgcattttctgaacggcattaggtgaagaaagtttcc
tatacctcgttttcataacttattttcaatatccaaggagctagagtgag
ttatatgcaatttttatctaattttggtgttaaaatatattctttagacg
caaatatgttattttgaatctgtctgaaaccagcaaaaacatgctcattt
ttaagtataaccatcattctttcaaaataaacaaaaatcgtttaattctg
ataaatctacaagtcagaatcttcattttAATGAAAACCTCCGTTTTGGG
GGCCGTGTCATTGATTTGCTGTGTAGATCATTCAAAAAAACATATTTCAT
ACTATGGAAAACTTTGTTGGAAAGATAACAGGTTGGGTGAAATTATAGAC
ATGGCAAGAGATTCTTCAGAAAAAAGCAGGAAGGACACGTAGACAAAATA
GCGTAGCAGCGTAACTCTTTAAATTTGAAAAACAAAAGGACAATTTCATG
TTCGTCATAACTTTACGAATTCAAACAACAATGAATGACTTAGACTTGCA
GCAAAATAATTATCGATTTAGATGTTTTTACGAAAAAAGAACTTttgttt
ttaccgccttttaaATGTCTTTTTATGTTCTGACAAactgtcttgtgatt
cttatgttttattttgaattatttcttttctgccccccccagcagtttgc
gtgaatgggcatttttcggttgcgtgaatgcatgaatgcatgaaaattga
aaataaaatgcgtgaatgcgtgaattgaaaaaacttgcgtgaacataaag
atccactttttgattgcgtgaatgtgtgaatctgggctattttgtgcgta
aatgcgtgaattttcccttttttccaccgattataggaagttttcccaat
tttctgatgtttccctgatttttcccgaaaattttcagattttctgaaaa
atccggttattgcgtgaaactcaaggtgaatgcgtgaatttcgaaaaaaa
attgcgtgattgagggtccgctggggggcctcttttCTGTAACAGATTTT
GTTTTAGTTAATagatcttgttttgttttgtaaagAACTAGAATGTTTTA
AATCAAATTAGGTCgtcaattacattcgaaaatttaaaacaaaagaaaag
aaaaacattaaagCGGGCAAGCCAAGGCAGAAATAATAATCGCCAGATTA
ATATTGGACTTTAATTTCAAAACGGCTGAATGAGGAAACCAGGATCTATC
AATCAAAAGGATattatcgagaacaaaaacaTAACATTACTTGCGAAAAT
GAAAGTTACACACAGAACGACATACAGATTACCGCTATTGATATAAAGAT
AAGAATGTTAGATTTTCAAAGCAgctagatttttttcataaagagAAATT
GAGCACTTGTTGTGAAATGGTACTATGAATTGCAGCAGATTGCAAGGATC
AAATTCcaaattggaaaaaatcaaaaatttaaataatgtaaattttggtt
gactaaatccttttttccttttttatgtaaataaacaattttcttttgag
aaaattgaaCAGCTTCTTGATTCTGACAGATTCCGAGAATGCCGAACTTC
CCCAAACGAGTTAACGCAAGCAATGAATTTCTTTTCTGCTTTCGCTTGCT
CAACACAGCTTTTAATCAttatgtcttctttttcaatttagATTCGCTTT
GGAACTTTAATCTTTGGTCCAGAGGCAATGTTTTAAGTTCCAGTTCCAGT
AAGTATTTTccctaaaatttttttctataccCACATTTGGGTTCAAAGGT
TTTACTGACTTGAGCTAATATATCTTTACGTTCGTTTGCATAGAAAGATG
GACTCattcaataattttcatttattttgtgattttcagaTAAATGTTGG
GTATATCTTGCTATATCTTGGATAATGTGACCTTGGTTGGATGGCTGACT
CGTATGCAAGCAATTGGTATTTTGGTATAATTTTTCCTATATCCTACAAT
CTCAAATCActatttttcacttttgatcTTTCGGGACCCTACGATTCCTG
AATAAAGGTGGTTCCTGTAATCAACAGGTTCCCTCGAGAAGAGGTCATTT
TTCTATTATAAGTACATAAAAACATAGTTTTAGTAATTGTTGGAGAACAT
TGTAGTGACAACTTCAGGGACTTGCGCGTTTTTCCttccaattctttttt
ttgcttatgtatTTTGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027507-exon-sc0000631-1491911889:160754..160937 | TCONS_00027507-exon-sc0000631-1491911889:160754..160937 | Clytia hemisphaerica | exon |
| TCONS_00027507-exon-sc0000631-1510915933:160754..160937 | TCONS_00027507-exon-sc0000631-1510915933:160754..160937 | Clytia hemisphaerica | exon |
| TCONS_00027507-exon-sc0000631-1575043694:160754..160937 | TCONS_00027507-exon-sc0000631-1575043694:160754..160937 | Clytia hemisphaerica | exon |
| TCONS_00027507-exon-sc0000631-1491911889:164195..164251 | TCONS_00027507-exon-sc0000631-1491911889:164195..164251 | Clytia hemisphaerica | exon |
| TCONS_00027507-exon-sc0000631-1510915933:164195..164251 | TCONS_00027507-exon-sc0000631-1510915933:164195..164251 | Clytia hemisphaerica | exon |
| TCONS_00027507-exon-sc0000631-1575043694:164195..164251 | TCONS_00027507-exon-sc0000631-1575043694:164195..164251 | Clytia hemisphaerica | exon |
| TCONS_00027507-exon-sc0000631-1491911889:164393..164721 | TCONS_00027507-exon-sc0000631-1491911889:164393..164721 | Clytia hemisphaerica | exon |
| TCONS_00027507-exon-sc0000631-1510915933:164393..164721 | TCONS_00027507-exon-sc0000631-1510915933:164393..164721 | Clytia hemisphaerica | exon |
| TCONS_00027507-exon-sc0000631-1575043694:164393..164721 | TCONS_00027507-exon-sc0000631-1575043694:164393..164721 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000631 | supercontig | sc0000631:160754..164721 + |
Blast
The following BLAST results are available for this feature:
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