TCONS_00027502 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027502
Unique NameTCONS_00027502
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length836

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027502 ID=TCONS_00027502|Name=TCONS_00027502|organism=Clytia hemisphaerica|type=transcript|length=836bp
GGCGAAAAAATCACATGAAATTCATAAACAACGTTACTATATACAATCtt
cacaacaacaaaacaacagAAGATCAAAAAATGGTTCACGGCGACGAGTC
gttaaatttacttttatttggTTTAGCTGCGTTTACTATTGTTTTGATAT
TTGTATTCTTTATGGTATATCGTTTACTCGGTTGCCGGCTAAGTTGTTGG
ATGTACGGCATCCGGATTAGATTTAagaaaaaacgaaaacgaaagtgtat
ACGGTATAAAAAATTTACCAATATTGATCCGAAAAGTATGGAAAATAGTT
TGGATGTTGGTAACTCAGTATCGATAGATAATATTGATAATAAGTTATGT
TGTTTGGCTTTGTATTGGGATAAAGATGATGACGAGACGGAAGTAATTTT
ACCGAATTCTCATCGAGTGACTTATGGTGAATTTCAACCACCTACGCAAA
CAACGGAACGCTTTATAGATTGCTGTTGCGCATGCGTAGAACGGTTTCCA
CAGCAACCTAAAAACGATACATGCCCGATATGCTTGGATTTTTTTACCCA
GAATACATCACTAGTGTTGTTAAATTGTTCCCATGGTTACCACGATAAAT
GTTTGACTGATTGGTTGAAAGCGAACAGTGTTTCATACGTGCAATGCCCG
ATCTGCAAACGTGGTATGCACGTTGAGGGGTTTGGGGAAGAGTATTCCTT
AGTCAGTAATAGTTATCATTCGGGCGGTGGCGGCAGTTATGGATTTGCAA
TGCCGCCCCATGCATTTAGGAACACTATATCATATTTaattccaatccaa
accatgagattaaccagggatcacatgcttgttttc
Run BLAST on NCBI

protein sequence of TCONS_00027502-protein

>TCONS_00027502-protein ID=TCONS_00027502-protein|Name=TCONS_00027502-protein|organism=Clytia hemisphaerica|type=polypeptide|length=278bp
RKNHMKFINNVTIYNLHNNKTTEDQKMVHGDESLNLLLFGLAAFTIVLIF
VFFMVYRLLGCRLSCWMYGIRIRFKKKRKRKCIRYKKFTNIDPKSMENSL
DVGNSVSIDNIDNKLCCLALYWDKDDDETEVILPNSHRVTYGEFQPPTQT
TERFIDCCCACVERFPQQPKNDTCPICLDFFTQNTSLVLLNCSHGYHDKC
LTDWLKANSVSYVQCPICKRGMHVEGFGEEYSLVSNSYHSGGGGSYGFAM
PPHAFRNTISYLIPIQTMRLTRDHMLVF
Run BLAST on NCBI

transcript from alignment at sc0000631:18072..19508+

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027502 ID=TCONS_00027502|Name=TCONS_00027502|organism=Clytia hemisphaerica|type=transcript|length=1437bp|location=Sequence derived from alignment at sc0000631:18072..19508+ (Clytia hemisphaerica)
GGCGAAAAAATCACATGAAATTCATAAACAACGTTACTATATACAATCtt
cacaacaacaaaacaacagAAGATCAAAAAATGGTTCACGGCGACGAGTC
gttaaatttacttttatttggTTTAGCTGCGTTTACTATTGTTTTGATAT
TTGTATTCTTTATGGTATATCGTTTACTCGGTTGCCGGCTAAGTTGTTGG
ATGTACGGCATCCGGATTAGATTTAagaaaaaacgaaaacgaaagtgtat
ACGGTATAAAAAATTTACCAATATTGATCCGAAAAGTATGGAAAATAGTT
TGGATGTTGGTAACTCAGTATCGATAGATAATATTGATAATAAGTTATGT
TGTTTGGCTTTGTATTGGGATAAAGATGATGACGAGACGGAAGTAATTTT
ACCGAATTCTCATCGAGTGACTTATGGTGAATTTCAACCACCTACGCAAA
CAACGGAACGCTTTATAGATTGCTGTTGCGCATGCGTAGAACGGTTTCCA
CAGCAACCTAAAAACGATACATGCCCGATATGCTTGGATTTTTTTACCCA
GAATACATCACTAGTGTTGTTAAATTGTTCCCATGGTTACCACGATAAAT
GTTTGACTGATTGGTTGAAAGCGAACAGTGTTTCATACGTGCAATGCCCG
ATCTGCAAACGTGGTATGCACGTTGAGGGGTTTGGGGAAGAGTATTCCTT
AGTCAGTAATAGTTATCATTCGGGCGGTGGCGGCAGTTATGGATTTGCAA
TGCCGCCCCATGCATTTAGGAACACTATATCATATTTGTAAATAGTTTCT
TTGAAGAGCTTGAGATTTGATTGGCGGATGTTCTGAAGATGAGCTATTGC
GTTTGTATCCAagcaaactcgaacccagtcctttAGCTCACTTTTTATGT
CTCTGAAAACGCTCACAAAAGGTACGGTTGTACCAACGTCCACCAGTata
aaatcgtaaaaaaagTGACGTGattggctctgggtacgagactGGAATCT
AAAATATTTATATTCGAGGGCTTTCTTTGATTATCAAAAACAGGCTATGA
ATCTAATTATTCTGACTTCTGAAATAAACTAATTTTTTGAGTCAATTGAC
CAGCGAGTTGCCAAAAAAGACCACGATACACTGTAGGCCTTTCGGATATC
TACTTGACTAAGAATTTTTTAGTGTGTCATATTGTGAATAtattgttata
tatttttttaatgtttttatatacaaatttaattttcgattttccgAAAC
ATAAACATACAGATGTCGAACAAACAGAGGCTGATCTGATGGCGAACTTG
TAATTTTCCTCCTAGATTTTgcaatttcccgcaaaagtgaaatttccatc
gtttggaaattcatcacctttttcgattttttttttagaattccaatcca
aaccatgagattaaccagggatcacatgcttgttttc

Coding sequence (CDS) from alignment at sc0000631:18072..19508+

>TCONS_00027502 ID=TCONS_00027502|Name=TCONS_00027502|organism=Clytia hemisphaerica|type=CDS|length=1668bp|location=Sequence derived from alignment at sc0000631:18072..19508+ (Clytia hemisphaerica)
CGAAAAAATCACATGAAATTCATAAACAACGTTACTATATACAATCttca
caacaacaaaacaacagAAGATCAAAAAATGGTTCACGGCGACGAGTCgt
taaatttacttttatttggTTTAGCTGCGTTTACTATTGTTTTGATATTT
GTATTCTTTATGGTATATCGTTTACTCGGTTGCCGGCTAAGTTGTTGGAT
GTACGGCATCCGGATTAGATTTAagaaaaaacgaaaacgaaagtgtatAC
GGTATAAAAAATTTACCAATATTGATCCGAAAAGTATGGAAAATAGTTTG
GATGTTGGTAACTCAGTATCGATAGATAATATTGATAATAAGTTATGTTG
TTTGGCTTTGTATTGGGATAAAGATGATGACGAGACGGAAGTAATTTTAC
CGAATTCTCATCGAGTGACTTATGGTGAATTTCAACCACCTACGCAAACA
ACGGAACGCTTTATAGATTGCTGTTGCGCATGCGTAGAACGGTTTCCACA
GCAACCTAAAAACGATACATGCCCGATATGCTTGGATTTTTTTACCCAGA
ATACATCACTAGTGTTGTTAAATTGTTCCCATGGTTACCACGATAAATGT
TTGACTGATTGGTTGAAAGCGAACAGTGTTTCATACGTGCAATGCCCGAT
CTGCAAACGTGGTATGCACGTTGAGGGGTTTGGGGAAGAGTATTCCTTAG
TCAGTAATAGTTATCATTCGGGCGGTGGCGGCAGTTATGGATTTGCAATG
CCGCCCCATGCATTTAGGAACACTATATCATATTTaattccaatccaaac
catgagattaaccagggatcacatgcttgttttcCGAAAAAATCACATGA
AATTCATAAACAACGTTACTATATACAATCttcacaacaacaaaacaaca
gAAGATCAAAAAATGGTTCACGGCGACGAGTCgttaaatttacttttatt
tggTTTAGCTGCGTTTACTATTGTTTTGATATTTGTATTCTTTATGGTAT
ATCGTTTACTCGGTTGCCGGCTAAGTTGTTGGATGTACGGCATCCGGATT
AGATTTAagaaaaaacgaaaacgaaagtgtatACGGTATAAAAAATTTAC
CAATATTGATCCGAAAAGTATGGAAAATAGTTTGGATGTTGGTAACTCAG
TATCGATAGATAATATTGATAATAAGTTATGTTGTTTGGCTTTGTATTGG
GATAAAGATGATGACGAGACGGAAGTAATTTTACCGAATTCTCATCGAGT
GACTTATGGTGAATTTCAACCACCTACGCAAACAACGGAACGCTTTATAG
ATTGCTGTTGCGCATGCGTAGAACGGTTTCCACAGCAACCTAAAAACGAT
ACATGCCCGATATGCTTGGATTTTTTTACCCAGAATACATCACTAGTGTT
GTTAAATTGTTCCCATGGTTACCACGATAAATGTTTGACTGATTGGTTGA
AAGCGAACAGTGTTTCATACGTGCAATGCCCGATCTGCAAACGTGGTATG
CACGTTGAGGGGTTTGGGGAAGAGTATTCCTTAGTCAGTAATAGTTATCA
TTCGGGCGGTGGCGGCAGTTATGGATTTGCAATGCCGCCCCATGCATTTA
GGAACACTATATCATATTTaattccaatccaaaccatgagattaaccagg
gatcacatgcttgttttc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015501XLOC_015501Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027502-proteinTCONS_00027502-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027502-exon-sc0000631-1491911889:18072..18858TCONS_00027502-exon-sc0000631-1491911889:18072..18858Clytia hemisphaericaexon
TCONS_00027502-exon-sc0000631-1510915933:18072..18858TCONS_00027502-exon-sc0000631-1510915933:18072..18858Clytia hemisphaericaexon
TCONS_00027502-exon-sc0000631-1575043694:18072..18858TCONS_00027502-exon-sc0000631-1575043694:18072..18858Clytia hemisphaericaexon
TCONS_00027502-exon-sc0000631-1491911889:19460..19508TCONS_00027502-exon-sc0000631-1491911889:19460..19508Clytia hemisphaericaexon
TCONS_00027502-exon-sc0000631-1510915933:19460..19508TCONS_00027502-exon-sc0000631-1510915933:19460..19508Clytia hemisphaericaexon
TCONS_00027502-exon-sc0000631-1575043694:19460..19508TCONS_00027502-exon-sc0000631-1575043694:19460..19508Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000631supercontigsc0000631:18072..19508 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.260471	0.77217	3.05604	3.53228	9.65093	6.71499	11.5063	6.72062	4.13937	2.72036	2.62583	3.00815	3.99596	2.20806	2.7685	2.75713	2.13017	2.01969	6.11206	4.27857	1.10729	0.52267	2.82294	2.87377	0.363998	0.682836	0.155174	0.18133	1.46564	1.41214
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027502 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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