TCONS_00027500 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027500
Unique NameTCONS_00027500
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length270

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027500 ID=TCONS_00027500|Name=TCONS_00027500|organism=Clytia hemisphaerica|type=transcript|length=270bp
ACACTTGCTTCCCATCCATCAAAAACGAGAAACCAACTTTTCAAGATATT
GGTTTTCATTGCCGTGGTCGTACAGCGTAAAGCTATTCAcagtattttga
tgaaaattatccTAGTAAGTGCATTCGCAGCTCGATTTTCTGTCTTCCCG
AAATCTTTCTCTCACTCACTCAGCCagagtccaaaggtcgaaaaatatca
agaatcttgatatttttcatttaactgtaccagggccctaaacgattcct
ccaattatacggtactggcc
Run BLAST on NCBI

transcript from alignment at sc0000630:195121..195390

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027500 ID=TCONS_00027500|Name=TCONS_00027500|organism=Clytia hemisphaerica|type=transcript|length=270bp|location=Sequence derived from alignment at sc0000630:195121..195390 (Clytia hemisphaerica)
ggccagtaccgtataattggaggaatcgtttagggccctggtacagttaa
atgaaaaatatcaagattcttgatatttttcgacctttggactctGGCTG
AGTGAGTGAGAGAAAGATTTCGGGAAGACAGAAAATCGAGCTGCGAATGC
ACTTACTAggataattttcatcaaaatactgTGAATAGCTTTACGCTGTA
CGACCACGGCAATGAAAACCAATATCTTGAAAAGTTGGTTTCTCGTTTTT
GATGGATGGGAAGCAAGTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015500XLOC_015500Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027500-exon-sc0000630-1491911889:195121..195390TCONS_00027500-exon-sc0000630-1491911889:195121..195390Clytia hemisphaericaexon
TCONS_00027500-exon-sc0000630-1510915933:195121..195390TCONS_00027500-exon-sc0000630-1510915933:195121..195390Clytia hemisphaericaexon
TCONS_00027500-exon-sc0000630-1575043694:195121..195390TCONS_00027500-exon-sc0000630-1575043694:195121..195390Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000630supercontigsc0000630:195121..195390 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.13345	1.65794	0	1.25556	2.09267	3.62358	1.45723	2.04636	0.76238	0.837517	0	0.60253	0.376912	2.34856	0	0.345347	0	0	0	0	2.73972	2.40541	0	1.18152	3.65081	4.24858	1.55419	0	1.88707	1.28175
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027500 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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