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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027488 ID=TCONS_00027488|Name=TCONS_00027488|organism=Clytia hemisphaerica|type=transcript|length=4844bpRun BLAST on NCBI protein sequence of TCONS_00027488-protein >TCONS_00027488-protein ID=TCONS_00027488-protein|Name=TCONS_00027488-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1577bp MVDKTAPSTQLRLEWVYGYRGHQCRNNLFYTSKQEIVYFVAGVGVVYEPRRun BLAST on NCBI transcript from alignment at sc0000630:140095..170019- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00027488 ID=TCONS_00027488|Name=TCONS_00027488|organism=Clytia hemisphaerica|type=transcript|length=29925bp|location=Sequence derived from alignment at sc0000630:140095..170019- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000630:140095..170019- >TCONS_00027488 ID=TCONS_00027488|Name=TCONS_00027488|organism=Clytia hemisphaerica|type=CDS|length=137199bp|location=Sequence derived from alignment at sc0000630:140095..170019- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00027488 vs. Swiss-Prot (Human)
Match: EMAL6 (Echinoderm microtubule-associated protein-like 6 OS=Homo sapiens GN=EML6 PE=2 SV=2) HSP 1 Score: 1947.55 bits (5044), Expect = 0.000e+0 Identity = 928/1586 (58.51%), Postives = 1202/1586 (75.79%), Query Frame = 1
Query: 112 MVDKTAPSTQLRLEWVYGYRGHQCRNNLFYTSKQEIVYFVAGVGVVYEPRYQKQRFFFGHDDDILSLALHPEGRLVATGQTGKEPYICVWDSETCKTISILKDSHQRGIACLAFSPNGMQLGSVGLEDYSQITIWDWKKGKAVATARGHSDRIFDICFNPFEEAALVTCGVKHVKMWTLSGNTLTGKKGIFGKLGEIQSVLCLAFGVGGVLYTGTLSGDIYKWQGVTLVQNISGAHAGGVFTLNATADGYASGSKDGTVALWDTEFKPITRIDLNKHSLGYSGISIRSVCWDGEKVLVGTNGGEIFEVAAADKTKPTNLIQGHAEGELWGLASHPKKLVFATASDDRTIRLWDMTSRSLIGKTAFNVTTRSAAFAPDGSTLAVGHGNGSFRVLKGRDLSELLHIHDRKEVIHELKYSPDGSLLAVGSNENSIDIYSVLEKYKRVGQCKGNSSYITHIDWSEDSAYIQTNSGAAERLFYKMPNGKRVTRKEEIESIHWQTWTSVLGAEVNGIWEKYTDTTDVNASDTNFQHGVIVTGDDFGLVKLFRFPCIKKGAKFRRYTGHSAHVTNVRFTADGMHVITTGGADHAIFQWKFIPEGYVEDGDSDSGASLPDGGAQLDSNDEAXXXXXXXXXXXXXXIEGEVSKDYQRDIYKEDMPKLKQKLKTMGDKENGTKKARPDAPKNGVKLSFVFGYRGYDCRNNLFYTQSGEIVYHVAAVGIVYKHETHAQKFYLGHDDDILSLTLHPIKDLVATGQIGREPTIHIWDVEKLEAVSILKGHHTHGVCAIDFTADGKRLVSVGLDQHHSIVVWDWKRGEKLATARGHKDKIFEVRCDPNNIDSLVTVGVRHIKFWTIAGGGLTSKRGTYGDVGKAETQLCVTHPKEAGTLVTGAANGKLYVWQNEVLKTCVAAHEGPVFALHALEKGYVSGGKDGVVRLWDENLSRCLKTYKLNRSSLATGQPKDVLVHDNPAIRAVTLGQGKILVGTKNGEICEIDKSGPITSLVQGHCEGEIWGLAYHPTEHQVATISDDKTVRIWDLE---KFLLIRGKVLAKPGRCVAFSPDGKYLALGFNDGSFSVVDSEKFEEVANYHHRKEEIADIKFSPGEGKYLAVASHENYVDIYNVLTKSRVGVCKGASSYITHIDWDQRGKLLQVNTGAREVLYFEAPRGKRQAINSTELDKITWSSWTCVLGKTCEGIWAPRCDVTDINAADLTKDGQMLATGDDFGFVKLFNYPTKGKNAKCKKYNGHSAHVTNVRWSHDDKYLVSIGGADTSVMVW--QSLDYEETLTNDTGNESEEDTDEETGYDSDVEREKNIDYSTKIYTHPIRAQATNGNVVKPQEQSTKV---DSKKVSRGNSSQAKIEHKDHSDGKRKRKHEFNELELEFILGYRGFDTRNNLHFSSDGS-LVYHAAGAGIVHDTQTQEQTFYLEHTDDIICMCSNQNPKFKNIVATGQIGTNPTIHVWQTTNKQTLSIIQGFHKKGVCSVNFSSSGRYLVSVGIDDEHSIAVYKWADGTNVASAPGHTRRIFVAEFRPDSDTTFVTCGVKHVKWWSVKGGTLVSKTANLSTYEGGSDPQMQTMLSVAFG 4842
M D+TAP QLRLEWVYGYRGHQCRNNL+YT+ +E+VYFVAGVGVVY R Q+FF GH+DDI+SLALHP+ LVATGQ GKEPYIC+WDS +T+S+LKD H G+ACLAF +G +L SVGL+ + + IWDW+KGK +A+A GHSDRIFDI ++P++ +V+CGVKH+K WTL GN LT K+GIFGK G++Q++LCLA + Y+G L+GDIY W+G+ LV+ I GAH+ G+F++ A +G+A+G +DG + LWDT+FKPIT+IDL + GY G+SIRSVCW +++L GT EIFEV ++ KP ++QGH EGELW LA HPKK + T SDDR++RLW + +LI + RS AF+PDGS LA+G +GSF VL+ RD++E++HI DRKEVIHE+K+SPDGS LAVGSN+ +D+Y+V ++YK++G+C + S+ITHIDWS DS Y+QTN GA ERLFY+MP+GK +T KEEI+ I W +WT V G EV+GIW KYT+ TD+N+ D N+ V+V+GDDFGLVKLF+FPC+K+GAKFR+Y GHSAHVTNVR++ D V++TGGADH++FQW+FIPEG V +G ++ +GGA DS E SDSDLSDV LDSDIE E +Y R +YKED+P+LKQ+ K K R AP++ +KL F+ GYRGYDCRNNLFYTQ+GE+VYH+AAV +VY + H+Q+ YLGHDDDILSLT+HP+KD VATGQ+GR+ IH+WD + L+ +S+LKG H GVCA+DF+ADGK LVSVGLD HSIV WDWK+GEK+AT RGHKDKIF V+C+P+++D LVTVG++HIKFW AGGG TSKRGT+G VGK ET +CV++ + + +GAA G +++W++ +L V AH+GPVFA++AL+KG+V+GGKDG+V LWD+ RCLKTY + RS+L+T K +L+ DNP+IRA+TLG G ILVGTKNGEI EIDKSGP+T LVQGH EGE+WGLA HP AT+SDDKT+RIW+L + L +R L K GRC AFSPDGK LA+G NDGSF VV+++ E++ ++HHRKE I+DIKFS GKYLAVASH+N+VDIYNVLT RVG+CKGASSYITHIDWD RGKLLQVN+GARE L+FEAPRGKR I +E++KI W +WTCVLG TCEGIW D+TD+NAA LTKD +LATGDDFGFVKLF+YP KG++A+ KKY GHSAHVTNVRW H+D L+++GGADT++M+W + + +E+ D+ ES+ D +E+ GYDSDV REK IDY+TKIY IR KP +Q +V + VSR K++ + + K+K EL L+ + GYRGFD RNNLH+ +DG+ +++H A AGIV + T Q+FYLEHTDDI+C+ NQ+PK++N+VAT QIGT P+IH+W K TLS+++ FH KGV +NFS++G+ LVSVG+D EH+I V++W +G VAS GH RIFV EFRPDSDT FV+ GVKH+K+W++ G L+ K + + +MQTMLSVAFG
Sbjct: 1 MADRTAPRCQLRLEWVYGYRGHQCRNNLYYTAGKEVVYFVAGVGVVYNTREHSQKFFLGHNDDIISLALHPDKTLVATGQVGKEPYICIWDSYNVQTVSLLKDVHTHGVACLAFDSDGQRLASVGLDAKNTVCIWDWRKGKLLASATGHSDRIFDISWDPYQPNRVVSCGVKHIKFWTLCGNALTAKRGIFGKTGDLQTILCLACAKEDITYSGALNGDIYVWKGLNLVRTIQGAHSAGIFSMYACEEGFATGGRDGCIRLWDTDFKPITKIDLRETEQGYKGLSIRSVCWKADRLLAGTQDSEIFEVIVRERDKPMLILQGHCEGELWALALHPKKPLAVTGSDDRSVRLWSLADHALIARCNMEEAVRSVAFSPDGSQLALGMKDGSFIVLRVRDMTEVVHIKDRKEVIHEMKFSPDGSYLAVGSNDGPVDVYAVAQRYKKIGECSKSLSFITHIDWSLDSKYLQTNDGAGERLFYRMPSGKPLTSKEEIKGIPWASWTCVKGPEVSGIWPKYTEVTDINSVDANYNSSVLVSGDDFGLVKLFKFPCLKRGAKFRKYVGHSAHVTNVRWSHDFQWVLSTGGADHSVFQWRFIPEG-VSNGMLETAPQ--EGGA--DSYSEESDSDLSDVPELDSDIEQEAQINYDRQVYKEDLPQLKQQSKEKNHAVPFLK--REKAPEDSLKLQFIHGYRGYDCRNNLFYTQAGEVVYHIAAVAVVYNRQQHSQRLYLGHDDDILSLTIHPVKDYVATGQVGRDAAIHVWDTQTLKCLSLLKGQHQRGVCALDFSADGKCLVSVGLDDFHSIVFWDWKKGEKIATTRGHKDKIFVVKCNPHHVDKLVTVGIKHIKFWQQAGGGFTSKRGTFGSVGKLETMMCVSYGRMEDLVFSGAATGDIFIWKDILLLKTVKAHDGPVFAMYALDKGFVTGGKDGIVELWDDMFERCLKTYAIKRSALSTSS-KGLLLEDNPSIRAITLGHGHILVGTKNGEILEIDKSGPMTLLVQGHMEGEVWGLAAHPLLPICATVSDDKTLRIWELSAQHRMLAVRK--LKKGGRCCAFSPDGKALAVGLNDGSFLVVNADTVEDMVSFHHRKEMISDIKFSKDTGKYLAVASHDNFVDIYNVLTSKRVGICKGASSYITHIDWDSRGKLLQVNSGAREQLFFEAPRGKRHIIRPSEIEKIEWDTWTCVLGPTCEGIWPAHSDITDVNAASLTKDCSLLATGDDFGFVKLFSYPVKGQHARFKKYVGHSAHVTNVRWLHNDSVLLTVGGADTALMIWTREFVGTQESKLVDS-EESDTDVEEDGGYDSDVAREKAIDYTTKIYAVSIREMEGT----KPHQQLKEVSVEERPPVSRAAPQPEKLQKNNIT----KKKKLVEELALDHVFGYRGFDCRNNLHYLNDGADIIFHTAAAGIVQNLSTGSQSFYLEHTDDILCLTVNQHPKYRNVVATSQIGTTPSIHIWDAMTKHTLSMLRCFHSKGVNYINFSATGKLLVSVGVDPEHTITVWRWQEGAKVASRGGHLERIFVVEFRPDSDTQFVSVGVKHMKFWTLAGSALLYKKGVIGSLGAA---KMQTMLSVAFG 1564 HSP 2 Score: 1025.39 bits (2650), Expect = 0.000e+0 Identity = 573/1321 (43.38%), Postives = 802/1321 (60.71%), Query Frame = 1
Query: 106 PDMVDKTAPSTQLRLEWVYGYRGHQCRNNLFYTSKQEIVYFVAGVGVVYEPRYQKQRFFFGHDDDILSLALHPEGRLVATGQTGKEPYICVWDSETCKTISILKDSHQRGIACLAFSPNGMQLGSVGLEDYSQITIWDWKKGKAVATARGHSDRIFDICFNPFEEAALVTCGVKHVKMWTLSGNTLTGKKGIFGKLGEIQSVLCLAFG-VGGVLYTGTLSGDIYKWQGVTLVQNISGAHAGGVFTLNATADGYASGSKDGTVALWDTEFK------PITRIDLNKHSLGY---SGISIRSVCWDGEKVLVGTNGGEIFEVAAADKTKP-TNLIQGHAEGELWGLASHPKKLVFATASDDRTIRLWDMTSR-SLIGKTAFNVTTRSAAFAPDGSTLAVGHGNGSFRVLKGRDLSELLHIHDRKEVIHELKYSPD-GSLLAVGSNENSIDIYSVLEKYKRVGQCKGNSSYITHIDWSEDSAYIQTNSGAAERLFYKMPNGKR-VTRKEEIESIHWQTWTSVLGAEVNGIWEKYTDTTDVNASDTNFQHGVIVTGDDFGLVKLFRFPCIKKGAKFRRYTGHSAHVTNVRFTADGMHVITTGGADHAIFQW--KFI--PEGYVEDGDSDSGASLPDGGAQLD-SNDEAXXXXXXXXXXXXXXIEGEVSKDYQRDIYKEDMPKLK------QKLKTMGDKENGTKKARPDAPKNGVKLSFVFGYRGYDCRNNLFYTQSG-EIVYHVAAVGIVYKHETHAQKFYLGHDDDILSLTL--HP-IKDLVATGQIGREPTIHIWDVEKLEAVSILKGHHTHGVCAIDFTADGKRLVSVGLDQHHSIVVWDWKRGEKLATARGHKDKIFEVRCDPNNIDSLVTVGVRHIKFWTIAGGGLTSKRGTYGDVGKAETQLCVTHPKEAGTLV-TGAANGKLYVWQNEVLKTCVA-AHEGPVFALH-ALEKGY-VSGGKD------GVVRLWDENLSRCLKTYKLNRSSLATGQPKDVLVHDNPAIRAVTLGQGKILVGTKNGEICEI-DKSGPITSLVQGHCEGEIWGLAYHPTEHQVATISDDKTVRIWDLEKFLLIRGKVLAKPGRCVAFSPDGKYLALGFNDGSFSVVDSEKFEEVANYHHRKEEIADIKFSPGEGKYLAVASHENYVDIYNVLTKS---RVGVCKGASSYITHIDWDQRGKLLQVNTGAREVLYFEAPRGKRQAINSTELDKITWSSWTCVLGKTCEGIWAPRCDVTDINAADLTKDGQMLATGDDFGFVKLFNYPTKGKNAKCKKYNGHSAHVTNVRWSHDDKYLVSIGGADTSVMVWQSL 3939
P + + AP L+L++++GYRG+ CRNNLFYT E+VY +A V VVY + QR + GHDDDILSL +HP VATGQ G++ I VWD++T K +S+LK HQRG+ L FS +G L SVGL+D+ I WDWKKG+ +AT RGH D+IF + NP LVT G+KH+K W +G T K+G FG +G++++++C+++G + ++++G +GDI+ W+ + L++ + AH G VF + A G+ +G KDG V LWD F+ I R L+ S G SIR++ +LVGT GEI E+ DK+ P T L+QGH EGE+WGLA+HP + AT SDD+T+R+W+++++ ++ R AF+PDG LAVG +GSF V+ + +++ H RKE+I ++K+S D G LAV S++N +DIY+VL KRVG CKG SSYITHIDW +Q NSGA E+LF++ P GKR + R EIE I W TWT VLG GIW ++D TDVNA+ ++ TGDDFG VKLF +P + A+F++Y GHSAHVTNVR+ + ++T GGAD A+ W +F+ E + D + DGG D + ++A D ++EG +++ E+ P + +KL+ K N TKK + + L VFGYRG+DCRNNL Y G +I++H AA GIV T +Q FYL H DDIL LT+ HP +++VAT QIG P+IHIWD +S+L+ H+ GV I+F+A GK LVSVG+D H+I VW W+ G K+A+ GH ++IF V P++ V+VGV+H+KFWT+AG L K+G G +G A+ Q ++ A L TGA NG +YVW++ L VA AH GPVF ++ L G V+GGK+ G V+LWD+ + RC + ++L TGQ LV +R+V G+GKILVGTK+GEI E+ +K+ L+ GH EGEIWGLA HP++ + S+D T RIWDL L+ L RC A+SPDG+ +A+G +G F ++ + RK I DI+ SP + ++LAV S E+ VD Y++ + R+G CK S++ +D+ GK +QV+TGA + E P GK Q + ++KITW+SWT VLG GIW D D+N A +T G + TGDDFG VKLF++P K AK K+Y GHSAHVTN+R+S+DDKY+VS GG D SV VW+ L
Sbjct: 665 PFLKREKAPEDSLKLQFIHGYRGYDCRNNLFYTQAGEVVYHIAAVAVVYNRQQHSQRLYLGHDDDILSLTIHPVKDYVATGQVGRDAAIHVWDTQTLKCLSLLKGQHQRGVCALDFSADGKCLVSVGLDDFHSIVFWDWKKGEKIATTRGHKDKIFVVKCNPHHVDKLVTVGIKHIKFWQQAGGGFTSKRGTFGSVGKLETMMCVSYGRMEDLVFSGAATGDIFIWKDILLLKTVK-AHDGPVFAMYALDKGFVTGGKDGIVELWDDMFERCLKTYAIKRSALSTSSKGLLLEDNPSIRAITLGHGHILVGTKNGEILEI---DKSGPMTLLVQGHMEGEVWGLAAHPLLPICATVSDDKTLRIWELSAQHRMLAVRKLKKGGRCCAFSPDGKALAVGLNDGSFLVVNADTVEDMVSFHHRKEMISDIKFSKDTGKYLAVASHDNFVDIYNVLTS-KRVGICKGASSYITHIDWDSRGKLLQVNSGAREQLFFEAPRGKRHIIRPSEIEKIEWDTWTCVLGPTCEGIWPAHSDITDVNAASLTKDCSLLATGDDFGFVKLFSYPVKGQHARFKKYVGHSAHVTNVRWLHNDSVLLTVGGADTALMIWTREFVGTQESKLVDSEESDTDVEEDGGYDSDVAREKAIDYTTKIYAVSIREMEGTKPHQQLKEVSVEERPPVSRAAPQPEKLQ----KNNITKKKK---LVEELALDHVFGYRGFDCRNNLHYLNDGADIIFHTAAAGIVQNLSTGSQSFYLEHTDDILCLTVNQHPKYRNVVATSQIGTTPSIHIWDAMTKHTLSMLRCFHSKGVNYINFSATGKLLVSVGVDPEHTITVWRWQEGAKVASRGGHLERIFVVEFRPDSDTQFVSVGVKHMKFWTLAGSALLYKKGVIGSLGAAKMQTMLSVAFGANNLTFTGAINGDVYVWKDHFLIRLVAKAHTGPVFTMYTTLRDGLIVTGGKERPTKEGGAVKLWDQEMKRC-RAFQLE-----TGQ----LVE---CVRSVCRGKGKILVGTKDGEIIEVGEKNAASNILIDGHMEGEIWGLATHPSKDLFISASNDGTARIWDLADKKLLNKVSLGHAARCAAYSPDGEMVAIGMKNGEFVILLVNSLKVWGKKRDRKSAIQDIRISP-DNRFLAVGSSEHTVDFYDLTQGTNLNRIGYCKDIPSFVIQMDFSADGKYIQVSTGAYKRQVHEVPLGK-QVTEAVVIEKITWASWTSVLGDEVIGIWPRNADKADVNCACVTHAGLNIVTGDDFGLVKLFDFPCTEKFAKHKRYFGHSAHVTNIRFSYDDKYVVSTGGDDCSVFVWRCL 1958 The following BLAST results are available for this feature:
BLAST of TCONS_00027488 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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