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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027483 ID=TCONS_00027483|Name=TCONS_00027483|organism=Clytia hemisphaerica|type=transcript|length=607bp
CCACGGTAACAAGCAGCACAATAAAGCAATTTACTGTTGTTCTCTTACTT
GCAATCGCACATGGAATGGAAAGTAGACCAGCAATAGACGGTGATATAAA
ACCGTCGCCGGCAATTCAGACAGTAGAAGTGTATTATACAGAACCAAAAG
GATGTTATGacgaaaattggaaattttatttACCAGGAGAAGTTATGAGT
AAACATTATGATGAGAAAACAAATAGTTGTAGTGGTGTGAAATGCGGAGC
CGACGGTGTTGCTTATGCTTGGGATGGTGTCAATTGCAAAGATAAGAAAA
TTGTCgatatgttttaattttttgaaatatttaggtTCTCTGGAAACTGc
ttattttttgtccattttatcaTAGCTAAGAATTTCATTATTGTAAATAG
TAATTTATTGAAGTTTCTCTGTAGTTTTTTTGTTGTGTTATCCCGTCTGT
AGTAAAAGGTTGCTTAGGGTAGCAGTTTTTAATGAGAAATTTTGCTTAAG
TGGTCTTCCAACAGTAAGAATAAAACGTTCTCAttataaagttttctttt
gacGATTTCTCACAGAATGTTTTAGAGAAATACTGCTGAATATCAAAAGA
TGATGTT Run BLAST on NCBI protein sequence of TCONS_00027483-protein >TCONS_00027483-protein ID=TCONS_00027483-protein|Name=TCONS_00027483-protein|organism=Clytia hemisphaerica|type=polypeptide|length=104bp
TVTSSTIKQFTVVLLLAIAHGMESRPAIDGDIKPSPAIQTVEVYYTEPKG
CYDENWKFYLPGEVMSKHYDEKTNSCSGVKCGADGVAYAWDGVNCKDKKI
VDMF Run BLAST on NCBI transcript from alignment at sc0000630:167671..168534+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027483 ID=TCONS_00027483|Name=TCONS_00027483|organism=Clytia hemisphaerica|type=transcript|length=864bp|location=Sequence derived from alignment at sc0000630:167671..168534+ (Clytia hemisphaerica)
CCACGGTAACAAGCAGCACAATAAAGCAATGTAACatacaggtttttttt
ttataagaacatccaaaattttgaagccttttttagctttaagcctaaaa
atattcttaacatattcttattatccccatttttttagtattcttgtcca
ttttcttaaggaattgggtgttttagagtccacaaaaccttaaaatgttc
ttaacattttgcccatcgaagccttatgtttttatatagtttccATTAAC
CATCCATCATCtaaaaaccataaaactctTTTTTTAGTTACTGTTGTTCT
CTTACTTGCAATCGCACATGGAATGGAAAGTAGACCAGCAATAGACGGTG
ATATAAAACCGTCGCCGGCAATTCAGACAGTAGAAGTGTATTATACAGAA
CCAAAAGGATGTTATGacgaaaattggaaattttatttACCAGGAGAAGT
TATGAGTAAACATTATGATGAGAAAACAAATAGTTGTAGTGGTGTGAAAT
GCGGAGCCGACGGTGTTGCTTATGCTTGGGATGGTGTCAATTGCAAAGAT
AAGAAAATTGTCgatatgttttaattttttgaaatatttaggtTCTCTGG
AAACTGcttattttttgtccattttatcaTAGCTAAGAATTTCATTATTG
TAAATAGTAATTTATTGAAGTTTCTCTGTAGTTTTTTTGTTGTGTTATCC
CGTCTGTAGTAAAAGGTTGCTTAGGGTAGCAGTTTTTAATGAGAAATTTT
GCTTAAGTGGTCTTCCAACAGTAAGAATAAAACGTTCTCAttataaagtt
ttcttttgacGATTTCTCACAGAATGTTTTAGAGAAATACTGCTGAATAT
CAAAAGATGATGTT Coding sequence (CDS) from alignment at sc0000630:167671..168534+ >TCONS_00027483 ID=TCONS_00027483|Name=TCONS_00027483|organism=Clytia hemisphaerica|type=CDS|length=630bp|location=Sequence derived from alignment at sc0000630:167671..168534+ (Clytia hemisphaerica)
ACGGTAACAAGCAGCACAATAAAGCAATTTACTGTTGTTCTCTTACTTGC
AATCGCACATGGAATGGAAAGTAGACCAGCAATAGACGGTGATATAAAAC
CGTCGCCGGCAATTCAGACAGTAGAAGTGTATTATACAGAACCAAAAGGA
TGTTATGacgaaaattggaaattttatttACCAGGAGAAGTTATGAGTAA
ACATTATGATGAGAAAACAAATAGTTGTAGTGGTGTGAAATGCGGAGCCG
ACGGTGTTGCTTATGCTTGGGATGGTGTCAATTGCAAAGATAAGAAAATT
GTCgatatgttttaaACGGTAACAAGCAGCACAATAAAGCAATTTACTGT
TGTTCTCTTACTTGCAATCGCACATGGAATGGAAAGTAGACCAGCAATAG
ACGGTGATATAAAACCGTCGCCGGCAATTCAGACAGTAGAAGTGTATTAT
ACAGAACCAAAAGGATGTTATGacgaaaattggaaattttatttACCAGG
AGAAGTTATGAGTAAACATTATGATGAGAAAACAAATAGTTGTAGTGGTG
TGAAATGCGGAGCCGACGGTGTTGCTTATGCTTGGGATGGTGTCAATTGC
AAAGATAAGAAAATTGTCgatatgttttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027483-exon-sc0000630-1491911889:167671..167700 | TCONS_00027483-exon-sc0000630-1491911889:167671..167700 | Clytia hemisphaerica | exon |
| TCONS_00027483-exon-sc0000630-1510915933:167671..167700 | TCONS_00027483-exon-sc0000630-1510915933:167671..167700 | Clytia hemisphaerica | exon |
| TCONS_00027483-exon-sc0000630-1575043694:167671..167700 | TCONS_00027483-exon-sc0000630-1575043694:167671..167700 | Clytia hemisphaerica | exon |
| TCONS_00027483-exon-sc0000630-1491911889:167958..168534 | TCONS_00027483-exon-sc0000630-1491911889:167958..168534 | Clytia hemisphaerica | exon |
| TCONS_00027483-exon-sc0000630-1510915933:167958..168534 | TCONS_00027483-exon-sc0000630-1510915933:167958..168534 | Clytia hemisphaerica | exon |
| TCONS_00027483-exon-sc0000630-1575043694:167958..168534 | TCONS_00027483-exon-sc0000630-1575043694:167958..168534 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000630 | supercontig | sc0000630:167671..168534 + |
Blast
The following BLAST results are available for this feature:
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