TCONS_00027476 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027476
Unique NameTCONS_00027476
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length825

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027476 ID=TCONS_00027476|Name=TCONS_00027476|organism=Clytia hemisphaerica|type=transcript|length=825bp
CTTTTTCAAGAGAATTTGGTGGTCGACAGTATCGAATGCCTTTTTAAGGT
CGACAAGAACAGCCCCTACATATTTTCCATTTGCTAACTCGTCAAGAATG
AAATCGGAAACGCAGATAACTGCAGTGTCCGTTGAGTGTCCGTATCGAAA
TCCTAATTGTGATGGATTCAGGATCTTATTGTTGTCAAGGAAAGTCGAAA
CTTGTTCATGAACTACTTTCTCAAAAACCTTCATAGTGATTGGGAGGATG
GAGATCGGTCTGTAGTTATTGACACTGTCCACTTCACCTTTTTTGAACAC
AGGGGTTACCCTTTTTTGTTTCCAAGTTTCTGGGACAGCCCCTGTTCTAA
GAGACAGATTGAAGATGTGAGAAAGGTAGAACGAGAGGATAGGAGAACCA
AGCTTCAGTGATTTGACACAAATACCATCTAGTCCTGTAGATTTATCATT
ATCTAGCTCCTTAATCAATTTTTGTACAGTCGCCAGAGAGACATTACTGA
AGATGAAGGAATTAGGGCAGACAGACGGACAGATGTGATCAGTACGACAG
AAGTTAAAAGCAGCTGCTAACTTTGAGCCAACTGAGACAAAGAAGGAATT
GAATTTTTCAGCAATTTCTTTACTGTCAGAAATTTCGACCCCTTTATCAT
CTGTGATGAATTGGGGTGAGTTGTTTGATTTCTTGTCATTTGGGACAAGA
TTATTTAGAGTTTTCCAAAGTTTCTTGGAATTTGACTTGTTTTCGATTAT
AGATCCTCCACCGATTATAGATCCTCCACCGAACGAAGACAAAAGAGGTC
GATGTCGTCATTTCGATTGAATTTA
Run BLAST on NCBI

transcript from alignment at sc0000628:52871..53695

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027476 ID=TCONS_00027476|Name=TCONS_00027476|organism=Clytia hemisphaerica|type=transcript|length=825bp|location=Sequence derived from alignment at sc0000628:52871..53695 (Clytia hemisphaerica)
TAAATTCAATCGAAATGACGACATCGACCTCTTTTGTCTTCGTTCGGTGG
AGGATCTATAATCGGTGGAGGATCTATAATCGAAAACAAGTCAAATTCCA
AGAAACTTTGGAAAACTCTAAATAATCTTGTCCCAAATGACAAGAAATCA
AACAACTCACCCCAATTCATCACAGATGATAAAGGGGTCGAAATTTCTGA
CAGTAAAGAAATTGCTGAAAAATTCAATTCCTTCTTTGTCTCAGTTGGCT
CAAAGTTAGCAGCTGCTTTTAACTTCTGTCGTACTGATCACATCTGTCCG
TCTGTCTGCCCTAATTCCTTCATCTTCAGTAATGTCTCTCTGGCGACTGT
ACAAAAATTGATTAAGGAGCTAGATAATGATAAATCTACAGGACTAGATG
GTATTTGTGTCAAATCACTGAAGCTTGGTTCTCCTATCCTCTCGTTCTAC
CTTTCTCACATCTTCAATCTGTCTCTTAGAACAGGGGCTGTCCCAGAAAC
TTGGAAACAAAAAAGGGTAACCCCTGTGTTCAAAAAAGGTGAAGTGGACA
GTGTCAATAACTACAGACCGATCTCCATCCTCCCAATCACTATGAAGGTT
TTTGAGAAAGTAGTTCATGAACAAGTTTCGACTTTCCTTGACAACAATAA
GATCCTGAATCCATCACAATTAGGATTTCGATACGGACACTCAACGGACA
CTGCAGTTATCTGCGTTTCCGATTTCATTCTTGACGAGTTAGCAAATGGA
AAATATGTAGGGGCTGTTCTTGTCGACCTTAAAAAGGCATTCGATACTGT
CGACCACCAAATTCTCTTGAAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015481XLOC_015481Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027476-exon-sc0000628-1491911889:52871..53695TCONS_00027476-exon-sc0000628-1491911889:52871..53695Clytia hemisphaericaexon
TCONS_00027476-exon-sc0000628-1510915933:52871..53695TCONS_00027476-exon-sc0000628-1510915933:52871..53695Clytia hemisphaericaexon
TCONS_00027476-exon-sc0000628-1575043694:52871..53695TCONS_00027476-exon-sc0000628-1575043694:52871..53695Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000628supercontigsc0000628:52871..53695 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.287969	0.786282	1.13488	1.40356	0.828025	0.523453	0.666413	0.277283	0.825063	0.625027	0.350101	1.07034	1.22572	0.815063	0.228925	0.835421	0.0864708	0.455065	1.1277	1.32751	1.00233	1.05928	0.198108	0	0.865702	1.54524	1.79875	0.858247	1.15064	1.17232
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027476 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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