TCONS_00027463 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027463
Unique NameTCONS_00027463
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length867

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027463 ID=TCONS_00027463|Name=TCONS_00027463|organism=Clytia hemisphaerica|type=transcript|length=867bp
GGGAGCGCTAAATTCGATCATGTCCCTCCATCCTGACGTCACTACTGAAT
AATCACAGCCAAAGTTTGAACGACGAGAGCTTCAATACAGTTTTGACAGA
GGTTGAGACTATTGTGAACAGTCGTCCATTGTCAGTAGAGGTATTGAGTG
ACAGCAATAGCTTAGTTCCACTGACCCCAAATCAACTGTTGACATCAAAG
ACGAAGATCGTGATGGCACCACCTGGTCAGTTCACTGAAGCCGACATCTA
CAGTCGTCGTCGATGGAGAAGAGTGCAACACCTCGTCAATGAGTTTTGGT
CACGCTGGCGATCAGAATATCTACAATCACTACAACCCAGACGAAAGTGG
AATCAACCAAGACGTAACTTTGTTGTAAACGACGTCGTGCTCATCAAAGA
CGATTCGATTCAACGCAATGATTGGCGACTCGGTCGTGTTACTAGCGTAA
AGACAGGAGATGACGGCAACGTGCGCAGTGTAGTCGTGCAAACGTCGAAG
CGCAAAGAATACGAACGACCAATTGCAAAGATCGTTCTGTTAGTTGAAAG
CAACGTAATTAACGAATCCCCGTCAAGGAGCCATATTCAATAATCTTTGT
ATGAGAAGTGAATGAACTGAAATTCACTAGTATTTATTGATTGCGAATGA
ACTGAAATTCGCTCACGATGTTGATTGATTGCTATTATGAATAAAAGTAT
GTCATAAAGGGCACATTGAACTTGAATGTTTCAATTGGTTTATGGTATAC
AAGAAAAGatagttatcaaaaaaaatttgttaaatATTTGTAGAAAATGA
ATTTGTCAATATATTTATAGTATTTATAGGTGAAAATGAATTTGTTAAGA
TTTTGTAGAATCTTGAG
Run BLAST on NCBI

protein sequence of TCONS_00027463-protein

>TCONS_00027463-protein ID=TCONS_00027463-protein|Name=TCONS_00027463-protein|organism=Clytia hemisphaerica|type=polypeptide|length=126bp
MAPPGQFTEADIYSRRRWRRVQHLVNEFWSRWRSEYLQSLQPRRKWNQPR
RNFVVNDVVLIKDDSIQRNDWRLGRVTSVKTGDDGNVRSVVVQTSKRKEY
ERPIAKIVLLVESNVINESPSRSHIQ
Run BLAST on NCBI

transcript from alignment at sc0000627:168232..169098

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027463 ID=TCONS_00027463|Name=TCONS_00027463|organism=Clytia hemisphaerica|type=transcript|length=867bp|location=Sequence derived from alignment at sc0000627:168232..169098 (Clytia hemisphaerica)
CTCAAGATTCTACAAAATCTTAACAAATTCATTTTCACCTATAAATACTA
TAAATATATTGACAAATTCATTTTCTACAAATatttaacaaatttttttt
gataactatCTTTTCTTGTATACCATAAACCAATTGAAACATTCAAGTTC
AATGTGCCCTTTATGACATACTTTTATTCATAATAGCAATCAATCAACAT
CGTGAGCGAATTTCAGTTCATTCGCAATCAATAAATACTAGTGAATTTCA
GTTCATTCACTTCTCATACAAAGATTATTGAATATGGCTCCTTGACGGGG
ATTCGTTAATTACGTTGCTTTCAACTAACAGAACGATCTTTGCAATTGGT
CGTTCGTATTCTTTGCGCTTCGACGTTTGCACGACTACACTGCGCACGTT
GCCGTCATCTCCTGTCTTTACGCTAGTAACACGACCGAGTCGCCAATCAT
TGCGTTGAATCGAATCGTCTTTGATGAGCACGACGTCGTTTACAACAAAG
TTACGTCTTGGTTGATTCCACTTTCGTCTGGGTTGTAGTGATTGTAGATA
TTCTGATCGCCAGCGTGACCAAAACTCATTGACGAGGTGTTGCACTCTTC
TCCATCGACGACGACTGTAGATGTCGGCTTCAGTGAACTGACCAGGTGGT
GCCATCACGATCTTCGTCTTTGATGTCAACAGTTGATTTGGGGTCAGTGG
AACTAAGCTATTGCTGTCACTCAATACCTCTACTGACAATGGACGACTGT
TCACAATAGTCTCAACCTCTGTCAAAACTGTATTGAAGCTCTCGTCGTTC
AAACTTTGGCTGTGATTATTCAGTAGTGACGTCAGGATGGAGGGACATGA
TCGAATTTAGCGCTCCC

Coding sequence (CDS) from alignment at sc0000627:168232..169098

>TCONS_00027463 ID=TCONS_00027463|Name=TCONS_00027463|organism=Clytia hemisphaerica|type=CDS|length=381bp|location=Sequence derived from alignment at sc0000627:168232..169098 (Clytia hemisphaerica)
TTATTGAATATGGCTCCTTGACGGGGATTCGTTAATTACGTTGCTTTCAA
CTAACAGAACGATCTTTGCAATTGGTCGTTCGTATTCTTTGCGCTTCGAC
GTTTGCACGACTACACTGCGCACGTTGCCGTCATCTCCTGTCTTTACGCT
AGTAACACGACCGAGTCGCCAATCATTGCGTTGAATCGAATCGTCTTTGA
TGAGCACGACGTCGTTTACAACAAAGTTACGTCTTGGTTGATTCCACTTT
CGTCTGGGTTGTAGTGATTGTAGATATTCTGATCGCCAGCGTGACCAAAA
CTCATTGACGAGGTGTTGCACTCTTCTCCATCGACGACGACTGTAGATGT
CGGCTTCAGTGAACTGACCAGGTGGTGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015474XLOC_015474Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027463-proteinTCONS_00027463-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027463-exon-sc0000627-1491911889:168232..169098TCONS_00027463-exon-sc0000627-1491911889:168232..169098Clytia hemisphaericaexon
TCONS_00027463-exon-sc0000627-1510915933:168232..169098TCONS_00027463-exon-sc0000627-1510915933:168232..169098Clytia hemisphaericaexon
TCONS_00027463-exon-sc0000627-1575043694:168232..169098TCONS_00027463-exon-sc0000627-1575043694:168232..169098Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000627supercontigsc0000627:168232..169098 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.54776	1.70094	0.454376	0.353184	1.96732	0.990932	0.271709	0.581756	0.419388	1.05179	0.41245	1.6001	0.367223	0.257079	0.0306162	0	0	0	0.0573155	0	0.0521305	0.152565	0.0625567	0.393429	0	0.471095	0	0	0.0858132	0.121944
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027463 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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