TCONS_00027462 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027462
Unique NameTCONS_00027462
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length815

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027462 ID=TCONS_00027462|Name=TCONS_00027462|organism=Clytia hemisphaerica|type=transcript|length=815bp
tttttgaaaacaatgcGAATTGAAACAAGAATGAAAAATGTTGATTGGAC
TAAATGTATTCTTTGCCAAAAAGCTACGGACGAAGGTTTAAAGGAGACTT
GTAGAAACAACAATAAGGTTTAAGTAAAAAACACATATGAGAATCTCGTG
ACTGCCTTGAACCAATTCCATAGCAATGACGCATTACCTGATACATCCAG
TCCTATCGTTACACATTTGATTGCATACGCAAATCCTTTGTCATTATTGA
ATGACAATAAAGCCAAATGGCACAACTCTTgcaagcttaaagttgcaatg
AGTAAGCTACGGAAACGAAAGCTTCAACCAAAAGAAACTCGAAGCAAAGT
TGCAAAGTTTGACAAGATATATGTTTTGTACCTGGGTGCATTACAACGAC
GACGGAAAACGAGCCGCTTCATGATGTAATGTCCAAAGAGCTTGACACTC
GCTTTCGAGAATATGCATCCATTATGGATGACACAGAGCTCTTGGTGAAA
CTTGCAGGTGGTACATTGACAACTTTAGAGGCTAAATATCATAGCCCATG
CGCGGTAATGTACTATAATCGTGTCGAAGCAAAGGTAAGAGACGAAGAAt
ctgatttcaaaaatgaatttatcTCATCAAGTTGCTAGTTGAAAGTTGCT
ATCATTACTAAGCACAGGAATACAAGAATTAACTGCATGACCTTTGAAGC
TCTAACAATATGCTTGGATCTCCTACTTATggtttttgaactttgtgttA
AGCCATGAACATGGTTAAGCCTATGGACAATAgattttaaaaagaaacaa
atataTAATTATCTT
Run BLAST on NCBI

transcript from alignment at sc0000627:166443..167257

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027462 ID=TCONS_00027462|Name=TCONS_00027462|organism=Clytia hemisphaerica|type=transcript|length=815bp|location=Sequence derived from alignment at sc0000627:166443..167257 (Clytia hemisphaerica)
AAGATAATTAtatatttgtttctttttaaaatcTATTGTCCATAGGCTTA
ACCATGTTCATGGCTTaacacaaagttcaaaaaccATAAGTAGGAGATCC
AAGCATATTGTTAGAGCTTCAAAGGTCATGCAGTTAATTCTTGTATTCCT
GTGCTTAGTAATGATAGCAACTTTCAACTAGCAACTTGATGAgataaatt
catttttgaaatcagaTTCTTCGTCTCTTACCTTTGCTTCGACACGATTA
TAGTACATTACCGCGCATGGGCTATGATATTTAGCCTCTAAAGTTGTCAA
TGTACCACCTGCAAGTTTCACCAAGAGCTCTGTGTCATCCATAATGGATG
CATATTCTCGAAAGCGAGTGTCAAGCTCTTTGGACATTACATCATGAAGC
GGCTCGTTTTCCGTCGTCGTTGTAATGCACCCAGGTACAAAACATATATC
TTGTCAAACTTTGCAACTTTGCTTCGAGTTTCTTTTGGTTGAAGCTTTCG
TTTCCGTAGCTTACTcattgcaactttaagcttgcAAGAGTTGTGCCATT
TGGCTTTATTGTCATTCAATAATGACAAAGGATTTGCGTATGCAATCAAA
TGTGTAACGATAGGACTGGATGTATCAGGTAATGCGTCATTGCTATGGAA
TTGGTTCAAGGCAGTCACGAGATTCTCATATGTGTTTTTTACTTAAACCT
TATTGTTGTTTCTACAAGTCTCCTTTAAACCTTCGTCCGTAGCTTTTTGG
CAAAGAATACATTTAGTCCAATCAACATTTTTCATTCTTGTTTCAATTCg
cattgttttcaaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015473XLOC_015473Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027462-exon-sc0000627-1491911889:166443..167257TCONS_00027462-exon-sc0000627-1491911889:166443..167257Clytia hemisphaericaexon
TCONS_00027462-exon-sc0000627-1510915933:166443..167257TCONS_00027462-exon-sc0000627-1510915933:166443..167257Clytia hemisphaericaexon
TCONS_00027462-exon-sc0000627-1575043694:166443..167257TCONS_00027462-exon-sc0000627-1575043694:166443..167257Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000627supercontigsc0000627:166443..167257 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0585441	0.0570897	0.0662867	0	0.1579	0.187162	0.225803	0.140929	0.049334	0.488865	0.415191	0.19495	0	0	0.0664866	0.107025	1.18662	1.39643	0.248935	0	0.113208	0.165656	0.537004	0.427188	0.188569	0	2.9702	1.11374	0	0.0662037
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027462 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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