TCONS_00027453 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027453
Unique NameTCONS_00027453
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length253

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027453 ID=TCONS_00027453|Name=TCONS_00027453|organism=Clytia hemisphaerica|type=transcript|length=253bp
CTCGGAAAGCTGCATGATCACCGGACTTCATCGCTTCTCTCAACGACTCC
AATGCACGGCCAATTTGTGTTCCTGGCACCCAATTGTCGACGATTTCTTC
CCAGGAGTTTGGTGCTCCacaaatgacgtcaaaatggaCACCAGCAGTCC
GTAATCTTTCTGCCCAATTTCGTACTAACACAAAATACTTTTGGCAGTAA
GTGATCATGTTAGCCGTCCGCTGGCCCAACTCAGTCGCAAGCGATGTGCC
AAA
Run BLAST on NCBI

transcript from alignment at sc0000627:66683..66935

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027453 ID=TCONS_00027453|Name=TCONS_00027453|organism=Clytia hemisphaerica|type=transcript|length=253bp|location=Sequence derived from alignment at sc0000627:66683..66935 (Clytia hemisphaerica)
TTTGGCACATCGCTTGCGACTGAGTTGGGCCAGCGGACGGCTAACATGAT
CACTTACTGCCAAAAGTATTTTGTGTTAGTACGAAATTGGGCAGAAAGAT
TACGGACTGCTGGTGtccattttgacgtcatttgtGGAGCACCAAACTCC
TGGGAAGAAATCGTCGACAATTGGGTGCCAGGAACACAAATTGGCCGTGC
ATTGGAGTCGTTGAGAGAAGCGATGAAGTCCGGTGATCATGCAGCTTTCC
GAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015464XLOC_015464Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027453-exon-sc0000627-1491911889:66683..66935TCONS_00027453-exon-sc0000627-1491911889:66683..66935Clytia hemisphaericaexon
TCONS_00027453-exon-sc0000627-1510915933:66683..66935TCONS_00027453-exon-sc0000627-1510915933:66683..66935Clytia hemisphaericaexon
TCONS_00027453-exon-sc0000627-1575043694:66683..66935TCONS_00027453-exon-sc0000627-1575043694:66683..66935Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000627supercontigsc0000627:66683..66935 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.731279	0	0	0	5.91703	3.89643	0	8.80181	3.08118	10.6863	5.92707	6.81839	6.32256	9.09145	0.415245	0	0	1.12535	0	1.62692	0	0	0	0.762291	1.57028	2.10216	0	0	0.811663	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027453 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top