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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027445 ID=TCONS_00027445|Name=TCONS_00027445|organism=Clytia hemisphaerica|type=transcript|length=1771bp
ggacgattttttggcctatttttccaacGGGGTGGGgatccaccgggtct
gtgacacaggggtgtcatatgcaaaatgtaaagaaatataATTCATAATA
CCCAAAAATAATAATACTCCTGCTCCATCTTTTGACAGTAGAAAGTGAAT
AGAATAACAAAATATCCAAGGTGATATGTAAGCAAAAGCAATTGATTAAC
ATTACATTTATATCAAAGACACACTCCTAAAGTGTTTTATACCAGTTGTT
AGAGGAgtttaaataaatttataaacGCAAGCAATATGCTCTTGGAACGA
CTGCCATTAATTTTTGGCAGttcttttcgaatttaaaatgTACAAATTTA
GCAAATGTTCGCTGCACTGGCATAAATGAAGACGCCCCTTTAGGCTTTGT
GAGCACATTGTCCCAAACTTCCACTGGTTTGCCAAAGATATCACGTTTAT
CACTTTCAAGAAACcaactaattttagcgaatacgtGGGGATAGTGCTCG
TCACCAAAGAAAACATTATGCTTGATGAAGTAAACTATTTGACCAGGAAC
TGGTTTAAGATACATTTCACCAGGAGCTTGAATTGATCCATCTGAAGATG
CCCAAAACGCAGAGACGTAGCTAGATTTATGGCTTCTGGATTTTACTGAT
CCGAGCAAATTTTCGCCATAGACCAATTCTGTGGTTTTCCAACTTGTTTG
AGGAACCAAAAGGTTATGGTAATCGGTAGGATATAGACTGGAGTATGTCA
TTTTTAGCATACGAAACTCTTCTTCATTAAGAGTGTAGGGTTGAAGTTTT
CTCGAGAACCGGAAGTAATCAAGTTCCATCCAAcacttttgattttgaaa
atcaaaattacgaGATCTGTGCATCATATGTGGAATGTAGTCAGACGACA
ACTGATCATTGAGGGTTCCACGATTCGTGTTGCGATTCATCAAGTCACAA
GACAAACGCTTTAACTCGTGAAAGTCATTGTCGACTTGATTTTGGTCATG
GAAGTTCATTAcctgatgaagaaaaataattaacctgctggtaaaattgt
aaatgtattgaaaacattaacattaagNGAAGAAAAATAATTAACTTGCT
GGTAAAATTGTAAATGTATtgaaaacattaacattaagACATTTTTGACA
TAAGCTTTGTAAAGTATAATAATCTTGTGAGTGACCCATGGCCTAAGAAT
TGACACACAAGTATTTACGCTACTATTCATCAGGGAATTTTTCAAGCACA
AAACTCCATTCAAAGTTGTGTTCTTAAAACTCGATTTTGTGAGGTTAAAT
AGTTCAGAAAAGCATTTACGAACATCCAGGAAATCCATAAGAATATCTAG
CCTCGAATGAATCTtgggtgttctaataaaaaaatcgtATAATTTACCTG
ATGGTCTCTAAGAAAGCGCTTCATTATCTGACATTCGATGTTTTTCTTGT
TGTTTGGCAAATCACCCAACAGACCGTTATACCTTTCAAATGAAAACAGC
CAAAACGAATAAACTGGACCAAACTCTTGCAAACATTCTTTTAAGTGTCC
GTGAAGGTGGATGTTTGGCGTCACTCGATCAGATGTGTACAACCGCTGGA
AtcttctacaaaaccttagaaggAACGTGTCTGCCAGTTCAATATCTTCG
AGTGTTATTACTCTTGCACAAAGATAGGTGCATGCAATTACGAACAATCT
CCAGCATTCTAAATCAGCTTCAGGGATTATACCTTTTAGTGCATATATGG
AGTAGATAAGTGTACAATTCT Run BLAST on NCBI transcript from alignment at sc0000627:31256..33080- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027445 ID=TCONS_00027445|Name=TCONS_00027445|organism=Clytia hemisphaerica|type=transcript|length=1825bp|location=Sequence derived from alignment at sc0000627:31256..33080- (Clytia hemisphaerica)
GGACGATTTTTTGGCCTATTTTTCCAACGGGGTGGGGATCCACCGGGTCT
GTGACACAGGGGTGTCATATGCAAAATGTAAAGAAATATAATTCATAATA
CCCAAAAATAATAATACTCCTGCTCCATCTTTTGACAGTAGAAAGTGAAT
AGAATAACAAAATATCTAGAGGCTATCTAATTCGTACGAGCTATAGGTTT
AAGAAGGTTATGGACATATCCAAGGTGATATGTAAGCAAAAGCAATTGAT
TAACATTACATTTATATCAAAGACACACTCCTAAAGTGTTTTATACCAGT
TGTTAGAGGAGTTTAAATAAATTTATAAACGCAAGCAATATGCTCTTGGA
ACGACTGCCATTAATTTTTGGCAGTTCTTTTCGAATTTAAAATGTACAAA
TTTAGCAAATGTTCGCTGCACTGGCATAAATGAAGACGCCCCTTTAGGCT
TTGTGAGCACATTGTCCCAAACTTCCACTGGTTTGCCAAAGATATCACGT
TTATCACTTTCAAGAAACCAACTAATTTTAGCGAATACGTGGGGATAGTG
CTCGTCACCAAAGAAAACATTATGCTTGATGAAGTAAACTATTTGACCAG
GAACTGGTTTAAGATACATTTCACCAGGAGCTTGAATTGATCCATCTGAA
GATGCCCAAAACGCAGAGACGTAGCTAGATTTATGGCTTCTGGATTTTAC
TGATCCGAGCAAATTTTCGCCATAGACCAATTCTGTGGTTTTCCAACTTG
TTTGAGGAACCAAAAGGTTATGGTAATCGGTAGGATATAGACTGGAGTAT
GTCATTTTTAGCATACGAAACTCTTCTTCATTAAGAGTGTAGGGTTGAAG
TTTTCTCGAGAACCGGAAGTAATCAAGTTCCATCCAACACTTTTGATTTT
GAAAATCAAAATTACGAGATCTGTGCATCATATGTGGAATGTAGTCAGAC
GACAACTGATCATTGAGGGTTCCACGATTCGTGTTGCGATTCATCAAGTC
ACAAGACAAACGCTTTAACTCGTGAAAGTCATTGTCGACTTGATTTTGGT
CATGGAAGTTCATTACCTGATGAAGAAAAATAATTAACCTGCTGGTAAAA
TTGTAAATGTATTGAAAACATTAACATTAAGNGAAGAAAAATAATTAACT
TGCTGGTAAAATTGTAAATGTATTGAAAACATTAACATTAAGACATTTTT
GACATAAGCTTTGTAAAGTATAATAATCTTGTGAGTGACCCATGGCCTAA
GAATTGACACACAAGTATTTACGCTACTATTCATCAGGGAATTTTTCAAG
CACAAAACTCCATTCAAAGTTGTGTTCTTAAAACTCGATTTTGTGAGGTT
AAATAGTTCAGAAAAGCATTTACGAACATCCAGGAAATCCATAAGAATAT
CTAGCCTCGAATGAATCTTGGGTGTTCTAATAAAAAAATCGTATAATTTA
CCTGATGGTCTCTAAGAAAGCGCTTCATTATCTGACATTCGATGTTTTTC
TTGTTGTTTGGCAAATCACCCAACAGACCGTTATACCTTTCAAATGAAAA
CAGCCAAAACGAATAAACTGGACCAAACTCTTGCAAACATTCTTTTAAGT
GTCCGTGAAGGTGGATGTTTGGCGTCACTCGATCAGATGTGTACAACCGC
TGGAATCTTCTACAAAACCTTAGAAGGAACGTGTCTGCCAGTTCAATATC
TTCGAGTGTTATTACTCTTGCACAAAGATAGGTGCATGCAATTACGAACA
ATCTCCAGCATTCTAAATCAGCTTCAGGGATTATACCTTTTAGTGCATAT
ATGGAGTAGATAAGTGTACAATTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027445-exon-sc0000627-1575043694:32920..33080 | TCONS_00027445-exon-sc0000627-1575043694:32920..33080 | Clytia hemisphaerica | exon |
| TCONS_00027445-exon-sc0000627-1575043694:31256..32865 | TCONS_00027445-exon-sc0000627-1575043694:31256..32865 | Clytia hemisphaerica | exon |
| TCONS_00027445-exon-sc0000627-1510915933:32920..33080 | TCONS_00027445-exon-sc0000627-1510915933:32920..33080 | Clytia hemisphaerica | exon |
| TCONS_00027445-exon-sc0000627-1510915933:31256..32865 | TCONS_00027445-exon-sc0000627-1510915933:31256..32865 | Clytia hemisphaerica | exon |
| TCONS_00027445-exon-sc0000627-1491911889:32920..33080 | TCONS_00027445-exon-sc0000627-1491911889:32920..33080 | Clytia hemisphaerica | exon |
| TCONS_00027445-exon-sc0000627-1491911889:31256..32865 | TCONS_00027445-exon-sc0000627-1491911889:31256..32865 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000627 | supercontig | sc0000627:31256..33080 - |
Blast
The following BLAST results are available for this feature:
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