TCONS_00027429 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027429
Unique NameTCONS_00027429
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length835

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027429 ID=TCONS_00027429|Name=TCONS_00027429|organism=Clytia hemisphaerica|type=transcript|length=835bp
CAAATGGCGACAAAGAAGTAAAGAAGGTCAAGGTGCAAACGTCCAAGGTT
CAAACGTCCAAAGTTGTTCAACCAGAATTGATCGATGTTCTCGAAAGACG
TACTAACTCGTGGTCAAAGATGGTACGTATCATATACAGAATGATTCGCC
TTGAAAGTCAAACAGgcaaaagtcagaagttgaagtcAAACAGAAAGCAG
AAAAGGCTATCATCAGATTAGTTCATCAGAAGGCCTTCCCTGACGACATC
AACCAATTGAAGAAGAAGGAACCACTGAAGAAAACCAGCCCGATATATCA
ATTGGCACCATTCGTCGATGGAGAAGATATTATTCGAGTTGGTGGACGTA
TCAACAATGCAACCAACATCCCATATAAAGAGAAGCATCCCATCGTGCTA
CCCAGAcgatcaacaacaacaaagagtGTCATCCAAAAAGTTCATGAAGA
GATGCATCACGGAGGGCGCAACGCAACGTTGTGTAGACTGAGAGAAAAGG
GATTCTGGTGTATCAACGGTAATTCCCTTGTTCGGCATGTTCTTCATCAA
TGTGTAACTTGTCATAAGTTACGTAGGAAGTCTCAATCACCAAAGATGGC
TAATCTACCCGAAGATCGGTTACAAGATGCACCACCATTCACCTACGTCG
GACTGGACCTTTTTGGTCCTTTCCTCGTCAAAGAGCGACGAAGCGAGCTC
AAACGTTATGGTATTATCTACACGTGCCTAAATTCACGAGCTTGCCATCT
AGAGAGTGTTAATTCTATGGACAATGATTCGTTTATCATGTGTCTACGAC
GTTTCATTGCAAGAAGAGGGCCAGCACGACCGGTC
Run BLAST on NCBI

protein sequence of TCONS_00027429-protein

>TCONS_00027429-protein ID=TCONS_00027429-protein|Name=TCONS_00027429-protein|organism=Clytia hemisphaerica|type=polypeptide|length=128bp
MHHGGRNATLCRLREKGFWCINGNSLVRHVLHQCVTCHKLRRKSQSPKMA
NLPEDRLQDAPPFTYVGLDLFGPFLVKERRSELKRYGIIYTCLNSRACHL
ESVNSMDNDSFIMCLRRFIARRGPARPV
Run BLAST on NCBI

transcript from alignment at sc0000626:172676..173510

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027429 ID=TCONS_00027429|Name=TCONS_00027429|organism=Clytia hemisphaerica|type=transcript|length=835bp|location=Sequence derived from alignment at sc0000626:172676..173510 (Clytia hemisphaerica)
GACCGGTCGTGCTGGCCCTCTTCTTGCAATGAAACGTCGTAGACACATGA
TAAACGAATCATTGTCCATAGAATTAACACTCTCTAGATGGCAAGCTCGT
GAATTTAGGCACGTGTAGATAATACCATAACGTTTGAGCTCGCTTCGTCG
CTCTTTGACGAGGAAAGGACCAAAAAGGTCCAGTCCGACGTAGGTGAATG
GTGGTGCATCTTGTAACCGATCTTCGGGTAGATTAGCCATCTTTGGTGAT
TGAGACTTCCTACGTAACTTATGACAAGTTACACATTGATGAAGAACATG
CCGAACAAGGGAATTACCGTTGATACACCAGAATCCCTTTTCTCTCAGTC
TACACAACGTTGCGTTGCGCCCTCCGTGATGCATCTCTTCATGAACTTTT
TGGATGACactctttgttgttgttgatcgTCTGGGTAGCACGATGGGATG
CTTCTCTTTATATGGGATGTTGGTTGCATTGTTGATACGTCCACCAACTC
GAATAATATCTTCTCCATCGACGAATGGTGCCAATTGATATATCGGGCTG
GTTTTCTTCAGTGGTTCCTTCTTCTTCAATTGGTTGATGTCGTCAGGGAA
GGCCTTCTGATGAACTAATCTGATGATAGCCTTTTCTGCTTTCTGTTTga
cttcaacttctgacttttgcCTGTTTGACTTTCAAGGCGAATCATTCTGT
ATATGATACGTACCATCTTTGACCACGAGTTAGTACGTCTTTCGAGAACA
TCGATCAATTCTGGTTGAACAACTTTGGACGTTTGAACCTTGGACGTTTG
CACCTTGACCTTCTTTACTTCTTTGTCGCCATTTG

Coding sequence (CDS) from alignment at sc0000626:172676..173510

>TCONS_00027429 ID=TCONS_00027429|Name=TCONS_00027429|organism=Clytia hemisphaerica|type=CDS|length=384bp|location=Sequence derived from alignment at sc0000626:172676..173510 (Clytia hemisphaerica)
GACCGGTCGTGCTGGCCCTCTTCTTGCAATGAAACGTCGTAGACACATGA
TAAACGAATCATTGTCCATAGAATTAACACTCTCTAGATGGCAAGCTCGT
GAATTTAGGCACGTGTAGATAATACCATAACGTTTGAGCTCGCTTCGTCG
CTCTTTGACGAGGAAAGGACCAAAAAGGTCCAGTCCGACGTAGGTGAATG
GTGGTGCATCTTGTAACCGATCTTCGGGTAGATTAGCCATCTTTGGTGAT
TGAGACTTCCTACGTAACTTATGACAAGTTACACATTGATGAAGAACATG
CCGAACAAGGGAATTACCGTTGATACACCAGAATCCCTTTTCTCTCAGTC
TACACAACGTTGCGTTGCGCCCTCCGTGATGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015446XLOC_015446Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027429-exon-sc0000626-1491911889:172676..173510TCONS_00027429-exon-sc0000626-1491911889:172676..173510Clytia hemisphaericaexon
TCONS_00027429-exon-sc0000626-1510915933:172676..173510TCONS_00027429-exon-sc0000626-1510915933:172676..173510Clytia hemisphaericaexon
TCONS_00027429-exon-sc0000626-1575043694:172676..173510TCONS_00027429-exon-sc0000626-1575043694:172676..173510Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027429-proteinTCONS_00027429-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000626supercontigsc0000626:172676..173510 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.25778	1.46087	0.989168	0.654985	1.75784	1.44946	2.91452	3.78708	1.35478	0.848825	0.689017	1.00356	0.527687	0.609781	0.482718	0.748244	1.02107	0.784926	0.240982	0.0630425	0.402408	0.481091	0.553775	0.697501	0.182544	0.217222	0	0.331741	0.566131	0.479957
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027429 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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