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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027417 ID=TCONS_00027417|Name=TCONS_00027417|organism=Clytia hemisphaerica|type=transcript|length=1167bp
CTGGAATTTTCGCCTTGAAAGAACACAGTAACATTTTCGTTCAATGCTCT
AACGGAAAAGCTATTTGCCAAAAATGCCCCCATGGATTGATGTTTAGTGA
TTCCTTGAAAACTTGTGTTAGACCTTCAGACAAgaaaccaacaacaacaa
ctactacaaAAGCCCCTCATGACCCATATAAAGGAATCGAACCTCACAAA
CCCCACAAAACACACAAGCCACATACCACAAAAGCTCCACACAAACCACA
TGCTTCTAATCCAGATTGTCCATCATCACTTTGCCACCACAAAGACACTG
AAATTTTCGCCTTGAAAGAACACAGTAACATTTTCGTTCAATGCTCTAAC
GGAAAAGCTATTTGCCAAAAATGCCCCCATGGATTGGTGTTTAGTGATTC
CTTGAAAACCTGTGTTAGACCTTCAGACAaaaaaccaacaacaacaacta
ctacaaAAGCCCCTCATGACCCATATAAAGGAATCAAACCTCACAAACCA
CACACAATACACAAACCGCATACCACAAAAGCTCCACACACCACAAAAGC
CCCACACACCACAAATGCCCCACACACCACAAAAGCCCCACACACCACAA
AAGCTCCACACACCACAAAAGCTCCACACAAGGTTCACAAGCCACATACT
ACTAAAGCTCCACATGTACCTCACTCAGACTGTCCAACCTCATTATGTGC
CAATAAAGTTGATGGCTCTTTATTCCGCCTCAATGATCATCAACCAAACA
TCTTCGTTCAATGCATTCACGGAAAACCAATCTGCAAAAAGTGTCCAGAA
CATCAGTTCTTCAATGATAAATTCAATGTATGTGTTCGACGAACCATCCC
CCAGACCACAACAAAGAAACCACATGTCAGCGTTGTTGGACATCACAATC
CAAACAAACCACATAATCCCCATAAAAACCAATGTCCAAAATCCTTGTGT
GCTGATTACCCACACAGTGACTATGTTGTCTTCCGATACCCACACAAACC
AACTTATTACGTCCAATGTACCGCTGGAAGACCTGTCTGCAGAAAATGCC
CACATGGACTGATCTTCGACAATAAAGTCAGAGTGTGCGTCTtcccaaaa
tattgagaaataaATTCTCAGGATAAATAAAGTTGCTGGCCCAAGTATCT
ACTGGATCTACTTttac Run BLAST on NCBI protein sequence of TCONS_00027417-protein >TCONS_00027417-protein ID=TCONS_00027417-protein|Name=TCONS_00027417-protein|organism=Clytia hemisphaerica|type=polypeptide|length=367bp
GIFALKEHSNIFVQCSNGKAICQKCPHGLMFSDSLKTCVRPSDKKPTTTT
TTKAPHDPYKGIEPHKPHKTHKPHTTKAPHKPHASNPDCPSSLCHHKDTE
IFALKEHSNIFVQCSNGKAICQKCPHGLVFSDSLKTCVRPSDKKPTTTTT
TKAPHDPYKGIKPHKPHTIHKPHTTKAPHTTKAPHTTNAPHTTKAPHTTK
APHTTKAPHKVHKPHTTKAPHVPHSDCPTSLCANKVDGSLFRLNDHQPNI
FVQCIHGKPICKKCPEHQFFNDKFNVCVRRTIPQTTTKKPHVSVVGHHNP
NKPHNPHKNQCPKSLCADYPHSDYVVFRYPHKPTYYVQCTAGRPVCRKCP
HGLIFDNKVRVCVFPKY Run BLAST on NCBI transcript from alignment at sc0000626:110694..112908+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027417 ID=TCONS_00027417|Name=TCONS_00027417|organism=Clytia hemisphaerica|type=transcript|length=2215bp|location=Sequence derived from alignment at sc0000626:110694..112908+ (Clytia hemisphaerica)
CTGGAATTTTCGCCTTGAAAGAACACAGTAACATTTTCGTTCAATGCTCT
AACGGAAAAGCTATTTGCCAAAAATGCCCCCATGGATTGATGTTTAGTGA
TTCCTTGAAAACTTGTGTTAGACCTTCAGACAAgaaaccaacaacaacaa
ctactacaaAAGCCCCTCATGACCCATATAAAGGAATCGAACCTCACAAA
CCCCACAAAACACACAAGCCACATACCACAAAAGCTCCACACAAACCACA
TGCTTCTAATCCAGATTGTAAGAAAACCTTGAAGATTTAAAATCTTCTTT
ATGCCCGCTCTCCTTTTAAGGGTCTTAATATACAGCAAATCAAACAGTTC
AAGTTGAGTCATAATAAAGAATCCTTTTCTAAATCTATGGCAATCTCCTG
TAAATGAGCGATAGCGCAGATCTCTAATGCGTTATCCATACAAAGTGGGG
GCTCCTTGTCCGAATCCCCACTCCTTTCAATACTCCCTTCAGTTGGTTGC
CGGTGTATAACTGAGCCGGCTAGTCGTGGGTCCCGTAAGAGCAATCAAAC
GTCCTATGTCACTGAGCCATCTacgtaaaaaaaataaactattCCATCAA
AATACTTGACTTAAAACCCTATTTCCTTGGATATATTGCTTGAGTTTAAT
TCTATTTTCAGGTCCATCATCACTTTGCCACCACAAAGACACTGAAATTT
TCGCCTTGAAAGAACACAGTAACATTTTCGTTCAATGCTCTAACGGAAAA
GCTATTTGCCAAAAATGCCCCCATGGATTGGTGTTTAGTGATTCCTTGAA
AACCTGTGTTAGACCTTCAGACAaaaaaccaacaacaacaactactacaa
AAGCCCCTCATGACCCATATAAAGGAATCAAACCTCACAAACCACACACA
ATACACAAACCGCATACCACAAAAGCTCCACACACCACAAAAGCCCCACA
CACCACAAATGCCCCACACACCACAAAAGCCCCACACACCACAAAAGCTC
CACACACCACAAAAGCTCCACACAAGGTTCACAAGCCACATACTACTAAA
GCTCCACATGTACCTCACTCAGACTGTAAGTATCAAATCTTAACAAAAGT
AAATCTTACTTACTGACTACGAATTTTACAGCTTAGATTTGAATTCTGAA
GTATTACGAAATGTCTACAGAAAGGCAGCACCAGGCCTTTTAGGCCTTAA
AAGTAGGAGTTTACGCTTGAAACGAGGAAATATATGACTTAGCCTACCAA
ATGACGACTTAtcatcttataaaaacattaacTATACATATTTTTGTCAT
AGGTCCAACCTCATTATGTGCCAATAAAGTTGATGGCTCTTTATTCCGCC
TCAATGATCATCAACCAAACATCTTCGTTCAATGCATTCACGGAAAACCA
ATCTGCAAAAAGTGTCCAGAACATCAGTTCTTCAATGATAAATTCAATGT
ATGTGTTCGACGAACCATCCCCCAGACCACAACAAAGAAACCACATGTCA
GCGTTGTTGGACATCACAATCCAAACAAACCACATAATCCCCATAAAAAC
CAATGTAAGTATTTTGACACTAAAATGGTCTGGGAGAGAAttaccctgtc
tcacagcccaaTTTGAACTTCTTCCTATAGCGGTGATAAAGATTTCTAAC
GAAATCCCAATAGGGTTAGAAATTCTATGTCAAAAAACCCAGTGAGAATA
GTTTTCCAGCGTAATTTTTTGCTATTGAATTTTAAATGTGAATTGAAAGA
AATCTATTTCTCAGAatttgtaggatattttttccagtggAGTGGGGATC
CCCGTGAGAATTGATACTCTCCACCTAAATTTCCTGTCTACTCTAGCTTA
TGGCATGTCCAAAAATGCCATAAACTGGGCGCACAAAACATTCAACAACA
ATCATTTATGTACAAAATCAGTGTACTCGGATGTAGAATTAAAAATTACT
GAATTACTGAATTACTGAATTCTTCTTTTAGGTCCAAAATCCTTGTGTGC
TGATTACCCACACAGTGACTATGTTGTCTTCCGATACCCACACAAACCAA
CTTATTACGTCCAATGTACCGCTGGAAGACCTGTCTGCAGAAAATGCCCA
CATGGACTGATCTTCGACAATAAAGTCAGAGTGTGCGTCTtcccaaaata
ttgagaaataaATTCTCAGGATAAATAAAGTTGCTGGCCCAAGTATCTAC
TGGATCTACTTttac Coding sequence (CDS) from alignment at sc0000626:110694..112908+ >TCONS_00027417 ID=TCONS_00027417|Name=TCONS_00027417|organism=Clytia hemisphaerica|type=CDS|length=4416bp|location=Sequence derived from alignment at sc0000626:110694..112908+ (Clytia hemisphaerica)
GGAATTTTCGCCTTGAAAGAACACAGTAACATTTTCGTTCAATGCTCTAA
CGGAAAAGCTATTTGCCAAAAATGCCCCCATGGATTGATGTTTAGTGATT
CCTTGAAAACTTGTGTTAGACCTTCAGACAAgaaaccaacaacaacaact
actacaaAAGCCCCTCATGACCCATATAAAGGAATCGAACCTCACAAACC
CCACAAAACACACAAGCCACATACCACAAAAGCTCCACACAAACCACATG
CTTCTAATCCAGATTGTCCATCATCACTTTGCCACCACAAAGACACTGAA
ATTTTCGCCTTGAAAGAACACAGTAACATTTTCGTTCAATGCTCTAACGG
AAAAGCTATTTGCCAAAAATGCCCCCATGGATTGGTGTTTAGTGATTCCT
TGAAAACCTGTGTTAGACCTTCAGACAaaaaaccaacaacaacaactact
acaaAAGCCCCTCATGACCCATATAAAGGAATCAAACCTCACAAACCACA
CACAATACACAAACCGCATACCACAAAAGCTCCACACACCACAAAAGCCC
CACACACCACAAATGCCCCACACACCACAAAAGCCCCACACACCACAAAA
GCTCCACACACCACAAAAGCTCCACACAAGGTTCACAAGCCACATACTAC
TAAAGCTCCACATGTACCTCACTCAGACTGTCCAACCTCATTATGTGCCA
ATAAAGTTGATGGCTCTTTATTCCGCCTCAATGATCATCAACCAAACATC
TTCGTTCAATGCATTCACGGAAAACCAATCTGCAAAAAGTGTCCAGAACA
TCAGTTCTTCAATGATAAATTCAATGTATGTGTTCGACGAACCATCCCCC
AGACCACAACAAAGAAACCACATGTCAGCGTTGTTGGACATCACAATCCA
AACAAACCACATAATCCCCATAAAAACCAATGTCCAAAATCCTTGTGTGC
TGATTACCCACACAGTGACTATGTTGTCTTCCGATACCCACACAAACCAA
CTTATTACGTCCAATGTACCGCTGGAAGACCTGTCTGCAGAAAATGCCCA
CATGGACTGATCTTCGACAATAAAGTCAGAGTGTGCGTCTtcccaaaata
ttgaGGAATTTTCGCCTTGAAAGAACACAGTAACATTTTCGTTCAATGCT
CTAACGGAAAAGCTATTTGCCAAAAATGCCCCCATGGATTGATGTTTAGT
GATTCCTTGAAAACTTGTGTTAGACCTTCAGACAAgaaaccaacaacaac
aactactacaaAAGCCCCTCATGACCCATATAAAGGAATCGAACCTCACA
AACCCCACAAAACACACAAGCCACATACCACAAAAGCTCCACACAAACCA
CATGCTTCTAATCCAGATTGTCCATCATCACTTTGCCACCACAAAGACAC
TGAAATTTTCGCCTTGAAAGAACACAGTAACATTTTCGTTCAATGCTCTA
ACGGAAAAGCTATTTGCCAAAAATGCCCCCATGGATTGGTGTTTAGTGAT
TCCTTGAAAACCTGTGTTAGACCTTCAGACAaaaaaccaacaacaacaac
tactacaaAAGCCCCTCATGACCCATATAAAGGAATCAAACCTCACAAAC
CACACACAATACACAAACCGCATACCACAAAAGCTCCACACACCACAAAA
GCCCCACACACCACAAATGCCCCACACACCACAAAAGCCCCACACACCAC
AAAAGCTCCACACACCACAAAAGCTCCACACAAGGTTCACAAGCCACATA
CTACTAAAGCTCCACATGTACCTCACTCAGACTGTCCAACCTCATTATGT
GCCAATAAAGTTGATGGCTCTTTATTCCGCCTCAATGATCATCAACCAAA
CATCTTCGTTCAATGCATTCACGGAAAACCAATCTGCAAAAAGTGTCCAG
AACATCAGTTCTTCAATGATAAATTCAATGTATGTGTTCGACGAACCATC
CCCCAGACCACAACAAAGAAACCACATGTCAGCGTTGTTGGACATCACAA
TCCAAACAAACCACATAATCCCCATAAAAACCAATGTCCAAAATCCTTGT
GTGCTGATTACCCACACAGTGACTATGTTGTCTTCCGATACCCACACAAA
CCAACTTATTACGTCCAATGTACCGCTGGAAGACCTGTCTGCAGAAAATG
CCCACATGGACTGATCTTCGACAATAAAGTCAGAGTGTGCGTCTtcccaa
aatattgaGGAATTTTCGCCTTGAAAGAACACAGTAACATTTTCGTTCAA
TGCTCTAACGGAAAAGCTATTTGCCAAAAATGCCCCCATGGATTGATGTT
TAGTGATTCCTTGAAAACTTGTGTTAGACCTTCAGACAAgaaaccaacaa
caacaactactacaaAAGCCCCTCATGACCCATATAAAGGAATCGAACCT
CACAAACCCCACAAAACACACAAGCCACATACCACAAAAGCTCCACACAA
ACCACATGCTTCTAATCCAGATTGTCCATCATCACTTTGCCACCACAAAG
ACACTGAAATTTTCGCCTTGAAAGAACACAGTAACATTTTCGTTCAATGC
TCTAACGGAAAAGCTATTTGCCAAAAATGCCCCCATGGATTGGTGTTTAG
TGATTCCTTGAAAACCTGTGTTAGACCTTCAGACAaaaaaccaacaacaa
caactactacaaAAGCCCCTCATGACCCATATAAAGGAATCAAACCTCAC
AAACCACACACAATACACAAACCGCATACCACAAAAGCTCCACACACCAC
AAAAGCCCCACACACCACAAATGCCCCACACACCACAAAAGCCCCACACA
CCACAAAAGCTCCACACACCACAAAAGCTCCACACAAGGTTCACAAGCCA
CATACTACTAAAGCTCCACATGTACCTCACTCAGACTGTCCAACCTCATT
ATGTGCCAATAAAGTTGATGGCTCTTTATTCCGCCTCAATGATCATCAAC
CAAACATCTTCGTTCAATGCATTCACGGAAAACCAATCTGCAAAAAGTGT
CCAGAACATCAGTTCTTCAATGATAAATTCAATGTATGTGTTCGACGAAC
CATCCCCCAGACCACAACAAAGAAACCACATGTCAGCGTTGTTGGACATC
ACAATCCAAACAAACCACATAATCCCCATAAAAACCAATGTCCAAAATCC
TTGTGTGCTGATTACCCACACAGTGACTATGTTGTCTTCCGATACCCACA
CAAACCAACTTATTACGTCCAATGTACCGCTGGAAGACCTGTCTGCAGAA
AATGCCCACATGGACTGATCTTCGACAATAAAGTCAGAGTGTGCGTCTtc
ccaaaatattgaGGAATTTTCGCCTTGAAAGAACACAGTAACATTTTCGT
TCAATGCTCTAACGGAAAAGCTATTTGCCAAAAATGCCCCCATGGATTGA
TGTTTAGTGATTCCTTGAAAACTTGTGTTAGACCTTCAGACAAgaaacca
acaacaacaactactacaaAAGCCCCTCATGACCCATATAAAGGAATCGA
ACCTCACAAACCCCACAAAACACACAAGCCACATACCACAAAAGCTCCAC
ACAAACCACATGCTTCTAATCCAGATTGTCCATCATCACTTTGCCACCAC
AAAGACACTGAAATTTTCGCCTTGAAAGAACACAGTAACATTTTCGTTCA
ATGCTCTAACGGAAAAGCTATTTGCCAAAAATGCCCCCATGGATTGGTGT
TTAGTGATTCCTTGAAAACCTGTGTTAGACCTTCAGACAaaaaaccaaca
acaacaactactacaaAAGCCCCTCATGACCCATATAAAGGAATCAAACC
TCACAAACCACACACAATACACAAACCGCATACCACAAAAGCTCCACACA
CCACAAAAGCCCCACACACCACAAATGCCCCACACACCACAAAAGCCCCA
CACACCACAAAAGCTCCACACACCACAAAAGCTCCACACAAGGTTCACAA
GCCACATACTACTAAAGCTCCACATGTACCTCACTCAGACTGTCCAACCT
CATTATGTGCCAATAAAGTTGATGGCTCTTTATTCCGCCTCAATGATCAT
CAACCAAACATCTTCGTTCAATGCATTCACGGAAAACCAATCTGCAAAAA
GTGTCCAGAACATCAGTTCTTCAATGATAAATTCAATGTATGTGTTCGAC
GAACCATCCCCCAGACCACAACAAAGAAACCACATGTCAGCGTTGTTGGA
CATCACAATCCAAACAAACCACATAATCCCCATAAAAACCAATGTCCAAA
ATCCTTGTGTGCTGATTACCCACACAGTGACTATGTTGTCTTCCGATACC
CACACAAACCAACTTATTACGTCCAATGTACCGCTGGAAGACCTGTCTGC
AGAAAATGCCCACATGGACTGATCTTCGACAATAAAGTCAGAGTGTGCGT
CTtcccaaaatattga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027417-exon-sc0000626-1491911889:110694..110960 | TCONS_00027417-exon-sc0000626-1491911889:110694..110960 | Clytia hemisphaerica | exon |
| TCONS_00027417-exon-sc0000626-1510915933:110694..110960 | TCONS_00027417-exon-sc0000626-1510915933:110694..110960 | Clytia hemisphaerica | exon |
| TCONS_00027417-exon-sc0000626-1575043694:110694..110960 | TCONS_00027417-exon-sc0000626-1575043694:110694..110960 | Clytia hemisphaerica | exon |
| TCONS_00027417-exon-sc0000626-1491911889:111355..111768 | TCONS_00027417-exon-sc0000626-1491911889:111355..111768 | Clytia hemisphaerica | exon |
| TCONS_00027417-exon-sc0000626-1510915933:111355..111768 | TCONS_00027417-exon-sc0000626-1510915933:111355..111768 | Clytia hemisphaerica | exon |
| TCONS_00027417-exon-sc0000626-1575043694:111355..111768 | TCONS_00027417-exon-sc0000626-1575043694:111355..111768 | Clytia hemisphaerica | exon |
| TCONS_00027417-exon-sc0000626-1491911889:111996..112247 | TCONS_00027417-exon-sc0000626-1491911889:111996..112247 | Clytia hemisphaerica | exon |
| TCONS_00027417-exon-sc0000626-1510915933:111996..112247 | TCONS_00027417-exon-sc0000626-1510915933:111996..112247 | Clytia hemisphaerica | exon |
| TCONS_00027417-exon-sc0000626-1575043694:111996..112247 | TCONS_00027417-exon-sc0000626-1575043694:111996..112247 | Clytia hemisphaerica | exon |
| TCONS_00027417-exon-sc0000626-1491911889:112675..112908 | TCONS_00027417-exon-sc0000626-1491911889:112675..112908 | Clytia hemisphaerica | exon |
| TCONS_00027417-exon-sc0000626-1510915933:112675..112908 | TCONS_00027417-exon-sc0000626-1510915933:112675..112908 | Clytia hemisphaerica | exon |
| TCONS_00027417-exon-sc0000626-1575043694:112675..112908 | TCONS_00027417-exon-sc0000626-1575043694:112675..112908 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000626 | supercontig | sc0000626:110694..112908 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002557 | Chitin-bd_dom |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005576 | extracellular region |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006030 | chitin metabolic process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008061 | chitin binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006030 |
chitin metabolic process |
| cellular_component |
GO:0005576 |
extracellular region |
| molecular_function |
GO:0008061 |
chitin binding |
Blast
The following BLAST results are available for this feature:
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