TCONS_00027404 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027404
Unique NameTCONS_00027404
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length279

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027404 ID=TCONS_00027404|Name=TCONS_00027404|organism=Clytia hemisphaerica|type=transcript|length=279bp
gtaaaattcggttcttccatcatcatcatcatcatgataagacggcaaaa
aaaaaatccgatttcccgatatttGCACGGATTTCTTTTCGAGTAAACAC
CGGGATAAAAAACGCGCGCGATTGCATCAGCCATTGGGATTATTGCATCA
GCTTCTTTTTTATCTCCCAAATAATGCGCTATCTCTATATTCATGATAGC
ATGATTTTTCTGCTAAATGTATTAGCTTCCCAATAAGTTGCCACTACagt
tgtgaaaattaaaaacaagatttGGCTGN
Run BLAST on NCBI

transcript from alignment at sc0000620:108214..108492

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027404 ID=TCONS_00027404|Name=TCONS_00027404|organism=Clytia hemisphaerica|type=transcript|length=279bp|location=Sequence derived from alignment at sc0000620:108214..108492 (Clytia hemisphaerica)
NCAGCCaaatcttgtttttaattttcacaactGTAGTGGCAACTTATTGG
GAAGCTAATACATTTAGCAGAAAAATCATGCTATCATGAATATAGAGATA
GCGCATTATTTGGGAGATAAAAAAGAAGCTGATGCAATAATCCCAATGGC
TGATGCAATCGCGCGCGTTTTTTATCCCGGTGTTTACTCGAAAAGAAATC
CGTGCaaatatcgggaaatcggattttttttttgccgtcttatcatgatg
atgatgatgatggaagaaccgaattttac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015427XLOC_015427Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027404-exon-sc0000620-1491911889:108214..108492TCONS_00027404-exon-sc0000620-1491911889:108214..108492Clytia hemisphaericaexon
TCONS_00027404-exon-sc0000620-1510915933:108214..108492TCONS_00027404-exon-sc0000620-1510915933:108214..108492Clytia hemisphaericaexon
TCONS_00027404-exon-sc0000620-1575043694:108214..108492TCONS_00027404-exon-sc0000620-1575043694:108214..108492Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000620supercontigsc0000620:108214..108492 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.97694	4.877	1.83973	0.67551	1.60139	0.644004	1.29293	0.42211	1.56856	0	0.667212	0.666284	0.691943	0.568871	1.92366	1.1281	2.08326	1.06496	1.67161	2.11386	2.12607	1.14868	0.522157	0	0.503444	0.686852	0	2.77988	1.69935
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027404 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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