TCONS_00027397 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027397
Unique NameTCONS_00027397
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length378

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027397 ID=TCONS_00027397|Name=TCONS_00027397|organism=Clytia hemisphaerica|type=transcript|length=378bp
GCAATGTTGACGATTGAATTTGATGGACCAGCCATTGGAGTTAAAGGAGC
AATGTTGACGATTGAATTTGATGGACCAGCCATTGGAGTTAAAGGAGCAA
TGTTGACGATTGAATTTGATGGACCAGCCATTGGATTTAAAGGAGCAATG
TTAACGAATGAATTTGATGGACCAGCCATGGTAGATTGTGGTGACAGATA
ATTGTTAGAGAGAGGAAAAGAAACATTTGTTTGCATATTATAAGATATAT
CAGATGCAGATGAAATACACGGAGTTGGCAAATTCTCTGAAGAGTTTGGT
AGATTAATATGTTTACAAGGACCACAACTGAAAAGTGTATGTAAATGTTT
GTAATTCTCATCAAGATTATTCCACTTC
Run BLAST on NCBI

protein sequence of TCONS_00027397-protein

>TCONS_00027397-protein ID=TCONS_00027397-protein|Name=TCONS_00027397-protein|organism=Clytia hemisphaerica|type=polypeptide|length=125bp
KWNNLDENYKHLHTLFSCGPCKHINLPNSSENLPTPCISSASDISYNMQT
NVSFPLSNNYLSPQSTMAGPSNSFVNIAPLNPMAGPSNSIVNIAPLTPMA
GPSNSIVNIAPLTPMAGPSNSIVNI
Run BLAST on NCBI

transcript from alignment at sc0000620:54900..55277

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027397 ID=TCONS_00027397|Name=TCONS_00027397|organism=Clytia hemisphaerica|type=transcript|length=378bp|location=Sequence derived from alignment at sc0000620:54900..55277 (Clytia hemisphaerica)
GAAGTGGAATAATCTTGATGAGAATTACAAACATTTACATACACTTTTCA
GTTGTGGTCCTTGTAAACATATTAATCTACCAAACTCTTCAGAGAATTTG
CCAACTCCGTGTATTTCATCTGCATCTGATATATCTTATAATATGCAAAC
AAATGTTTCTTTTCCTCTCTCTAACAATTATCTGTCACCACAATCTACCA
TGGCTGGTCCATCAAATTCATTCGTTAACATTGCTCCTTTAAATCCAATG
GCTGGTCCATCAAATTCAATCGTCAACATTGCTCCTTTAACTCCAATGGC
TGGTCCATCAAATTCAATCGTCAACATTGCTCCTTTAACTCCAATGGCTG
GTCCATCAAATTCAATCGTCAACATTGC

Coding sequence (CDS) from alignment at sc0000620:54900..55277

>TCONS_00027397 ID=TCONS_00027397|Name=TCONS_00027397|organism=Clytia hemisphaerica|type=CDS|length=375bp|location=Sequence derived from alignment at sc0000620:54900..55277 (Clytia hemisphaerica)
AAGTGGAATAATCTTGATGAGAATTACAAACATTTACATACACTTTTCAG
TTGTGGTCCTTGTAAACATATTAATCTACCAAACTCTTCAGAGAATTTGC
CAACTCCGTGTATTTCATCTGCATCTGATATATCTTATAATATGCAAACA
AATGTTTCTTTTCCTCTCTCTAACAATTATCTGTCACCACAATCTACCAT
GGCTGGTCCATCAAATTCATTCGTTAACATTGCTCCTTTAAATCCAATGG
CTGGTCCATCAAATTCAATCGTCAACATTGCTCCTTTAACTCCAATGGCT
GGTCCATCAAATTCAATCGTCAACATTGCTCCTTTAACTCCAATGGCTGG
TCCATCAAATTCAATCGTCAACATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015420XLOC_015420Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027397-proteinTCONS_00027397-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027397-exon-sc0000620-1491911889:54900..55277TCONS_00027397-exon-sc0000620-1491911889:54900..55277Clytia hemisphaericaexon
TCONS_00027397-exon-sc0000620-1510915933:54900..55277TCONS_00027397-exon-sc0000620-1510915933:54900..55277Clytia hemisphaericaexon
TCONS_00027397-exon-sc0000620-1575043694:54900..55277TCONS_00027397-exon-sc0000620-1575043694:54900..55277Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000620supercontigsc0000620:54900..55277 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.209927	0	0.475381	0	0.283099	1.11854	0.809685	1.26336	0.707607	0	0.850739	0.139811	0.558465	0.289986	1.19204	0.895467	2.52147	1.61526	3.57052	1.40111	2.0297	3.86106	0.481397	0.65649	0	0.201155	3.74208	3.99365	0.466006	0.474787
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027397 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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