TCONS_00027393 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00027393
Unique Name	TCONS_00027393
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	751

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000620:194642..196713-

transcript sequence

>TCONS_00027393 ID=TCONS_00027393|Name=TCONS_00027393|organism=Clytia hemisphaerica|type=transcript|length=751bp
TTCCTGTCATTCTCTCCGTGAAAAAGgGAGCTAATGGTAATATGTTGAAG
ATATTTGCGTGTCTGACTTGGTTTTTCCTGACATTGTTTGCTTTATTGTA
TGGTTCGTATGTAGTAAATCATTCATGGGACTTCATCGATGCTGTATATG
GCTTTATATTGCAAGCACCTGATTTGACGCCAAACATGGGCTTGTTTTGG
TACTTCTTCTTAGAAATGTTCGATCACTTTCGATTGTTCTTTCTTGTGGT
GTATCAAATCAATGTCTTCATCTATGCCATCCCTCTTGCTATCGTATTCA
GAAATCGACCCATGATTTTATCATACGCTTTGCTGTCTTTGATGGTTCTA
TTTCAATCCTATTCAAACATGGGAAATTTATCGCTGCCCTTCGCGTTGAT
CCCTCTGTGGAGTCATCTTTATCCATACATGCGTAACTTTTTGTTGATAG
CCGGTATGTTTTTCTTCACTTCACTGTTGGCCCCTTCCATGTGGTATTTG
TGGATTTATGCTGGCATGGGAAACGCTAACTTCTTTTATGCAGTGACACT
CGCCTACAACACTGCTCAGGTGTTTCTACTGTCGGATGTGCTGTATGCAT
TTCTACGTCATCGATTTCACTTGAAGAACGGCCTCTCACCGAAGACCAAA
GATGGAAAAGAAGGGATTGTCATCATGAAGTGAACGAAATTTTTAGGTAG
TAAGATATTTAAcaatttgttttttcaaagaacaATTCATTTTAAATGTA
C

Run BLAST on NCBI

transcript from alignment at sc0000620:194642..196713-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00027393 ID=TCONS_00027393|Name=TCONS_00027393|organism=Clytia hemisphaerica|type=transcript|length=2072bp|location=Sequence derived from alignment at sc0000620:194642..196713- (Clytia hemisphaerica)
TTCCTGTCATTCTCTCCGTGAAAAAGGTGAGAGGGAAAAAAGGATTTTTT
ATTCTGGTGAACAGTTAAAGCATGATGATAAACTTTTGAGACTTTGTTTT
CATTCAGTCAAATTCAGTCATCAAAGCACACCAACAGATAACATCTTATT
TCTTATCAACCTTTCTCGGTTAATGATTGATAGTCAACCTTTGAAAAAAA
ACATTGTCTCAGATGGCTTTTTCTCAAGTGAAATATTTGATGCTCCTCTA
TTATGTCAAAATAAAAGTCCATTACTCTAGCTTGATATTATACCTTATTC
GACGTAAGTCACGATCAATTTCTTTTTTGTTTCAGGGAGCTAATGGTAAT
ATGTTGAAGATATTTGCGTGTCTGACTTGGTTTTTCCTGACATTGTTTGC
TTTATTGTATGGTTCGTATGTAGTAAATCATTCATGGGACTTCATCGATG
CTGTATATGGCTTTATGTGAGTTTTTCAATGTTCTAATGCTGCGTTCTAA
AGGTGCAGCAGTTATCATAACTGACTGTATTGTACTAGCCTTGCTCGATC
TATTTCAACCTGTATAAACCATCACGTAGATGGTTCAACTCTTAGACTGC
TCTCAGCCATCATCAATAAAGAGAAGCCGGTCATTATCAGAGTTCTAAAG
CTAGAAGGTATCATTTCCTAGCCATATTCTAATTTAAGATATCTTGAATT
ATGAAGTACAACATTTTTTTTTTGTTTGGACAGATTGCAAGCACCTGATT
TGACGCCAAACATGGGCTTGTTTTGGTACTTCTTCTTAGAAATGTTCGAT
CACTTTCGATTGTTCTTTCTTGTGGTGTATCAAATCAATGTCTTCATCTA
TGCCATCCCTCTTGCTATCGTATTCAGGTGGGTCTTCTTTTCCTTTTCCT
GCCTTTCAATTATGAAAGTGTCATATAGTGTCCCTTTTTTCGAATTTTTT
TTTTGACCCTTGTAGAAACTATTTTGACTTTTTGTTGTTTTTGTAGTAAC
ACTTGGAGTGACATTTATTTAGGGACATACCATGCCTCCCTGGGTATTTT
TACAGCTAGCAATGATGAGTAACAGTCTTCATTTTTTCATTCCAGAAATC
GACCCATGATTTTATCATACGCTTTGCTGTCTTTGATGGTTCTATTTCAA
TCCTATTCAAACATGGGAAATTTATCGCTGCCCTTCGCGTTGATCCCTCT
GTGGAGTCATCTTTATCCATGTAAGCTTTCTTATCAACCTTTCAGTTTTT
TTAACAATACCTCAATTGCTTTTCGTGGAGTATACACACAATAGATTTGC
GGCACTCGATCCTTATGCTAATAATGATCAGATATTTTTTCACCAGACTA
GTTCCCAATCAACTAGAATGGATGTTGATAATGATTTTTCAACTTTGTAA
AGAATTCCTTCTGAAAATTTTAATGACAGTCAAAGTATAATATACATGCT
CGCTCTCTCCTTTTCAGACATGCGTAACTTTTTGTTGATAGCCGGTATGT
TTTTCTTCACTTCACTGTTGGCCCCTTCCATGTGGTATTTGTGGATTTAT
GCTGGCATGGGAAACGCTAACTTCTTTTATGCAGTGACACTCGCCTACAA
CACTGCTCAGGTATTAAATGATAATACCTGATAAGTTTTTCCGGTTTGCT
ATGTTAGGGTAGAAGAGGCGCCTGGATATGCTTTAAAATGAATTCTGATT
TTACCGTTAAGTTCTTAAAGAAAGTAACTGGATCCGAGAGAGCCAATTCT
GTTGAGCTAAGACAGAGATCAACGATCGAGCGTTTTTTTAAAGATATAGT
GCGTACAGCACTATTTTGGTGAAATATTACATACTCTGGAATAATGGAAG
GCCGGCACCACCAAGCTTATAATTTTGGATTCGTTTCCAGGTGTTTCTAC
TGTCGGATGTGCTGTATGCATTTCTACGTCATCGATTTCACTTGAAGAAC
GGCCTCTCACCGAAGACCAAAGATGGAAAAGAAGGGATTGTCATCATGAA
GTGAACGAAATTTTTAGGTAGTAAGATATTTAACAATTTGTTTTTTCAAA
GAACAATTCATTTTAAATGTAC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_015417	XLOC_015417	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000620	supercontig	sc0000620:194642..196713 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.92157	11.8954	10.5509	9.89877	0	0	0	0	1.24335	2.14834	0.00688615	0.220944	3.46446	6.54081e-05	1.87373	0.618958	1.90046	2.05877	8.30643	8.30548	1.98095	1.32383	6.70744	9.13856	0	0	1.25155	3.56079	2.94084	2.25892

Blast

[Close]

BLAST of TCONS_00027393 vs. Swiss-Prot (Human)
Match: PIGU (Phosphatidylinositol glycan anchor biosynthesis class U protein OS=Homo sapiens GN=PIGU PE=1 SV=3)

HSP 1 Score: 216.083 bits (549), Expect = 9.893e-67
Identity = 97/192 (50.52%), Postives = 137/192 (71.35%), Query Frame = 3

Query:  105 SYVVNHSWDFIDAVYGFILQAPDLTPNMGLFWYFFLEMFDHFRLFFLVVYQINVFIYAIPLAIVFRNRPMILSYALLSLMVLFQSYSNMGNLSLPFALIPLWSHLYPYMRNFLLIAGMFFFTSLLAPSMWYLWIYAGMGNANFFYAVTLAYNTAQVFLLSDVLYAFLRHRFHLKNGLSPKTKDGKEGIVIMK 680
            S+ +  SWDFI AVYGFIL  PDLTPN+GLFWYFF EMF+HF LFF+ V+QINVF Y IPLAI  +  P+   +  ++++ +F+SY  +G+++L  A  P+W+HLY ++RN  ++  +    SLL P +W+LWIYAG  N+NFFYA+TL +N  Q+ L+SD  YAFLR  ++L +GL    KDG E ++++K
Sbjct:  244 SFFLLSSWDFIPAVYGFILSVPDLTPNIGLFWYFFAEMFEHFSLFFVCVFQINVFFYTIPLAIKLKEHPIFFMFIQIAVIAIFKSYPTVGDVALYMAFFPVWNHLYRFLRNIFVLTCIIIVCSLLFPVLWHLWIYAGSANSNFFYAITLTFNVGQILLISDYFYAFLRREYYLTHGLYLTAKDGTEAMLVLK 435

The following BLAST results are available for this feature:

BLAST of TCONS_00027393 vs. Swiss-Prot (Human)

BLAST of TCONS_00027393 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
PIGU	9.893e-67	50.52	Phosphatidylinositol glycan anchor biosynthesis cl...	[more]

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TCONS_00027393 (transcript) - C. hemisphaerica