TCONS_00027380 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00027380
Unique Name	TCONS_00027380
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2214

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000620:188755..194559+

transcript sequence

>TCONS_00027380 ID=TCONS_00027380|Name=TCONS_00027380|organism=Clytia hemisphaerica|type=transcript|length=2214bp
aaaaaacaaaaccttcgaCTTTGAACTCGCGAAGCATGCTGACAAACTAA
AAGTTTCGTAATCAGCAGGAAAAGGGACTTAACCCGTTTTTGTGTGTATA
TAAAACTGTCCGCATGAATCCTTAGGGGGTGGCTGCTCAATgctcacatt
tttctttattttgaaagcAAACATCTATGAATGATGAGCAGTAAGGAGAC
ACTCATTGATGTAACATTCTCTGCATTTTCCATCTGACGTCTCGTCCCTC
TTATAAGTTTGCAAGTAGAAGACAATAGAAAGCAAAACACAACGGAACAA
AGAAACCTTACCAAAAAGCTTGACCACTGTGAATTATGACAATCCTCTGC
ACACGGTACCTTGTAATTTCGAGATGGGAGCCATTTGTGCTGGTTATGAA
AGGGATTCAGTATCTCCTGCCAAATGGTTGATCCAACAAGGAGccacaag
ttcccaagacactGGCCCATCATTCGATAACACACTGGGCAAAGGTCAAA
ATGGATGGTACATGTACTTGGAAACTTCCAACCAATTAAGTGGGAAAGTA
GCGACGATACAGACAGTGCTTCTGGACCACCAAGTCACACAGGGAAAGAA
ACTATGTTTGAGTTTTTACTATCACATGTACGGTCACACTATGGGAGACT
TCAACATACACGTTGATGTACCTGAAGGAAATGGAATGACCAAACATTTC
GAGTTGAAGGGAAATCAGAAACAGCGTGACTGGCAATTCGGAAGGTTCGC
CTTTGACACACCACAAAAGCCATTCAAGATTGTATTCAAAGGGACGACCT
CGTTTAGCTATTTTGGAGACATTGGTTTAGATGATATTGACTTGAAATTG
GTTTCAAGTAAAAGCTCATGTGACTTCTGGCCAACCAATGCTGCCACAAC
GAACAACAATGCCATTCCCACCCTTCCTTTGGTAACTATTGGTCCAAATG
GAATTCCTCCAGTTGGGAATGGACCATCGAAATGCGGTCGCCGTCAAGTA
CCTGTTGGAAGAATTTTCAATGGCCAAAACGTGTACGCTGGAAAATGGCC
TTGGATGGCTATGGTCTTGCGTCAACAAAAGGATGGCACGTACAAGCATA
TGTGCGGCGGAGCATTGTACGGTGGACAATACGTCATCACGGCCGCACAC
TGTCTTGTGGAAACCAAACGTAACAGTCACATTCGCGTACGGTTAGGCGC
ACACCTCCGCAAGGCATCAAACGCAAACCAACAAGACTTCGACGTCAGTG
CCATCTATATTCACACCGACTACAAGAAGAAAGCATGGCATGATAATGAC
ATCGCACTTTTGAAGTTGGATAAACCAGTGATCACGACCGATTATATCCA
ACCCATTTGTTTGACTGATAATCAAATCAATCCTGGCGCAGAATGCGTGG
TTACAGgaTGGGGAGAGTTTTGGGCTCAAAGCAAAGATAGTGAGACCTTC
AATTACGCCCATCAGTTGAAAGAAGCACGCGTCGAACTCAAATCTATGAA
CCAGTGCAAGAAGGTGTACCACGATAGTTTGCTGACCAAGAACATGCTAT
GTGCAGGTCCATACAATGACAATTTCGCCGATACGTGCCGTGGCGATTCT
GGTGGCCCTTTAATGtgcaaaaataatgacaaaagtTGGTCACTAGTTGG
AGTGACGAGTTGGGGACACAGTGACGGATGTGGACAACCCGACAAGTTTG
GGGTGTACACCAAGATGTCTGAAACATCTTCATGGATCACTCATACAACA
CTATACCCTCATCTACATCCAACACTTCATGgggagaaaaagaagaattg
agTTTTCTTGATACAACGACGGAATAATGAACCACAGAGATGCATTTGAA
CAATAGAATGACGAAACAAAGACATTTTGACGATGTGAGGATTTAAATGA
CGAAAAGAAGTCGACGATGAAAACTGAGGAGCATTTTAACAATGTTTATG
CTTCTAACGATTAAAAATtcttttggtgactttttatattaatttcatta
tcattttaaactttttattataagtaCGAGATAACTTTGACTAACGTTGA
CcgttttgtaaagttttttttttaataatttaagGTTGtgtcgaaaaatg
aaaaaaagttcttCTTTAAGCGATATCCCGTTCTTTCTTGGCTTTTTTCA
CAATCTTGAAAAGTTAAGTTtcgagaaaatgattttttgaccGAATTGAA
GTAAAGCTTAAAGA

Run BLAST on NCBI

transcript from alignment at sc0000620:188755..194559+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00027380 ID=TCONS_00027380|Name=TCONS_00027380|organism=Clytia hemisphaerica|type=transcript|length=5805bp|location=Sequence derived from alignment at sc0000620:188755..194559+ (Clytia hemisphaerica)
aaaaaacaaaaccttcgaCTTTGAACTCGCGAAGCATGCTGACAAACTAA
AAGTTTCGTAATCAGCAGGAAAAGGGACTTAACCCGTTTTTGTGTGTATA
TAAAACTGTCCGCATGAATCCTTAGGGGGTGGCTGCTCAATgctcacatt
tttctttattttgaaagcAAACATCTATGAATGATGAGCAGTAAGGAGAC
ACTCATTGATGTAACATTCTCTGCATTTTCCATCTGACGTCTCGTCCCTC
TTATAAGTTTGCAAGTAGAAGACAATAGAAAGCAAAACACAACGGAACAA
AGAAAGTGAGTATAAAAGGGAATGGAGAACAGTGTCCGTTTCACATTATC
AAGTCATAACGTGTAAGTAAGGCTGGCTGGAACAGCTTAACGCACAGGCA
CAAAAACCGAAAACTTCATTCTCAAAAAAaccaaaagtctttttttttat
ttatctcatttttcattcgtttcTTACATCTTTTTGGATCGCTAAAATGG
TTGTTGTACAATTGTTTTGGTGCATTATTTATTGTTATTTATTGCAAGCC
CACGGAAAAGGTACGTTGCTCATTAAATTATTCTTcgcatttttttaatt
caaagtaAATTTCCGTCAATCTTTGGAAACGCAGCgttttcaaaaatgag
tctACAAAAATGGCAGATTAATCGTTGATCAAAGGACTAGTCAATCAAAG
TCACATGTCAGTCAAAGTGAAGTTGCTACTTTATAGAACTTCCTTCGAAA
ATGTTTCCAAAGATTGCAGACTGCCAACCTTTCCGTCCAAATAGCCAACT
GATTCTTTTTACTTCATAAATTCTTTGGGACCATTGCTTTTTGCCATTGT
GTGTAATTCGGTTTTGAGCCAGATATTTGAACCTGATGGTAATCTGCAAG
GAGGATAATTGCACTGATGATAAAATCACATAGAAGATTTTTCTTGTATA
AATATATTTTGTTCCTATGTTACTCTTCTCAGGACAGATCATTGCCTCAT
GAAAACGAAGGGTCAAGGGGGTCAAAATTTACTAAATAAAAGCAAGGTTT
TCAAGTTGCTGTGCAATCGAAAATCCAGACGTCTGGTATTTCATCCTCTG
TACATCCCTATAACGACGTAATCTGCCAAGGTGAGGACAGGACATGCTGA
TTTTAACATTCACTGTCATTCTTTTTCATTACAGCCTTACCAAAAAGCTT
GACCACTGTGAATTATGACAATCCTCTGCACACGGTACCTTGTAATTTCG
AGATGGGAGCCATTTGTGCTGGTTATGAAAGGGATTCAGTATCTCCTGCC
AAATGGTTGATCCAACAAGGAGccacaagttcccaagacactGGCCCATC
ATTCGATAACACACTGGGCAAAGGTCAAAATGGTATGTATAAATGACCCT
CAAATcataagttttgaaattttgtttagttaaagtaaaattcttCAGCA
AATATAGTAGAATATCTAGGTAAGATTTCGCAAGGTaaaaatttgctaaa
atttaGAAGCGTTGCCCGCAGTGGTCAAGGCtatcctaaaaattttcaat
gagCTTTGACGAAATATTGGGATACTATAATGAAGATGTCAACCTCGACT
CGAAGGAAGGGGAAGTTGACTTCGTCATCCCTATTCGAGTCGAATACACA
ACGTCACAACACTTTATTGACAAGTGGCTTTTACTCAACTTTTGAATGCG
ATTAAACAACAAATAGAACAACATGATGCAGACAAAATAAACATCAAAAT
ACCGTGACCATTCGTCTAATCTTTCCGTTACAAAGAACAGGCAGTGCTGT
GGAAAAATCAACCTTAAAAGAAGctgttgaaaaaagaaattactcTTTCT
ATCGGCCGTAAAACATAATCTACCTGGTACTGTATTGCTCAGGATCCCTT
ATACAATATGGTGATTTTctcaagaaaaaaagtttttttcatatgCTATT
CCACAAATTTAGGTTTTAAGGTCctcattaaaagattttctgtatGGCTG
CTAATGCGAATACTTGACAGCTACTCAAGGAAGTTTCGCAAAAATGCTTC
ACATTCCAGCGTAAGAAAGGTCATTGAGTGGGTGGTGGGCGTTTTAACCc
ttcaaaatattcttaaaatcaaaaacatCGAAATAGTTCTCACGAGCata
agcaaaaataaaaaatccatctCGCAACATATCTGGTCAAAGTGTACTAT
ACACGACCTGAAATACTATAATAGTAATATACTTTTTGCAGGATGGTACA
TGTACTTGGAAACTTCCAACCAATTAAGTGGGAAAGTAGCGACGATACAG
ACAGTGCTTCTGGACCACCAAGTCACACAGGGAAAGAAACTATGTTTGAG
TTTTTACTATCACATGTACGGTCACACTATGGGAGACTTCAACATACACG
TTGATGTACCTGAAGGAAATGGAATGACCAAACATTTCGAGTTGAAGGGA
AATCAGAAACAGCGTGACTGGCAATTCGGAAGGTTCGCCTTTGACACACC
ACAAAAGCCATTCAAGGTAAGCAGTAAAGGTCTAAAGGTTGGTCTCAACC
AGTtaaaaacttgttttgtttacaTTAGTTTCTGTGACAAAACTCCTTTA
CTACGTTGTACTTCATCACAGAACTCCCCGTAACTTACAGAGAATCTGTG
TAGTACTGGTGGTATACGTGAGATAAAAAGGCTAGCACAACGTAAACAAT
CAACTGCTGTTCGAAAGCAGGAAAATTGGTCTATCTCCCTTGCAATGTGG
TAATGTGCATGCAAGAACATGTTAAAGCCACATGTTTCGCAGAGGAAATA
TGATCAGTTTTGATAAGGCGTTATTTCACAATTTCTTTTGTAGATTGTAT
TCAAAGGGACGACCTCGTTTAGCTATTTTGGAGACATTGGTTTAGATGAT
ATTGACTTGAAATTGGTTTCAAGTAAAAGCTCATGTGACTTCTGGCCAAC
CAATGCTGCCACAACGAACAACAATGCCATTCCCACCCTTCCTTTGGTAA
CTATTGGTCCAAATGGAATTCCTCCAGTTGGTAGGTTGTTGATCTCTTAC
TATTACGTAATATCATTACAACAGctaacttaagggctctgaccatagtg
aatttttcataattgccgtgtttaaaatgtgttttctgactgatgtaacc
aacaaaactatggcatgttatacattttctattagacaaactattcctga
atctgaaaatttaaaaattgcattgaaaaaatttgatgaagaagaaaatg
aagactttcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNggtttttc
atcaatttttcatctggattttgcttaaaaaaacagtcataacttttgac
acatcttttaagaaaaattttccgcaaaatttaaaatagttcaatgcTTT
GCGGACagaataaagaaattttgaaacacaaaagttaattacccattaaa
actaagcattttttgtaaaagagggtgatgcaacatattattgacatctt
tttaaagttcataacctcatttttgcaattaaattcttaatttctcttaa
gggattcgattaaaaagcaatttataaaggcaattctttgttaaaagtgt
taaaggaacctgaaatataacttttatgttcaaataccaaaatccatttt
tggagtatggtcagagcccttaatgcATGATAACTAATAAGGAGGCGACA
ATAAGGCAATTACAGACTAAGCTTATAATAGAAGTAGCTAGAACTATTTT
TTAAAGGAGAAACTACTTTATTGTTCACAGGGAATGGACCATCGAAATGC
GGTCGCCGTCAAGTACCTGTTGGAAGAATTTTCAATGGCCAAAACGTGTA
CGCTGGAAAATGGCCTTGGATGGCTATGGTCTTGCGTCAACAAAAGGATG
GCACGTACAAGCATATGTGCGGCGGAGCATTGTACGGTGGACAATACGTC
ATCACGGCCGCACACTGTCTTGTGGAAACCAAACGTAACAGTCACATTCG
CGTACGGTTAGGCGCACACCTCCGCAAGGCATCAAACGCAAACCAACAAG
ACTTCGACGTCAGTGCCATCTATATTCACACCGACTACAAGAAGAAAGCA
TGGCATGATAATGACATCGCACTTTTGAAGTTGGATAAACCAGTGATCAC
GACCGATTATATCCAACCCATTTGTTTGACTGATAATCAAATCAATCCTG
GCGCAGAATGCGTGGTTACAGGTTGGTGAAGCTTTGACATCTTGAAATCT
TGATAAAGACTGATCGATGGAAAGAATTATTATTTTCCCTTTGACTTTCT
ATCTATGTGTGTACATTTCtgtgttcaatttttttaaggaTGGGGAGAGT
TTTGGGCTCAAAGCAAAGATAGTGAGACCTTCAATTACGCCCATCAGTTG
AAAGAAGCACGCGTCGAACTCAAATCTATGAACCAGTGCAAGAAGGTGTA
CCACGATAGTTTGCTGACCAAGAACATGCTATGTGCAGGTCCATACAATG
ACAATTTCGCCGATACGTGCCGTGGCGATTCTGGTGGCCCTTTAATGtgc
aaaaataatgacaaaagtTGGTAAGTAGCAATTGAACTACCTGTACCAGA
AAGGTTCAGTTTTACTATTCCCTATTAAANAATGtgcaaaaataatgaca
aaagtTGGTAAGTAGCAATTGAACTACCTGTACCAGAATGGTTTAATTTT
ACTATTCCCTATTAAATCTAGAGAAACGCTTCTGTATTAAAGAATAGGTA
GATGACGGTGCATTcaaggggccatccatatagtacgtacgcagtgaagg
ggggagaggaggtttagcaaaagcgtacgtctattgtttaaatgacgtca
tttctattgttctctgcgtaaaacggggagggggtgtcaaatatttggaa
aatttttgcgtacgtactatatggacggcccccaATAACAAATAATCAAT
AACAAATGATCCATTTTTAATTATCACAGGTCACTAGTTGGAGTGACGAG
TTGGGGACACAGTGACGGATGTGGACAACCCGACAAGTTTGGGGTGTACA
CCAAGATGTCTGAAACATCTTCATGGATCACTCATACAACACTATACCCT
CATCTACATCCAACACTTCATGgggagaaaaagaagaattgagTTTTCTT
GATACAACGACGGAATAATGAACCACAGAGATGCATTTGAACAATAGAAT
GACGAAACAAAGACATTTTGACGATGTGAGGATTTAAATGACGAAAAGAA
GTCGACGATGAAAACTGAGGAGCATTTTAACAATGTTTATGCTTCTAACG
ATTAAAAATtcttttggtgactttttatattaatttcattatcattttaa
actttttattataagtaCGAGATAACTTTGACTAACGTTGACcgttttgt
aaagttttttttttaataatttaagGTTGtgtcgaaaaatgaaaaaaagt
tcttCTTTAAGCGATATCCCGTTCTTTCTTGGCTTTTTTCACAATCTTGA
AAAGTTAAGTTtcgagaaaatgattttttgaccGAATTGAAGTAAAGCTT
AAAGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_015412	XLOC_015412	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000620	supercontig	sc0000620:188755..194559 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.379885	0.959817	0.0810802	0.121371	3.49672e-07	0.188562	1.43841e-05	0.786318	1.22289	6.20622	5.84364	1.81448	25.4103	9.94768	1.27369	0.803427	1.26612	4.71015	3.96632	10.9559	1.7751	1.89048	3.25867	1.56881	15.6852	2.97556	0.374125	0	4.73617	2.01654

Blast

[Close]

BLAST of TCONS_00027380 vs. Swiss-Prot (Human)
Match: PRS33 (Serine protease 33 OS=Homo sapiens GN=PRSS33 PE=1 SV=3)

HSP 1 Score: 154.451 bits (389), Expect = 1.187e-41
Identity = 91/253 (35.97%), Postives = 125/253 (49.41%), Query Frame = 2

Query: 1010 RIFNGQNVYAGKWPWMAMVLRQQKDGTYKHMCGGALYGGQYVITAAHCLVETKRNSHIRVRLGAHLRKASNANQQDFDVSAIYIHTDYKKKAWHDNDIALLKLDKPVITTDYIQPICL--TDNQINPGAECVVTGWGEFWAQSKDSETFNYAHQLKEARVELKSMNQCKKVYH--------DSLLTKNMLCAGPYNDNFADTCRGDSGGPLMCKNNDKSWSLVGVTSWGHSDGCGQPDKFGVYTKMSETSSWI 1738
            RI  G++   G+WPW A +   Q  G   H+CGG+L   Q+V+TAAHC       +  RVRLGA    +++       V  + +  DY +      D+ALL+L +PV  +  +QP+CL     +  PG  C VTGWG      +          L+  RV L     C  +YH        + ++    LCAG Y     D C+GDSGGPL C  +  SW LVGV SWG   GC  P++ GVYT ++  S WI
Sbjct:   36 RIVGGRDGRDGEWPWQASI---QHRGA--HVCGGSLIAPQWVLTAAHCFPRRALPAEYRVRLGALRLGSTSPRTLSVPVRRVLLPPDYSEDG-ARGDLALLQLRRPVPLSARVQPVCLPVPGARPPPGTPCRVTGWGSL----RPGVPLPEWRPLQGVRVPLLDSRTCDGLYHVGADVPQAERIVLPGSLCAG-YPQGHKDACQGDSGGPLTCLQSG-SWVLVGVVSWG--KGCALPNRPGVYTSVATYSPWI 274

The following BLAST results are available for this feature:

BLAST of TCONS_00027380 vs. Swiss-Prot (Human)

BLAST of TCONS_00027380 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
PRS33	1.187e-41	35.97	Serine protease 33 OS=Homo sapiens GN=PRSS33 PE=1 ...	[more]

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TCONS_00027380 (transcript) - C. hemisphaerica