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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027337 ID=TCONS_00027337|Name=TCONS_00027337|organism=Clytia hemisphaerica|type=transcript|length=1281bp
gttttcatttgTATCACACCTTTGATGATGATTTGTGGTTATTTATCGTA
TCTAATGGTCAAACAAAtggatgaaaaagaaaagaaaaaaaacaaaaaag
CAGTGAAGTCTTCAAACAAATTAAAAACCAGAAGAAAAGTTGCAAAAGCT
GATTGATGTGTTGGAAAATTAGGATTATCAATTATGAAGAAGAAGATTAT
CGAGAAATATTTTAAGACATCTTACGAACAAGAATGTCAAAGTCGAGGGT
ACGAAAAATTGTTAGTTATTTATACGAATCAAGAACGTTTTAAAAAAATG
CAATGATTTCAATATAAATTATGCAGGATtacactttttgaaatttattt
ttgtaaattaaagATAGTACATTATGActaattgaactaaaaaagatcat
ttttatttcatttttataccTTTAACCTGTCTCAATTTTTCCATACAAGA
CTCTTTGAACTTTTAGGTATAAGTCATATTcctttttaaaagcattttgg
ATTATGAGCGCCAAGTTGTAGTGCTAATCTACTTCCTTATTCGATTAAGA
ATCAGCTACATCTTAATATcaataaaaattcataaattatgACGACATCA
TTTCTTAAACTTTGTTTATATAGTGTGTGATCGATTTTTCACTAATACTC
TATCATGATAAACCCATAATATTTTGATGTGAGAAATATACTAAAAATTT
TGCGGTAATCGTGATTAAGTGGGTAAAAATTCATCTTCTCCAAATACCTC
CTGGTGTTCCATTTCACAATTGTTTGAAACTACTTTTTGCAGTGATCCAT
GAAATTTTGCTACCTTCATGACCCTTTTTCAATCCTCATTACAATGAAAA
GTCTGTCCGAAAAAAGTCCGATCAGAATCTTATACAAATTGAAATCATCC
TCATAATTCATCTCATTTTAtgtagaaaaaattatttttgtctaGTAATA
TTTATAGgtatatgttttttttcgaatgttcttaaagttttaagcttaaa
aatattcttaaattatttgtgcaatttccaaagatattgggtgttttaga
gtccatgaAAAGTTTAAATGTTCTTTACTTGCTCTTAAAATTTCGGCCAA
CTAAGCCTGAAGTACTAAACCGGAGAGACTGCAGACTTTACTAAAAACTG
AAAATctagttttgaatttttatttttcatcaaaatttaactaGTCTGTT
ATTAGTGCTTGTTATTGTACTTTGGACATGGAAAAAGTTTTACACACTTT
TAAGTCCCCGAACCTTGTCAGAATGGAGGCT Run BLAST on NCBI transcript from alignment at sc0000616:54487..56338- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027337 ID=TCONS_00027337|Name=TCONS_00027337|organism=Clytia hemisphaerica|type=transcript|length=1852bp|location=Sequence derived from alignment at sc0000616:54487..56338- (Clytia hemisphaerica)
GTTTTCATTTGTATCACACCTTTGATGATGATTTGTGGTTATTTATCGTA
TCTAATGGTCAAACAAATGGATGAAAAAGAAAAGAAAAAAAACAAAAAAG
GTAATTTTTAAGTTATTTTTTTGTTTTGCTAAAGGTTGATTGTGATCAGA
TCAGATTTGGTGAAAAGTGAAATCGGATCAAAAAAAGAAAACATGTGCAT
CTCTAACAAAACTAAAAATGTGTAAAATCTGCAAGATTTCAAAAAAGAGA
CAATTTAAACAAAATAATGAAATTTGATTTTTCTTTACAGCAGTGAAGTC
TTCAAACAAATTAAAAACCAGAAGAAAAGTTGCAAAAGCTGATTGATGTG
TTGGAAAATTAGGTGAATAATTTTTCTTCATTTTACAGAATTTTATGTTT
TTTATATGTTGACCTGATTTATAAAGCATATAGTCATCATTTTCTTGTAC
AGTTGTTTTTTGAGGGCTGTTCCTCAACACAACTATAGAGCTTAAGAGGT
AAAAACCATCGCGATCTTATTTCGAGTTAACTTCTGCCAATTGTATTTGA
ACCAACTGGCTGCAAAGTCTTGGATACATTTTTCGAAATTTTGTCCACAG
ATTTTATGGCCATGTCTCCTGAAGAGTTGACCTGTTGTTGAACCTTTAGC
TATGGAATATTTGAGACTTAAAAAACGATACTATAAATTGTAGAGAGACT
ACAGTAAAATAGTAATACATATTTTTTCTGTTATTTTCTCAAGGATTATC
AATTATGAAGAAGAAGATTATCGAGAAATATTTTAAGACATCTTACGAAC
AAGAATGTCAAAGTCGAGGGTACGAAAAATTGTTAGTTATTTATACGAAT
CAAGAACGTTTTAAAAAAATGCAATGATTTCAATATAAATTATGCAGGAT
TACACTTTTTGAAATTTATTTTTGTAAATTAAAGATAGTACATTATGACT
AATTGAACTAAAAAAGATCATTTTTATTTCATTTTTATACCTTTAACCTG
TCTCAATTTTTCCATACAAGACTCTTTGAACTTTTAGGTATAAGTCATAT
TCCTTTTTAAAAGCATTTTGGATTATGAGCGCCAAGTTGTAGTGCTAATC
TACTTCCTTATTCGATTAAGAATCAGCTACATCTTAATATCAATAAAAAT
TCATAAATTATGACGACATCATTTCTTAAACTTTGTTTATATAGTGTGTG
ATCGATTTTTCACTAATACTCTATCATGATAAACCCATAATATTTTGATG
TGAGAAATATACTAAAAATTTTGCGGTAATCGTGATTAAGTGGGTAAAAA
TTCATCTTCTCCAAATACCTCCTGGTGTTCCATTTCACAATTGTTTGAAA
CTACTTTTTGCAGTGATCCATGAAATTTTGCTACCTTCATGACCCTTTTT
CAATCCTCATTACAATGAAAAGTCTGTCCGAAAAAAGTCCGATCAGAATC
TTATACAAATTGAAATCATCCTCATAATTCATCTCATTTTATGTAGAAAA
AATTATTTTTGTCTAGTAATATTTATAGGTATATGTTTTTTTTCGAATGT
TCTTAAAGTTTTAAGCTTAAAAATATTCTTAAATTATTTGTGCAATTTCC
AAAGATATTGGGTGTTTTAGAGTCCATGAAAAGTTTAAATGTTCTTTACT
TGCTCTTAAAATTTCGGCCAACTAAGCCTGAAGTACTAAACCGGAGAGAC
TGCAGACTTTACTAAAAACTGAAAATCTAGTTTTGAATTTTTATTTTTCA
TCAAAATTTAACTAGTCTGTTATTAGTGCTTGTTATTGTACTTTGGACAT
GGAAAAAGTTTTACACACTTTTAAGTCCCCGAACCTTGTCAGAATGGAGG
CT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027337-exon-sc0000616-1575043694:56239..56338 | TCONS_00027337-exon-sc0000616-1575043694:56239..56338 | Clytia hemisphaerica | exon |
| TCONS_00027337-exon-sc0000616-1575043694:55977..56048 | TCONS_00027337-exon-sc0000616-1575043694:55977..56048 | Clytia hemisphaerica | exon |
| TCONS_00027337-exon-sc0000616-1575043694:54487..55595 | TCONS_00027337-exon-sc0000616-1575043694:54487..55595 | Clytia hemisphaerica | exon |
| TCONS_00027337-exon-sc0000616-1510915933:56239..56338 | TCONS_00027337-exon-sc0000616-1510915933:56239..56338 | Clytia hemisphaerica | exon |
| TCONS_00027337-exon-sc0000616-1510915933:55977..56048 | TCONS_00027337-exon-sc0000616-1510915933:55977..56048 | Clytia hemisphaerica | exon |
| TCONS_00027337-exon-sc0000616-1510915933:54487..55595 | TCONS_00027337-exon-sc0000616-1510915933:54487..55595 | Clytia hemisphaerica | exon |
| TCONS_00027337-exon-sc0000616-1491911889:56239..56338 | TCONS_00027337-exon-sc0000616-1491911889:56239..56338 | Clytia hemisphaerica | exon |
| TCONS_00027337-exon-sc0000616-1491911889:55977..56048 | TCONS_00027337-exon-sc0000616-1491911889:55977..56048 | Clytia hemisphaerica | exon |
| TCONS_00027337-exon-sc0000616-1491911889:54487..55595 | TCONS_00027337-exon-sc0000616-1491911889:54487..55595 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000616 | supercontig | sc0000616:54487..56338 - |
Blast
The following BLAST results are available for this feature:
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