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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027336 ID=TCONS_00027336|Name=TCONS_00027336|organism=Clytia hemisphaerica|type=transcript|length=1651bp
TATCACACCTTTGATGATGATTTGTGGTTATTTATCGTATCTAATGGTCA
AACAAAtggatgaaaaagaaaagaaaaaaaacaaaaaagCAGTGAAGTCT
TCAAACAAATTAAAAACCAGAAGAAAAGTTGCAAAAGCTGATTGATGTGT
TGGAAAATTAGGtgaataatttttcttcattttacagaattttatgtttt
ttatatgTTGACCTGATTTATAAAGCATATAGTCATCATTTTCTTGTACA
GTTGTTTTTTGAGGGCTGTTCCTCAACACAACTATAGAGCTTAAGAGGTA
AAAACCATCGCGATCTTATTTCGAGTTAACTTCTGCCAATTGTATTTGAA
CCAACTGGCTGCAAAGTCTTGGatacatttttcgaaattttgtccacaga
TTTTATGGCCATGTCTCCTGAAGAGTTGACCTGTTGTTGAACCTTTAGCT
ATGGAATATTTGAGACTTAAAAAACGATACTATAAATTGTAGAGAGACTA
CAGTAAAATAGTAATACATAttttttctgttattttctcAAGGATTATCA
ATTATGAAGAAGAAGATTATCGAGAAATATTTTAAGACATCTTACGAACA
AGAATGTCAAAGTCGAGGGTACGAAAAATTGTTAGTTATTTATACGAATC
AAGAACGTTTTAAAAAAATGCAATGATTTCAATATAAATTATGCAGGATt
acactttttgaaatttatttttgtaaattaaagATAGTACATTATGActa
attgaactaaaaaagatcatttttatttcatttttataccTTTAACCTGT
CTCAATTTTTCCATACAAGACTCTTTGAACTTTTAGGTATAAGTCATATT
cctttttaaaagcattttggATTATGAGCGCCAAGTTGTAGTGCTAATCT
ACTTCCTTATTCGATTAAGAATCAGCTACATCTTAATATcaataaaaatt
cataaattatgACGACATCATTTCTTAAACTTTGTTTATATAGTGTGTGA
TCGATTTTTCACTAATACTCTATCATGATAAACCCATAATATTTTGATGT
GAGAAATATACTAAAAATTTTGCGGTAATCGTGATTAAGTGGGTAAAAAT
TCATCTTCTCCAAATACCTCCTGGTGTTCCATTTCACAATTGTTTGAAAC
TACTTTTTGCAGTGATCCATGAAATTTTGCTACCTTCATGACCCTTTTTC
AATCCTCATTACAATGAAAAGTCTGTCCGAAAAAAGTCCGATCAGAATCT
TATACAAATTGAAATCATCCTCATAATTCATCTCATTTTAtgtagaaaaa
attatttttgtctaGTAATATTTATAGgtatatgttttttttcgaatgtt
cttaaagttttaagcttaaaaatattcttaaattatttgtgcaatttcca
aagatattgggtgttttagagtccatgaAAAGTTTAAATGTTCTTTACTT
GCTCTTAAAATTTCGGCCAACTAAGCCTGAAGTACTAAACCGGAGAGACT
GCAGACTTTACTAAAAACTGAAAATctagttttgaatttttatttttcat
caaaatttaactaGTCTGTTATTAGTGCTTGTTATTGTACTTTGGACATG
GAAAAAGTTTTACACACTTTTAAGTCCCCGAACCTTGTCAGAATGGAGGC
T Run BLAST on NCBI transcript from alignment at sc0000616:54487..56327- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027336 ID=TCONS_00027336|Name=TCONS_00027336|organism=Clytia hemisphaerica|type=transcript|length=1841bp|location=Sequence derived from alignment at sc0000616:54487..56327- (Clytia hemisphaerica)
TATCACACCTTTGATGATGATTTGTGGTTATTTATCGTATCTAATGGTCA
AACAAATGGATGAAAAAGAAAAGAAAAAAAACAAAAAAGGTAATTTTTAA
GTTATTTTTTTGTTTTGCTAAAGGTTGATTGTGATCAGATCAGATTTGGT
GAAAAGTGAAATCGGATCAAAAAAAGAAAACATGTGCATCTCTAACAAAA
CTAAAAATGTGTAAAATCTGCAAGATTTCAAAAAAGAGACAATTTAAACA
AAATAATGAAATTTGATTTTTCTTTACAGCAGTGAAGTCTTCAAACAAAT
TAAAAACCAGAAGAAAAGTTGCAAAAGCTGATTGATGTGTTGGAAAATTA
GGTGAATAATTTTTCTTCATTTTACAGAATTTTATGTTTTTTATATGTTG
ACCTGATTTATAAAGCATATAGTCATCATTTTCTTGTACAGTTGTTTTTT
GAGGGCTGTTCCTCAACACAACTATAGAGCTTAAGAGGTAAAAACCATCG
CGATCTTATTTCGAGTTAACTTCTGCCAATTGTATTTGAACCAACTGGCT
GCAAAGTCTTGGATACATTTTTCGAAATTTTGTCCACAGATTTTATGGCC
ATGTCTCCTGAAGAGTTGACCTGTTGTTGAACCTTTAGCTATGGAATATT
TGAGACTTAAAAAACGATACTATAAATTGTAGAGAGACTACAGTAAAATA
GTAATACATATTTTTTCTGTTATTTTCTCAAGGATTATCAATTATGAAGA
AGAAGATTATCGAGAAATATTTTAAGACATCTTACGAACAAGAATGTCAA
AGTCGAGGGTACGAAAAATTGTTAGTTATTTATACGAATCAAGAACGTTT
TAAAAAAATGCAATGATTTCAATATAAATTATGCAGGATTACACTTTTTG
AAATTTATTTTTGTAAATTAAAGATAGTACATTATGACTAATTGAACTAA
AAAAGATCATTTTTATTTCATTTTTATACCTTTAACCTGTCTCAATTTTT
CCATACAAGACTCTTTGAACTTTTAGGTATAAGTCATATTCCTTTTTAAA
AGCATTTTGGATTATGAGCGCCAAGTTGTAGTGCTAATCTACTTCCTTAT
TCGATTAAGAATCAGCTACATCTTAATATCAATAAAAATTCATAAATTAT
GACGACATCATTTCTTAAACTTTGTTTATATAGTGTGTGATCGATTTTTC
ACTAATACTCTATCATGATAAACCCATAATATTTTGATGTGAGAAATATA
CTAAAAATTTTGCGGTAATCGTGATTAAGTGGGTAAAAATTCATCTTCTC
CAAATACCTCCTGGTGTTCCATTTCACAATTGTTTGAAACTACTTTTTGC
AGTGATCCATGAAATTTTGCTACCTTCATGACCCTTTTTCAATCCTCATT
ACAATGAAAAGTCTGTCCGAAAAAAGTCCGATCAGAATCTTATACAAATT
GAAATCATCCTCATAATTCATCTCATTTTATGTAGAAAAAATTATTTTTG
TCTAGTAATATTTATAGGTATATGTTTTTTTTCGAATGTTCTTAAAGTTT
TAAGCTTAAAAATATTCTTAAATTATTTGTGCAATTTCCAAAGATATTGG
GTGTTTTAGAGTCCATGAAAAGTTTAAATGTTCTTTACTTGCTCTTAAAA
TTTCGGCCAACTAAGCCTGAAGTACTAAACCGGAGAGACTGCAGACTTTA
CTAAAAACTGAAAATCTAGTTTTGAATTTTTATTTTTCATCAAAATTTAA
CTAGTCTGTTATTAGTGCTTGTTATTGTACTTTGGACATGGAAAAAGTTT
TACACACTTTTAAGTCCCCGAACCTTGTCAGAATGGAGGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027336-exon-sc0000616-1575043694:56239..56327 | TCONS_00027336-exon-sc0000616-1575043694:56239..56327 | Clytia hemisphaerica | exon |
| TCONS_00027336-exon-sc0000616-1575043694:54487..56048 | TCONS_00027336-exon-sc0000616-1575043694:54487..56048 | Clytia hemisphaerica | exon |
| TCONS_00027336-exon-sc0000616-1510915933:56239..56327 | TCONS_00027336-exon-sc0000616-1510915933:56239..56327 | Clytia hemisphaerica | exon |
| TCONS_00027336-exon-sc0000616-1510915933:54487..56048 | TCONS_00027336-exon-sc0000616-1510915933:54487..56048 | Clytia hemisphaerica | exon |
| TCONS_00027336-exon-sc0000616-1491911889:56239..56327 | TCONS_00027336-exon-sc0000616-1491911889:56239..56327 | Clytia hemisphaerica | exon |
| TCONS_00027336-exon-sc0000616-1491911889:54487..56048 | TCONS_00027336-exon-sc0000616-1491911889:54487..56048 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000616 | supercontig | sc0000616:54487..56327 - |
Blast
The following BLAST results are available for this feature:
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