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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027322 ID=TCONS_00027322|Name=TCONS_00027322|organism=Clytia hemisphaerica|type=transcript|length=3394bpRun BLAST on NCBI protein sequence of TCONS_00027322-protein >TCONS_00027322-protein ID=TCONS_00027322-protein|Name=TCONS_00027322-protein|organism=Clytia hemisphaerica|type=polypeptide|length=736bp MADYQQLNPESGNNDNDPEVEQRKPSKMLWGYPMQVYFILGNEFCERFSYRun BLAST on NCBI transcript from alignment at sc0000616:150964..170082+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00027322 ID=TCONS_00027322|Name=TCONS_00027322|organism=Clytia hemisphaerica|type=transcript|length=19119bp|location=Sequence derived from alignment at sc0000616:150964..170082+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000616:150964..170082+ >TCONS_00027322 ID=TCONS_00027322|Name=TCONS_00027322|organism=Clytia hemisphaerica|type=CDS|length=46431bp|location=Sequence derived from alignment at sc0000616:150964..170082+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00027322 vs. Swiss-Prot (Human)
Match: S15A2 (Solute carrier family 15 member 2 OS=Homo sapiens GN=SLC15A2 PE=1 SV=2) HSP 1 Score: 487.649 bits (1254), Expect = 1.473e-156 Identity = 281/675 (41.63%), Postives = 417/675 (61.78%), Query Frame = 2
Query: 287 YPMQVYFILGNEFCERFSYYGMHAILVIYLTSSLHMSKDDATAVYHAFNMLCYFSPIFGAIIADSYWGKYKTILYVSLIYALGNIVVSITAVPSVL-QAVQQAGPYXXXXXXXXXXXXXKPCVSAFGGDQFEADQEDKLQSFFSIFYFAINFGSLIATLLTPVLRGDVQCFGRDCYPLAFGVPAILMVVSLILFVSGSALYKKVPPEGNVVIEVASACGNAIKNRLSS-CGSGEKREHWIEWADTNTFSPILKSDIKALFKVLFMFLPLPIFWTLFDQQGSRWVLQAMEMNGDIGFTTVKPDQMQALNPVFVMVLIPFVEFVVYPILRKCHLLKTPLQKMGCGMILTSLSFVVAGFLQLHMEAKSSVANLPATGFSNFRVINTVPCGINVYG-ENMKVKNLSIPYHEATDY------------FAVPVKFNSLQVSTTCSPKMELSKVPISIQQQKSYSLVIGTNHSKLITEQLTDDVTPLKHGSAKVRFVHAGGSVADQISVKLGKTKISL---KPFETVEYRKLDSRDY-NIHIKENDTHDALGSKKIHLGNGGIYTVVIQPNKNIDKLKIYLYADVSPRPISILWQVPQYLIITLGEVMFSITGLEFAYSQSPPSMKSCIMAAWLLTVSIGNLLVVILAGVKLTEDMAEEFFFFAILCAVVTVIFAIMSWFY 2254
YP+ + FI+ NEFCERFSYYGM A+L++Y LH ++D +T++YHAF+ LCYF+PI GA IADS+ GK+KTI+Y+SL+Y LG+++ S+ A+P + Q V IGL LIALGTGGIKPCV+AFGGDQFE ++ +FS+FY +IN GSLI+T +TP+LRGDVQCFG DCY LAFGVP +LMV++L++F GS +Y K PPEGN+V +V AI NR + G KR+HW++WA + L D+KAL +VLF+++PLP+FW L DQQGSRW LQA+ MN ++GF ++PDQMQ LNP+ V++ IP +FV+Y ++ KC + + L+KM GMIL L+F VA +++ + + P F + + V G EN + SI + T + F +K+++L + T S+Q++ YSLVI + + + + + D + +G VRFV+ ++ +++ L T SL + + YR + +Y +H + D + +L + G ++ + N+ + KI D+ +SI WQ+PQY ++T GEVMFS+TGLEF+YSQ+P SMKS + AAWLLT+++GN++V+++A A EF F+ L V+ +IF+IM ++Y
Sbjct: 42 YPLSIAFIVVNEFCERFSYYGMKAVLILYFLYFLHWNEDTSTSIYHAFSSLCYFTPILGAAIADSWLGKFKTIIYLSLVYVLGHVIKSLGALPILGGQVVHTVLSLIGLSLIALGTGGIKPCVAAFGGDQFEEKHAEERTRYFSVFYLSINAGSLISTFITPMLRGDVQCFGEDCYALAFGVPGLLMVIALVVFAMGSKIYNKPPPEGNIVAQVFKCIWFAISNRFKNRSGDIPKRQHWLDWA-AEKYPKQLIMDVKALTRVLFLYIPLPMFWALLDQQGSRWTLQAIRMNRNLGFFVLQPDQMQVLNPLLVLIFIPLFDFVIYRLVSKCGINFSSLRKMAVGMILACLAFAVAAAVEIKINEMAPAQPGPQEVFLQVLNLADDEVKVTVVGNENNSLLIESIKSFQKTPHYSKLHLKTKSQDFHFHLKYHNLSLYTEH-----------SVQEKNWYSLVIREDGNSISSMMVKDTESRTTNGMTTVRFVN---TLHKDVNISLS-TDTSLNVGEDYGVSAYRTVQRGEYPAVHCRTEDKNFSLNLGLLDFGAAYLFVITNNTNQGLQAWKI---EDIPANKMSIAWQLPQYALVTAGEVMFSVTGLEFSYSQAPSSMKSVLQAAWLLTIAVGNIIVLVVAQFSGLVQWA-EFILFSCLLLVICLIFSIMGYYY 696 The following BLAST results are available for this feature:
BLAST of TCONS_00027322 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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