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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027315 ID=TCONS_00027315|Name=TCONS_00027315|organism=Clytia hemisphaerica|type=transcript|length=1413bp
CAAGAACTCGTTTCAATAAACGTGATGGGTCACCGGCACCTAATGCTTAT
ACCGTACCTCCCATTTTCGGCTCCAAAACGCCCACTAAACGTTCGCCACC
CGCTTATGTAATGACGGGTCGAGGGCGTGTGGGTGGATTCAGTGAAGACT
TGAGTAAGACACCTGGGCCGGGGACTTATAAAGTGAACGATCCAAATTCA
TGGAAACATCGGGCGCCAAGCTACTCAATCAGTGGTCGATTTATGATGCC
TGGTGATTCAACACAAAAGCCTGGACCTGCGCATTACAGTCCTCATAAGC
AAAGATCCGGAACTGGTCCATCTTTTGGTGTACGGCATTCAGAATATACC
GCACCTGTTCTTTTCTCTACATGCTGATTGGTTGTCGCCTGCAATTTGAT
tggatttgaaaatgttttatctGCAAGCTGATTGGTTAAAGATGTTGACA
ATGCgaactgattggttgaaaatatTAACTATGCAAGCTGATTGTTCCTT
ATGACCCTTCCCTCACTACACTCAAGCACCAGAGATCTCCATGTAGGGTA
AGTATATCTTTTACTTTCGACTATTTTTTCTTGTCTtgtattattatttt
gttattctttatctaaaatcaaattttacagGAAGGCTTTACTCCaaatt
ttataatctttttctGTAACATATACAactcaaatttttttaacaaatta
ttttatttttaagtgatttatatatttttttcttcttaacaaatttatat
acacgttttttttattagaacccagtttataagaacattgaggctgaaat
tcgtcgaaaaattaataacatcgtaagaacatgcccagcctcagtttgga
aaaaaatgacgagAAACTACAATTCTAACTGAACTTAGAGATGAATTTCC
TAAAACCGAAAGTCAagtattgtccaaattttaccaattttaagtgctct
ttattttgcatgatattgtcgatttacagtagtctgaaaaattaagaacg
catttaagaacattttaggctgaaaattgctaaaaaaataagcacatcca
ggctcagccaaNaaattaagaacgcatttaagaacattttaggctgaaaa
ttgctaaaaaagtaagcacatccaggctcagccaaattttaggtgttctg
ataaaaaaaacaacgtgtaccTACTATTTTATTTCACCTAATTATTTCTT
TTATGGGCGTGGTCCCTCATGTAcgcttttcaattatttttgaacTTTCT
TCTTAAAGCTGCGTAATTTGAATTCAAGTCTTTTTTTtatgtattatttt
ttctaaaatttattttattttgttgatgGTATTGTAAAAAGAAACCTACA
TagtatgaattttgaaaattacggTGAATGCTTACATTATAATAAAAACT
TGTCGAAATTTCC Run BLAST on NCBI transcript from alignment at sc0000616:73520..76357+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027315 ID=TCONS_00027315|Name=TCONS_00027315|organism=Clytia hemisphaerica|type=transcript|length=2838bp|location=Sequence derived from alignment at sc0000616:73520..76357+ (Clytia hemisphaerica)
CAAGAACTCGTTTCAATAAACGTGATGGGTCACCGGCACCTAATGCTTAT
ACCGTACCTCCCATTTTCGGCTCCAAAACGCCCACTAAACGTTCGCCACC
CGCTTATGTAATGACGGGTCGAGGGCGTGTGGGTGGATTCAGTGAAGACT
TGAGTAAGGTCAGACATCTTTGCTTATTCTTCAACCTACAAAGCAGTCTT
TCTTGAGTTAGGGAACAATTCTAGTCGAGAAGTTGCTAGTTGCTACTTTC
GAGTTCGGAAGTTGCTAGTTTCAGTTGGTCAGACGTCTTTGGTTGTTTGT
CAATCTAATAAATAATCTTAGATTTATCCATGAGCGAATCTAATACGATT
CTGCTCATCAAAGTTTATCCATTCCTTATTGAACAAAAAGAAGTCTTTCG
TTACGTCGCACTTCAATTATTTGAACCTTTCTATAATTGGAAATAATTAT
CAGTCCTCGCCAAGGTGGAACCCTCTCAAAATACTTCCTATCATTTGATA
TCTCTAATGTTTTTCGACCAAAAGCAAATTTCGAATTAGTGACAGTCAAC
TTTTTATACTCGATTGTTTAATCGTTTCAGACACCTGGGCCGGGGACTTA
TAAAGTGAACGATCCAAATTCATGGAAACATCGGGCGCCAAGCTACTCAA
TCAGTGGTCGATTTATGATGCCTGGTGATTCAACACAAAAGCCTGGACCT
GCGCATTACAGTCCTCATAAGGTAACATTTGTGTTTTGTTAATTACTGTT
TGCTTTGTGTTGTTTCGGTCGATGTTGGTTATATTCGAGCTTAATTTGAG
TGAAAAGAATTCATATTTTTCTATTCAAGATTGTTTTAAATAATGAATTA
ATTAGTGGGTGAAAAAGAAGTAATCAATTTTATCCACTATCCTTTGTGTT
GTCGAAGTGGGCAAGATTTCATTTTTCGGACTAAGATTAAAATTAAGACT
CGCTTTTTCGGAATACCAgcgaaaagaatttttttttcaagaggtACGGA
AAACAGCCTTCTGCCAAATGGCTGACTGAAGTTCATTTATCAAATACCCG
AAATGTTGATCTTTTTCTGCTGGAAAATTGCAGTGAAATCTTCATGAAGT
CATCAGACTCATTTCGACGGACGGTATTCGTCATATAgataatttaaaat
attaaaataaaatattaaagtaTTAAAATATATACAGATACATTTATCAT
GATTTGACTTGGCCAAAAAACAAGAAGACCTACTAAAGTAAGCTTTTTTG
CTAGTGTTGATTTGATTGAAATTGTTCTATATTTCCGTTTCTCATTTCAG
CAAAGATCCGGAACTGGTCCATCTTTTGGTGTACGGCATTCAGAATATAC
CGCACCTGTTCTTTTCTCTACATGCTGATTGGTTGTCGCCTGCAATTTGA
TtggatttgaaaatgttttatctGCAAGCTGATTGGTTAAAGATGTTGAC
AATGCgaactgattggttgaaaatatTAACTATGCAAGCTGATTGGTTAA
AGATGTTGACAATGCgaactgattggttgaaaatatTAACTATGCAAGCT
GATTGGTTTGTTTAAAGTGTTATTTGTGGATGGGAAGTTCTGATTAAATT
ACATTCCAGAGATAAATTGAAGTGTGCTTTCATGGTTCTTTGTTGTGTGC
TTTTTagtttgattttaaataaaTAGTTTTTATCCACTCTGTCTTAGTAA
TATACTAATTCATAGATACTTTGATTAACTGCTCTGTTCTTTTGTGCTTA
CTTGTAGTGGAAGGGGCTATACTGGATTTTTTATGCTGTTACTCattccc
cagctggcacacaacgtcttGTACACGCTGGGTCTGAAACAGTTTAAATA
TTTGACGAATCGAAAGCGAAAGTATAACTTTAGAAATAACTTTCTTTTTC
CGCAATCCCTTATTCCTAGTTCCTTATGACCCTTCCCTCACTACACTCAA
GCACCAGAGATCTCCATGTAGGGTAAGTATATCTTTTACTTTCGACTATT
TTTTCTTGTCTtgtattattattttgttattctttatctaaaatcaaatt
ttacagGAAGGCTTTACTCCaaattttataatctttttctGTAACATATA
CAactcaaatttttttaacaaattattttatttttaagtgatttatatat
ttttttcttcttaacaaatttatatacacgttttttttattagaacccag
tttataagaacattgaggctgaaattcgtcgaaaaattaataacatcgta
agaacatgcccagcctcagtttggaaaaaaatgacgagAAACTACAATTC
TAACTGAACTTAGAGATGAATTTCCTAAAACCGAAAGTCAagtattgtcc
aaattttaccaattttaagtgctctttattttgcatgatattgtcgattt
acagtagtctgaaaaattaagaacgcatttaagaacattttaggctgaaa
attgctaaaaaaataagcacatccaggctcagccaaNaaattaagaacgc
atttaagaacattttaggctgaaaattgctaaaaaagtaagcacatccag
gctcagccaaattttaggtgttctgataaaaaaaacaacgtgtaccTACT
ATTTTATTTCACCTAATTATTTCTTTTATGGGCGTGGTCCCTCATGTAcg
cttttcaattatttttgaacTTTCTTCTTAAAGCTGCGTAATTTGAATTC
AAGTCTTTTTTTtatgtattattttttctaaaatttattttattttgttg
atgGTATTGTAAAAAGAAACCTACATagtatgaattttgaaaattacggT
GAATGCTTACATTATAATAAAAACTTGTCGAAATTTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027315-exon-sc0000616-1491911889:73520..73677 | TCONS_00027315-exon-sc0000616-1491911889:73520..73677 | Clytia hemisphaerica | exon |
| TCONS_00027315-exon-sc0000616-1510915933:73520..73677 | TCONS_00027315-exon-sc0000616-1510915933:73520..73677 | Clytia hemisphaerica | exon |
| TCONS_00027315-exon-sc0000616-1575043694:73520..73677 | TCONS_00027315-exon-sc0000616-1575043694:73520..73677 | Clytia hemisphaerica | exon |
| TCONS_00027315-exon-sc0000616-1491911889:74100..74240 | TCONS_00027315-exon-sc0000616-1491911889:74100..74240 | Clytia hemisphaerica | exon |
| TCONS_00027315-exon-sc0000616-1510915933:74100..74240 | TCONS_00027315-exon-sc0000616-1510915933:74100..74240 | Clytia hemisphaerica | exon |
| TCONS_00027315-exon-sc0000616-1575043694:74100..74240 | TCONS_00027315-exon-sc0000616-1575043694:74100..74240 | Clytia hemisphaerica | exon |
| TCONS_00027315-exon-sc0000616-1491911889:74820..75014 | TCONS_00027315-exon-sc0000616-1491911889:74820..75014 | Clytia hemisphaerica | exon |
| TCONS_00027315-exon-sc0000616-1510915933:74820..75014 | TCONS_00027315-exon-sc0000616-1510915933:74820..75014 | Clytia hemisphaerica | exon |
| TCONS_00027315-exon-sc0000616-1575043694:74820..75014 | TCONS_00027315-exon-sc0000616-1575043694:74820..75014 | Clytia hemisphaerica | exon |
| TCONS_00027315-exon-sc0000616-1491911889:75439..76357 | TCONS_00027315-exon-sc0000616-1491911889:75439..76357 | Clytia hemisphaerica | exon |
| TCONS_00027315-exon-sc0000616-1510915933:75439..76357 | TCONS_00027315-exon-sc0000616-1510915933:75439..76357 | Clytia hemisphaerica | exon |
| TCONS_00027315-exon-sc0000616-1575043694:75439..76357 | TCONS_00027315-exon-sc0000616-1575043694:75439..76357 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000616 | supercontig | sc0000616:73520..76357 + |
Blast
BLAST of TCONS_00027315 vs. Swiss-Prot (Human)
Match: ODF3B (Outer dense fiber protein 3B OS=Homo sapiens GN=ODF3B PE=2 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 2.442e-24 Identity = 54/111 (48.65%), Postives = 70/111 (63.06%), Query Frame = 3
Query: 30 SPAPNAYTVPPIFGSKTPTKRSPPAYVMTGRGRVGGFSEDLSKTPGPGTYKVNDPNSWKHRAPSYSISGRFMMPGDSTQKPGPAHYSPHKQRSGTGPSFGVRHSEYTAPVL 362
SP P AYTVP + G + K S P + GR G F EDLSKTPGP Y+V P +K RAP ++I R +P D+T+KPGPA Y+ + R G SFG+RHS+Y AP++
Sbjct: 138 SPGPAAYTVPSLLGPRVIGKVSAPTCSIYGRRAAGSFFEDLSKTPGPCAYQVVSPGVYKSRAPQFTILARTSLPQDNTRKPGPAAYNVDQHRKPRGWSFGIRHSDYLAPLV 248
The following BLAST results are available for this feature:
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