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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027305 ID=TCONS_00027305|Name=TCONS_00027305|organism=Clytia hemisphaerica|type=transcript|length=1417bp
GACAAATGTTCAACACACATCACACAACTTGTAACGAATGCAGATGAAGC
AGAGATGAATCCAACAGGAACAGCAGGGGATGTAGAGTCAAATCAAACCT
TTCTTCCTTTGTCCACAGATGGGTATTCAAAGTACGAATTCAGAATCAGT
GAGGAGAACTGGGGCGAGGATAGTGACAAGGAGTTTTCACTATTCTACAG
CTCACCAACCGGTTTTGACAATACAGGAAACTTTTATTCCGCTTTCATTC
GTCCAACACGAAGCTACAGTCACCCTGACGGAAGGAACATTGTATACGTG
TTTTCTTATCAAGGTGACAAGCTCCAAACGCAACAATTCGAATTCGAAGA
AAAACCTAAGAAGTTTCTTGATAAACCAAACTCAAAGCTGTACAACCCTT
CACTCTTGCGTTGGTTCTATGTTCAACAGTCTGACGATAAAAAACGGGTG
ACAATTTTCAGCAGTTGCTTGAGAAGTCTAATTCGCACTTCAAGCGAGCC
AATAAAAATACAAATGAATGCGGCTGAATATAATTGTGCAAGCTTCAGTT
TTGAAAGCCCTGTAAAGAGGTTTCGAATTGATGAAGACATGGAGAAGAGA
TTTCTTATTGTCAGTTGCTGCGAAGAAAAGGATGACAAATGGAGCATCAA
TTGTTTGCGATATGACGAGGAACAAGTAGCTCATTTCAAGAGGATTAAAA
TCGAGCACAGTGAATACTCTAAAGTATTTAGCGATATCTGTGGAAATAAC
TGGATATCTGTGTACCAAGGGGACGAAAACATGGAAAAGATTTTCATGCT
GTTTAAAGAAGTTAAAGTAGGATACACATTGATTGATATAAAATATCATC
TCACATGTTTTAACGGGTCAGGCAAATTGGCGTTTACGTCTCAGTTGGGC
AAGCTTTACAAAGATTTCAAGTTTGTCAGCCGACTTGATGCTACAACTTT
CGTCACGGTCTCCTTTGATTTAACAAttaaaatcatgaaagcttcacCAG
AAGGGCTGGTTGCAATGAGGGAATTCAAGCCCAAACCACTACCTACAGAG
CATATTCACCATATCCAGCTACTGAAAACCTCTGAAAAGATCTACATTCA
AATGATACATAGGTCTTTTCagtttaaaatatatatttatgaTGTATATT
CAGAACCGGGGGAACCGTTTGCAGTTCGTTATACAAGAGTAAGCTACTAC
AAGCCTAAACTCGCTATTAACCAACTATCAAATGATGTAGCCATTCTACA
ATTTCAAGACGTACAACCAACCTTTGAAGTGGAATTcctaaattttgata
aattttgtgCAACACGAGGTGACGATCCTTAACTACATCAATGTTTCTTA
CAATGATTAGACTAGTAAGTCTTTCTTGATAACTGCAAGATCCTTAAATG
ACACAGCTCAAAAGAAC Run BLAST on NCBI protein sequence of TCONS_00027305-protein >TCONS_00027305-protein ID=TCONS_00027305-protein|Name=TCONS_00027305-protein|organism=Clytia hemisphaerica|type=polypeptide|length=443bp
DKCSTHITQLVTNADEAEMNPTGTAGDVESNQTFLPLSTDGYSKYEFRIS
EENWGEDSDKEFSLFYSSPTGFDNTGNFYSAFIRPTRSYSHPDGRNIVYV
FSYQGDKLQTQQFEFEEKPKKFLDKPNSKLYNPSLLRWFYVQQSDDKKRV
TIFSSCLRSLIRTSSEPIKIQMNAAEYNCASFSFESPVKRFRIDEDMEKR
FLIVSCCEEKDDKWSINCLRYDEEQVAHFKRIKIEHSEYSKVFSDICGNN
WISVYQGDENMEKIFMLFKEVKVGYTLIDIKYHLTCFNGSGKLAFTSQLG
KLYKDFKFVSRLDATTFVTVSFDLTIKIMKASPEGLVAMREFKPKPLPTE
HIHHIQLLKTSEKIYIQMIHRSFQFKIYIYDVYSEPGEPFAVRYTRVSYY
KPKLAINQLSNDVAILQFQDVQPTFEVEFLNFDKFCATRGDDP Run BLAST on NCBI transcript from alignment at sc0000613:127218..128634 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027305 ID=TCONS_00027305|Name=TCONS_00027305|organism=Clytia hemisphaerica|type=transcript|length=1417bp|location=Sequence derived from alignment at sc0000613:127218..128634 (Clytia hemisphaerica)
GTTCTTTTGAGCTGTGTCATTTAAGGATCTTGCAGTTATCAAGAAAGACT
TACTAGTCTAATCATTGTAAGAAACATTGATGTAGTTAAGGATCGTCACC
TCGTGTTGcacaaaatttatcaaaatttaggAATTCCACTTCAAAGGTTG
GTTGTACGTCTTGAAATTGTAGAATGGCTACATCATTTGATAGTTGGTTA
ATAGCGAGTTTAGGCTTGTAGTAGCTTACTCTTGTATAACGAACTGCAAA
CGGTTCCCCCGGTTCTGAATATACAtcataaatatatattttaaactGAA
AAGACCTATGTATCATTTGAATGTAGATCTTTTCAGAGGTTTTCAGTAGC
TGGATATGGTGAATATGCTCTGTAGGTAGTGGTTTGGGCTTGAATTCCCT
CATTGCAACCAGCCCTTCTGgtgaagctttcatgattttaaTTGTTAAAT
CAAAGGAGACCGTGACGAAAGTTGTAGCATCAAGTCGGCTGACAAACTTG
AAATCTTTGTAAAGCTTGCCCAACTGAGACGTAAACGCCAATTTGCCTGA
CCCGTTAAAACATGTGAGATGATATTTTATATCAATCAATGTGTATCCTA
CTTTAACTTCTTTAAACAGCATGAAAATCTTTTCCATGTTTTCGTCCCCT
TGGTACACAGATATCCAGTTATTTCCACAGATATCGCTAAATACTTTAGA
GTATTCACTGTGCTCGATTTTAATCCTCTTGAAATGAGCTACTTGTTCCT
CGTCATATCGCAAACAATTGATGCTCCATTTGTCATCCTTTTCTTCGCAG
CAACTGACAATAAGAAATCTCTTCTCCATGTCTTCATCAATTCGAAACCT
CTTTACAGGGCTTTCAAAACTGAAGCTTGCACAATTATATTCAGCCGCAT
TCATTTGTATTTTTATTGGCTCGCTTGAAGTGCGAATTAGACTTCTCAAG
CAACTGCTGAAAATTGTCACCCGTTTTTTATCGTCAGACTGTTGAACATA
GAACCAACGCAAGAGTGAAGGGTTGTACAGCTTTGAGTTTGGTTTATCAA
GAAACTTCTTAGGTTTTTCTTCGAATTCGAATTGTTGCGTTTGGAGCTTG
TCACCTTGATAAGAAAACACGTATACAATGTTCCTTCCGTCAGGGTGACT
GTAGCTTCGTGTTGGACGAATGAAAGCGGAATAAAAGTTTCCTGTATTGT
CAAAACCGGTTGGTGAGCTGTAGAATAGTGAAAACTCCTTGTCACTATCC
TCGCCCCAGTTCTCCTCACTGATTCTGAATTCGTACTTTGAATACCCATC
TGTGGACAAAGGAAGAAAGGTTTGATTTGACTCTACATCCCCTGCTGTTC
CTGTTGGATTCATCTCTGCTTCATCTGCATTCGTTACAAGTTGTGTGATG
TGTGTTGAACATTTGTC Coding sequence (CDS) from alignment at sc0000613:127218..128634 >TCONS_00027305 ID=TCONS_00027305|Name=TCONS_00027305|organism=Clytia hemisphaerica|type=CDS|length=1332bp|location=Sequence derived from alignment at sc0000613:127218..128634 (Clytia hemisphaerica)
TTAAGGATCGTCACCTCGTGTTGcacaaaatttatcaaaatttaggAATT
CCACTTCAAAGGTTGGTTGTACGTCTTGAAATTGTAGAATGGCTACATCA
TTTGATAGTTGGTTAATAGCGAGTTTAGGCTTGTAGTAGCTTACTCTTGT
ATAACGAACTGCAAACGGTTCCCCCGGTTCTGAATATACAtcataaatat
atattttaaactGAAAAGACCTATGTATCATTTGAATGTAGATCTTTTCA
GAGGTTTTCAGTAGCTGGATATGGTGAATATGCTCTGTAGGTAGTGGTTT
GGGCTTGAATTCCCTCATTGCAACCAGCCCTTCTGgtgaagctttcatga
ttttaaTTGTTAAATCAAAGGAGACCGTGACGAAAGTTGTAGCATCAAGT
CGGCTGACAAACTTGAAATCTTTGTAAAGCTTGCCCAACTGAGACGTAAA
CGCCAATTTGCCTGACCCGTTAAAACATGTGAGATGATATTTTATATCAA
TCAATGTGTATCCTACTTTAACTTCTTTAAACAGCATGAAAATCTTTTCC
ATGTTTTCGTCCCCTTGGTACACAGATATCCAGTTATTTCCACAGATATC
GCTAAATACTTTAGAGTATTCACTGTGCTCGATTTTAATCCTCTTGAAAT
GAGCTACTTGTTCCTCGTCATATCGCAAACAATTGATGCTCCATTTGTCA
TCCTTTTCTTCGCAGCAACTGACAATAAGAAATCTCTTCTCCATGTCTTC
ATCAATTCGAAACCTCTTTACAGGGCTTTCAAAACTGAAGCTTGCACAAT
TATATTCAGCCGCATTCATTTGTATTTTTATTGGCTCGCTTGAAGTGCGA
ATTAGACTTCTCAAGCAACTGCTGAAAATTGTCACCCGTTTTTTATCGTC
AGACTGTTGAACATAGAACCAACGCAAGAGTGAAGGGTTGTACAGCTTTG
AGTTTGGTTTATCAAGAAACTTCTTAGGTTTTTCTTCGAATTCGAATTGT
TGCGTTTGGAGCTTGTCACCTTGATAAGAAAACACGTATACAATGTTCCT
TCCGTCAGGGTGACTGTAGCTTCGTGTTGGACGAATGAAAGCGGAATAAA
AGTTTCCTGTATTGTCAAAACCGGTTGGTGAGCTGTAGAATAGTGAAAAC
TCCTTGTCACTATCCTCGCCCCAGTTCTCCTCACTGATTCTGAATTCGTA
CTTTGAATACCCATCTGTGGACAAAGGAAGAAAGGTTTGATTTGACTCTA
CATCCCCTGCTGTTCCTGTTGGATTCATCTCTGCTTCATCTGCATTCGTT
ACAAGTTGTGTGATGTGTGTTGAACATTTGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027305-exon-sc0000613-1491911889:127218..128634 | TCONS_00027305-exon-sc0000613-1491911889:127218..128634 | Clytia hemisphaerica | exon |
| TCONS_00027305-exon-sc0000613-1510915933:127218..128634 | TCONS_00027305-exon-sc0000613-1510915933:127218..128634 | Clytia hemisphaerica | exon |
| TCONS_00027305-exon-sc0000613-1575043694:127218..128634 | TCONS_00027305-exon-sc0000613-1575043694:127218..128634 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000613 | supercontig | sc0000613:127218..128634 . |
Blast
The following BLAST results are available for this feature:
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