TCONS_00027300 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027300
Unique NameTCONS_00027300
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2054

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027300 ID=TCONS_00027300|Name=TCONS_00027300|organism=Clytia hemisphaerica|type=transcript|length=2054bp
TAGATAAAGCTTTTCAAGATGAAGCACTTTCCGTCTAGTACATTACTACT
GCTGTTAGTGTTAACACAAATCGATATAATCTCAAGTTCACCCTTGTGTT
ACAATGGAACAGAGTCCTCTTGTTGTCAAACAGTTGATGAATTTTGTCGC
CACTATGATATCGATCCTGGTAAAGACATTTACACATTCAACAAGGCTGA
TATAGAATACTACAGGATTGCAAAGCCTCTGAAATATGGGATGGTGATAC
GATTAAGGTGGATTGACGTCGAAATGTCTGGGGAGATGAGAAGCTGCGAA
GAGGGCACCATTACTGTTTTTGTTGGATGTTCAGAGCCAAGAGAATACGG
TCCGTTTTGCGGACGAGTTCGACCGAACAATTTCTTCACTTTAGAGGGTT
GTATAGTGATCAAAGTCGACCAGGTCGGTAAAAAAGATGAGAGaagaaaa
taccctaaaattcGATTCATGTTCGATCATTTAAACGAATTGGATATTGT
GAAAGGATCCAGAATACTTCCGTGTCGCGAAGAAGGGTAACAACAAGATT
AATATTCAATTGATTTTGTCATGTAACATCTTAAATGCCTTGTAAAATTC
ACTTCCCAGAAGCTCTTTTTACATCGAAACGACATCAGCAAATATGCGGA
TATCTCCTACGAAAATGACAGTAAAGGAAGCGACGCCGGGTATCGGTTAG
ATCAAAGTATCTTGTTTATACTCCGAAACTTGAGTAAAGAAAATCTTGTG
AAACTATCGAAAAAGTCCGTTTTCAACGACACTAATACACAAGTATGTAT
TCTTGAGAATCAAGCTCATCACTGgaatatcataaaaaaatatttcagcg
ATTTGCAAAGTGAGCTTGGTCTTATAAGAAAGAAACAGTAGATTATTTCC
AGATTTCCAGATTCTAGGCGCTCCGTTTGggaaaagaaagaaatcaaaat
ctatTCATTTGACTTAACTGACTCCAGATTTTTTTTAGAGTAATAGTATC
AGGGATGAAGTCTCTTAGTGGTGTCATCACATCACCCGAATGGCCTATTG
GTTTCCACCGACATTACCCAACGTCATGTCTTTGGAGAATCAAAGCACAA
AAAGGATTTGTNCATTGGTTTCCGCCGACATTACCCAACGTCATGTCTTT
GGAGAATCAAAGCACAAAAAGGATTTGTCATTCAATTAAATTTGGTGTTT
ACTGGCAAAGTATTTGAATCCATTCTTCAATCGTGTGGAAAGTCATCACA
TCTTCGTATCACAGGcaagaaatcaaatgggatggAACCACTGTGCAACC
ACATGCGTGGAAGCAGCCTTACACTAAACACGCAATCCAACGAAGTGGAG
ATCCGAATGTCTTACACATCTGGAAAGTTCACACGAGGTTTTGTTTTGGG
CTGGACAACCTTTAAAAAGCCAGTTGAAGcctcagaaaaaattaatatcG
GGAAAATCTTGATCCCACTTCTTGGTATATTGCTCTTCTTCTCCATCACG
TGCAATATTGGAAGAATGTGTCGCCGAAGACAACAACAAGTTTGCGAAAG
GAATCTGATATCACATGACGCACACACTGACCAAATTGGCAGGAAGAACA
GTATTTTCATTGAAAACGACTTGGCAAGATCAAAATGAATCGCTGAATGA
CCTTCCGCCACCTTACGAAGAAGCCGTTGCTGAGGCAGACAAGGTCTGAA
CGATAAATGCTAAAAACCAATAAAGACTTGGAGGAAATAACTCAGTAAAT
ATTCTGATCTCAAAAATGAAAGCATGAtaatgatttatttttaaaactat
ttCTTAAATGTGGTTAAAGCCTTCAGTTGGAtcttagtttaatttttcta
atgaTGGAGTTGATTGTAAAgtcaatttagaatttttttacggTTTTACA
GTATATTTACAGTTTTTCTTTACGATTTAAGAATAAACTTAAAACATTTC
TTTacgattcaaaataaataaacaacacaaaaatttgattttattcaaac
aaaGCTTTTCGAGTCTTAACTGCTCATCATCAGgttaaaaatgacatttc
tAGG
Run BLAST on NCBI

transcript from alignment at sc0000613:174383..177657-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027300 ID=TCONS_00027300|Name=TCONS_00027300|organism=Clytia hemisphaerica|type=transcript|length=3275bp|location=Sequence derived from alignment at sc0000613:174383..177657- (Clytia hemisphaerica)
TAGATAAAGCTTTTCAAGATGAAGCACTTTCCGTCTAGTACATTACTACT
GCTGTTAGTGTTAACACAAATCGATATAATCTCAAGTTCACCCTTGTGTT
ACAATGGAACAGAGTCCTCTTGTTGTCAAACAGTTGATGAATTTTGTCGC
CACTATGATATCGATCCTGGTAAAGACATTTACACATTCAACAAGGCTGA
TATAGAATACTACAGGATTGCAAAGCCTCTGAAATATGGGATGGTGATAC
GATTAAGGTGGATTGACGTCGAAATGTCTGGGGAGATGAGAAGCTGCGAA
GAGGGCACCATTACTGTTTTTGTTGGGTGAGCCTCCTTACCTATTTGACT
TCCTAGAAGGAACTAGTCCCTTTTATAATGGTTAAAGCTTCTTATCCCTA
TTTATAAGCAACAAGGAAAGGGAAGATTTGAAGAGATTTTATTTGCTTCA
AAGAAGTGATTTATAAAAATTAGGTAACTATTTGTGTCAAACACTTACCT
GAGAAAATGGCCTATTTCTCGGTTAGGGAAATTTTTTGCGAAAAGGGGAG
GGTAAAAAAGAAAGAATCATTTATAAAGTGGGGGATAGAGGCCCCTTTAG
GCACTATACTAACCATGCCAATGGCACAAGGACTAAGTCATTTTCTGAAC
ATGTGCTTATGACTCGAGGATCTATTTTCTTAATGTTAATTTACATCAAT
AATATTCTACCAATATGATAATGTGGTACGAATAATTATAGCTAAAATTA
TCAAATTATCTTTTTTAGATGTTCAGAGCCAAGAGAATACGGTCCGTTTT
GCGGACGAGTTCGACCGAACAATTTCTTCACTTTAGAGGGTTGTATAGTG
ATCAAAGTCGACCAGGTCGGTAAAAAAGATGAGAGAAGAAAATACCCTAA
AATTCGATTCATGTTCGATCATTTAAACGAATTGGATATTGTGAAAGGAT
CCAGAATACTTCCGTGTCGCGAAGAAGGGTAACAACAAGATTAATATTCA
ATTGATTTTGTCATGTAACATCTTAAATGCCTTGTAAAATTCACTTCCCA
GAAGCTCTTTTTACATCGAAACGACATCAGCAAATATGCGGATATCTCCT
ACGAAAATGACAGTAAAGGAAGCGACGCCGGGTATCGGTTAGATCAAAGT
ATCTTGTTTATACTCCGAAACTTGAGTAAAGAAAATCTTGTGAAACTATC
GAAAAAGTCCGTTTTCAACGACACTAATACACAAGTATGTATTCTTGAGA
ATCAAGCTCATCACTGGAATATCATAAAAAAATATTTCAGCGATTTGCAA
AGTGAGCTTGGTCTTATAAGAAAGAAACAGTAGATTATTTCCAGATTTCC
AGATTCTAGGCGCTCCGTTTGGGAAAAGAAAGAAATCAAAATCTATTCAT
TTGACTTAACTGACTCCAGATTTTTTTTAGAGTAATAGTATCAGGGATGA
AGTCTCTTAGTGGTGTCATCACATCACCCGAATGGCCTATTGGTTTCCAC
CGACATTACCCAACGTCATGTCTTTGGAGAATCAAAGCACAAAAAGGATT
TGTNCATTGGTTTCCGCCGACATTACCCAACGTCATGTCTTTGGAGAATC
AAAGCACAAAAAGGATTTGTCATTCAATTAAATTTGGTGTTTACTGGCAA
AGTATTTGAATCCATTCTTCAATCGTGTGGAAAGTCATCACATCTTCGTA
TCACAGGTTTGTATTTCAAATTCAATCTTACTATAATTCTAATACACTTT
TTTAGAATTTTAGAATGTAAATGAGGTTGTGGTATATAAAAAATGAAAGT
ACAGGAAAATCTCAAAGGTCTTGAAAAGCAGGTAGTAAGTATAGTATAAT
AAAAGAAGCACGAATCCTTTAGAGGATGTCAGAAGCCAAGGTTAAGTTCA
TTCCGCCTGTTATGCTACTCCTTGAAAATTACAAAAAATGTTCCCTATAA
AAATCTGCAAATCTGCTTTCATAAACAGAGCATTCGGTATTTTGTAGGCA
AGAAATCAAATGGGATGGAACCACTGTGCAACCACATGCGTGGAAGCAGC
CTTACACTAAACACGCAATCCAACGAAGTGGAGATCCGAATGTCTTACAC
ATCTGGAAAGTTCACACGAGGTTTTGTTTTGGGCTGGACAACCTTTAAAA
AGCCAGTTGAAGGTAACCAGTGTTAGAAAACTCATCTATTGAGAGATGGT
TTCGTCATCCCTGAGTTGTAAAAGTTAAAAATGATCAATTGTGTCACAAT
AACGACATTCGCGATGACGGAATTTTCCAATAAATTGACAATTGAGTATT
TGTCCCCACTGAGGGAATCCAGGGCACTTAGTTGCACCTCAAATAGTCTC
TAGCCCCTAACTAAAGAATACATAAATACATCTGTTATTCTCATTTTTTG
TAGCCTCAGAAAAAATTAATATCGGGAAAATCTTGATCCCACTTCTTGGT
ATATTGCTCTTCTTCTCCATCACGTGCAATATTGGAAGAATGTGTCGCCG
AAGACAACAACAAGTTTGCGAAAGGAATCTGATATCACATGACGCACACA
CTGACCAAATTGGCAGGAAGAACAGTATTTTCATTGAAAACGGTAAAACA
GAAGGTATCAGTGTATGAGAGTTCTGTAATCTTTGTGCCTATTCTCTAGT
GGTTAAAACGTACCATTGATGTATTTCTAGAACTGAGATTTAAGAACTGG
TAGCGGCTTGGATAGATAAGTTTATTTGCTTTGTCTGTTACCCTTCTAAA
CGTTATAACATACGTCAAAAATCCCTTTTTATTGTTTACAAGTAAATAAT
CATTCTTATAGAATCTCAAAATATATTGTTCCTTTTCAGACTTGGCAAGA
TCAAAATGAATCGCTGAATGACCTTCCGCCACCTTACGAAGAAGCCGTTG
CTGAGGCAGACAAGGTCTGAACGATAAATGCTAAAAACCAATAAAGACTT
GGAGGAAATAACTCAGTAAATATTCTGATCTCAAAAATGAAAGCATGATA
ATGATTTATTTTTAAAACTATTTCTTAAATGTGGTTAAAGCCTTCAGTTG
GATCTTAGTTTAATTTTTCTAATGATGGAGTTGATTGTAAAGTCAATTTA
GAATTTTTTTACGGTTTTACAGTATATTTACAGTTTTTCTTTACGATTTA
AGAATAAACTTAAAACATTTCTTTACGATTCAAAATAAATAAACAACACA
AAAATTTGATTTTATTCAAACAAAGCTTTTCGAGTCTTAACTGCTCATCA
TCAGGTTAAAAATGACATTTCTAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015365XLOC_015365Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027300-exon-sc0000613-1575043694:177332..177657TCONS_00027300-exon-sc0000613-1575043694:177332..177657Clytia hemisphaericaexon
TCONS_00027300-exon-sc0000613-1575043694:175952..176889TCONS_00027300-exon-sc0000613-1575043694:175952..176889Clytia hemisphaericaexon
TCONS_00027300-exon-sc0000613-1575043694:175496..175660TCONS_00027300-exon-sc0000613-1575043694:175496..175660Clytia hemisphaericaexon
TCONS_00027300-exon-sc0000613-1575043694:175066..175254TCONS_00027300-exon-sc0000613-1575043694:175066..175254Clytia hemisphaericaexon
TCONS_00027300-exon-sc0000613-1575043694:174383..174818TCONS_00027300-exon-sc0000613-1575043694:174383..174818Clytia hemisphaericaexon
TCONS_00027300-exon-sc0000613-1510915933:177332..177657TCONS_00027300-exon-sc0000613-1510915933:177332..177657Clytia hemisphaericaexon
TCONS_00027300-exon-sc0000613-1510915933:175952..176889TCONS_00027300-exon-sc0000613-1510915933:175952..176889Clytia hemisphaericaexon
TCONS_00027300-exon-sc0000613-1510915933:175496..175660TCONS_00027300-exon-sc0000613-1510915933:175496..175660Clytia hemisphaericaexon
TCONS_00027300-exon-sc0000613-1510915933:175066..175254TCONS_00027300-exon-sc0000613-1510915933:175066..175254Clytia hemisphaericaexon
TCONS_00027300-exon-sc0000613-1510915933:174383..174818TCONS_00027300-exon-sc0000613-1510915933:174383..174818Clytia hemisphaericaexon
TCONS_00027300-exon-sc0000613-1491911889:177332..177657TCONS_00027300-exon-sc0000613-1491911889:177332..177657Clytia hemisphaericaexon
TCONS_00027300-exon-sc0000613-1491911889:175952..176889TCONS_00027300-exon-sc0000613-1491911889:175952..176889Clytia hemisphaericaexon
TCONS_00027300-exon-sc0000613-1491911889:175496..175660TCONS_00027300-exon-sc0000613-1491911889:175496..175660Clytia hemisphaericaexon
TCONS_00027300-exon-sc0000613-1491911889:175066..175254TCONS_00027300-exon-sc0000613-1491911889:175066..175254Clytia hemisphaericaexon
TCONS_00027300-exon-sc0000613-1491911889:174383..174818TCONS_00027300-exon-sc0000613-1491911889:174383..174818Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000613supercontigsc0000613:174383..177657 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.17946	0.254077	0.307453	0.1089	0	0	0.200166	0.172269	0.547554	0.328596	0.0473914	5.90063	4.48124	2.17334	3.93044	1.14028	0.160088	0	0.0504993	0	0.136027	0	0	0	0.162593	0	0.056279	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027300 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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