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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027293 ID=TCONS_00027293|Name=TCONS_00027293|organism=Clytia hemisphaerica|type=transcript|length=557bp
AAAAAAACTCACTCCATTTTGTTAATAGTGAAACTTTGTTCtcatttcat
aaaaaagaaaagaataatgCTTTCACGATTTCGTAATGTCACTATTAGAC
ATGGGAAGGAAAGCAAAATAATTTTCACAGCAATCAGAAGTTCTTCACAG
GATGCACCAAAGAATTTGTTTGAAGTTTATGAAAAGAACTCTCATTGGAT
GGGACAATATGAACGAAATCCTGTCATCAAGACCAAAATTTCACAGAATG
AACTTTCAAACTTGATTGGTAAGGAAAGTAACCGACTTGCTCCTTTGGAT
TTGGAGCATTACATCAGTGAACACAAAAGGGAGTGGCAAGCTGGTGATCT
GAGAACTGGTGCTATTGGAAGGAAGTTGGGAATGTCAGTATTGTGGACTA
AAGAAGGTTTCAGACATGCTGTCACGTTAGTTCAAATAAGCGATTGTCGA
GTGATTGACACACAGATATCTCGTGAAGACGGAGGAAAAGATACAGTCAC
TCAAATGATCTTGGCTTCTGGAGACTACACAAATGTAGATTACATCGCCA
ATGTAAA Run BLAST on NCBI protein sequence of TCONS_00027293-protein >TCONS_00027293-protein ID=TCONS_00027293-protein|Name=TCONS_00027293-protein|organism=Clytia hemisphaerica|type=polypeptide|length=185bp
KKTHSILLIVKLCSHFIKKKRIMLSRFRNVTIRHGKESKIIFTAIRSSSQ
DAPKNLFEVYEKNSHWMGQYERNPVIKTKISQNELSNLIGKESNRLAPLD
LEHYISEHKREWQAGDLRTGAIGRKLGMSVLWTKEGFRHAVTLVQISDCR
VIDTQISREDGGKDTVTQMILASGDYTNVDYIANV Run BLAST on NCBI transcript from alignment at sc0000613:198211..199390+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027293 ID=TCONS_00027293|Name=TCONS_00027293|organism=Clytia hemisphaerica|type=transcript|length=1180bp|location=Sequence derived from alignment at sc0000613:198211..199390+ (Clytia hemisphaerica)
AAAAAAACTCACTCCATTTTGTTAATAGTGAAACTTTGTTCtcatttcat
aaaaaagaaaagaataatgCTTTCACGATTTCGTAATGTCACTATTAGAC
ATGGGAAGGAAAGCAAAATAATTTTCACAGCAATCAGAAGTTCTTCACAG
GATGCACCAAAGAATTTGTTTGAAGTTTATGAAAAGAACTCTCATTGGAT
GGGACAATATGAACGAAATCCTGTCATCAAGACCAAAATTTCACAGAATG
AACTTTCAAACTTGATTGGTAAGGAAAGTAACCGACTTGCTCCTTTGGAT
TTGGAGCATTACATCAGTGAACACAAAAGGGAGTGGCAAGCTGGTGATCT
GAGAACTGGTGCTATTGGAAGGAAGTTGGGAATGTCAGTATTGTGGACTA
AAGAAGGTTTCAGACATGCTGTCACGTTAGTTCAAGTATGACTTTGTGTT
AGTCTTGTACCTTTATTACAAGAATAACTAGTCAAGTTAAAACCTCAAAG
TTAACTCGCACCTCTTTAGCTCAATGATATAATACGTGGTTTTAATCGAG
GGTAAATATaaagaccaactaactgtcagctctactgtgatttgacgtca
aatcttgtcttgatcgtactgacgtcggtatgttttttaACTTTAAGAGG
CTGTATTTCTTTTTGAGTTTGAGTCAGAGAGTTGCTGTAATACATTtctt
tgctcagaatttcatgctcttttagatggtaccaatcattttcgtttatt
ttgacttttgaaaatcagctattttcctactattttcctcattttccctt
gcagttttgcctatggcatCACTATTATGGTCATactcataaaaagtttt
cccgggcctaatccgcgtcctccctctcaaaaatatcttataatatactg
ttctttggaatggactaaaaatggctaggtcgtaaaaaagatgtcacagg
ACCCTAGGCTTGGCCCCTACTATAATGTTTGCTAAAAAATACTAACACTT
GGTGAATGGTATAAATTTTTACACTGATTTATTAACATAATGTTTTTCCT
TTTCTCAGATAAGCGATTGTCGAGTGATTGACACACAGATATCTCGTGAA
GACGGAGGAAAAGATACAGTCACTCAAATGATCTTGGCTTCTGGAGACTA
CACAAATGTAGATTACATCGCCAATGTAAA Coding sequence (CDS) from alignment at sc0000613:198211..199390+ >TCONS_00027293 ID=TCONS_00027293|Name=TCONS_00027293|organism=Clytia hemisphaerica|type=CDS|length=1110bp|location=Sequence derived from alignment at sc0000613:198211..199390+ (Clytia hemisphaerica)
AAAAAAACTCACTCCATTTTGTTAATAGTGAAACTTTGTTCtcatttcat
aaaaaagaaaagaataatgCTTTCACGATTTCGTAATGTCACTATTAGAC
ATGGGAAGGAAAGCAAAATAATTTTCACAGCAATCAGAAGTTCTTCACAG
GATGCACCAAAGAATTTGTTTGAAGTTTATGAAAAGAACTCTCATTGGAT
GGGACAATATGAACGAAATCCTGTCATCAAGACCAAAATTTCACAGAATG
AACTTTCAAACTTGATTGGTAAGGAAAGTAACCGACTTGCTCCTTTGGAT
TTGGAGCATTACATCAGTGAACACAAAAGGGAGTGGCAAGCTGGTGATCT
GAGAACTGGTGCTATTGGAAGGAAGTTGGGAATGTCAGTATTGTGGACTA
AAGAAGGTTTCAGACATGCTGTCACGTTAGTTCAAATAAGCGATTGTCGA
GTGATTGACACACAGATATCTCGTGAAGACGGAGGAAAAGATACAGTCAC
TCAAATGATCTTGGCTTCTGGAGACTACACAAATGTAGATTACATCGCCA
ATGTAAAAAAAACTCACTCCATTTTGTTAATAGTGAAACTTTGTTCtcat
ttcataaaaaagaaaagaataatgCTTTCACGATTTCGTAATGTCACTAT
TAGACATGGGAAGGAAAGCAAAATAATTTTCACAGCAATCAGAAGTTCTT
CACAGGATGCACCAAAGAATTTGTTTGAAGTTTATGAAAAGAACTCTCAT
TGGATGGGACAATATGAACGAAATCCTGTCATCAAGACCAAAATTTCACA
GAATGAACTTTCAAACTTGATTGGTAAGGAAAGTAACCGACTTGCTCCTT
TGGATTTGGAGCATTACATCAGTGAACACAAAAGGGAGTGGCAAGCTGGT
GATCTGAGAACTGGTGCTATTGGAAGGAAGTTGGGAATGTCAGTATTGTG
GACTAAAGAAGGTTTCAGACATGCTGTCACGTTAGTTCAAATAAGCGATT
GTCGAGTGATTGACACACAGATATCTCGTGAAGACGGAGGAAAAGATACA
GTCACTCAAATGATCTTGGCTTCTGGAGACTACACAAATGTAGATTACAT
CGCCAATGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027293-exon-sc0000613-1491911889:198211..198645 | TCONS_00027293-exon-sc0000613-1491911889:198211..198645 | Clytia hemisphaerica | exon |
| TCONS_00027293-exon-sc0000613-1510915933:198211..198645 | TCONS_00027293-exon-sc0000613-1510915933:198211..198645 | Clytia hemisphaerica | exon |
| TCONS_00027293-exon-sc0000613-1575043694:198211..198645 | TCONS_00027293-exon-sc0000613-1575043694:198211..198645 | Clytia hemisphaerica | exon |
| TCONS_00027293-exon-sc0000613-1491911889:199269..199390 | TCONS_00027293-exon-sc0000613-1491911889:199269..199390 | Clytia hemisphaerica | exon |
| TCONS_00027293-exon-sc0000613-1510915933:199269..199390 | TCONS_00027293-exon-sc0000613-1510915933:199269..199390 | Clytia hemisphaerica | exon |
| TCONS_00027293-exon-sc0000613-1575043694:199269..199390 | TCONS_00027293-exon-sc0000613-1575043694:199269..199390 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000613 | supercontig | sc0000613:198211..199390 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR009000 | Transl_B-barrel |
Blast
The following BLAST results are available for this feature:
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